Guide to the Human Genome
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Name: CD300A Sequence: fasta or formatted (299aa) NCBI GI: 56550061
Description:

leukocyte membrane antigen

Referenced in:

Additional Immunoglobulin-related Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         26           2
 C cysteine            2.0          6           1
 D aspartate           3.3         10           1
 E glutamate           8.0         24           3
 F phenylalanine       3.0          9           1
 G glycine             4.0         12           2
 H histidine           2.0          6           1
 I isoleucine          3.0          9           1
 K lysine              4.0         12           1
 L leucine            11.7         35           6
 M methionine          1.3          4           1
 N asparagine          3.0          9           1
 P proline             7.4         22           2
 Q glutamine           3.3         10           1
 R arginine            4.7         14           1
 S serine              9.4         28           2
 T threonine           7.7         23           2
 V valine              8.0         24           2
 W tryptophan          3.0          9           1
 Y tyrosine            2.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leukocyte membrane antigen 
CD300C                0.374   CD300C antigen 
CD300E                0.185   CD300e molecule 
CD300LF               0.161   NK inhibitory receptor precursor 
LOC100130520          0.153   PREDICTED: similar to CD300C antigen 
LOC100130520          0.153   PREDICTED: similar to CD300C antigen 
LOC100130520          0.153   PREDICTED: similar to CD300C antigen 
CD300LB               0.141   CD300 molecule-like family member b 
CD300LD               0.122   CD300 molecule-like family member d 
CD300LG               0.094   CD300 molecule-like family member g 
NCR2                  0.084   natural cytotoxicity triggering receptor 2 
PIGR                  0.079   polymeric immunoglobulin receptor precursor 
FCAMR                 0.067   Fc receptor, IgA, IgM, high affinity isoform 2 [Hom...
FCAMR                 0.058   Fc receptor, IgA, IgM, high affinity isoform 1 [Hom...
FCAMR                 0.058   Fc receptor, IgA, IgM, high affinity isoform 1 [Hom...
FAIM3                 0.046   Fas apoptotic inhibitory molecule 3 isoform a [Homo...
FAIM3                 0.046   Fas apoptotic inhibitory molecule 3 isoform a 
TREM2                 0.043   triggering receptor expressed on myeloid cells 2 prec...
ADORA3                0.043   adenosine A3 receptor isoform 3 
ADORA3                0.043   adenosine A3 receptor isoform 1 
TREML2                0.038   triggering receptor expressed on myeloid cells-like...
TREML4                0.036   triggering receptor expressed on myeloid cells-like ...
HAVCR1                0.034   hepatitis A virus cellular receptor 1 
HAVCR1                0.034   hepatitis A virus cellular receptor 1 
TREML1                0.031   triggering receptor expressed on myeloid cells-like ...
CEACAM1               0.029   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.024   carcinoembryonic antigen-related cell adhesion molec...
TIMD4                 0.024   T-cell immunoglobulin and mucin domain containing 4...
TIMD4                 0.024   T-cell immunoglobulin and mucin domain containing 4...
MUSK                  0.024   skeletal muscle receptor tyrosine kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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