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Search of human proteins with 239745797
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745797 PREDICTED: hypothetical protein XP_002343592 [Homo
sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745797 PREDICTED: hypothetical protein XP_002343592 [Homo ... 338 1e-93
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 38 0.003
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 35 0.021
gi|191252814 RIMS binding protein 3B [Homo sapiens] 34 0.060
gi|191252806 RIMS binding protein 3C [Homo sapiens] 34 0.060
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 34 0.060
gi|39812378 RAN binding protein 9 [Homo sapiens] 33 0.10
gi|223468634 envoplakin-like [Homo sapiens] 33 0.10
gi|239756902 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo ... 33 0.13
gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo ... 33 0.13
gi|150170670 piccolo isoform 2 [Homo sapiens] 32 0.23
gi|150378539 piccolo isoform 1 [Homo sapiens] 32 0.23
gi|239747178 PREDICTED: hypothetical protein XP_002343932 [Homo ... 32 0.30
gi|68563515 keratinocyte proline-rich protein [Homo sapiens] 32 0.30
gi|4507233 suppressor of cytokine signaling 1 [Homo sapiens] 31 0.39
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 31 0.39
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 31 0.39
gi|38569411 AP1 gamma subunit binding protein 1 isoform 2 [Homo ... 31 0.39
gi|38569409 AP1 gamma subunit binding protein 1 isoform 1 [Homo ... 31 0.39
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 31 0.39
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 31 0.51
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 31 0.51
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 31 0.51
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 30 0.67
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 30 0.67
gi|148236531 hypothetical protein LOC339779 [Homo sapiens] 30 0.67
gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Ho... 30 0.87
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens] 30 1.1
gi|17511255 poly(A) binding protein interacting protein 1 isofor... 30 1.1
>gi|239745797 PREDICTED: hypothetical protein XP_002343592 [Homo
sapiens]
Length = 159
Score = 338 bits (866), Expect = 1e-93
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MMHCQRQYFCQNDTFKEQPETFDSGVDFLSAHIKGAVNIQQASLQGTLTTNISSLTHWIL 60
MMHCQRQYFCQNDTFKEQPETFDSGVDFLSAHIKGAVNIQQASLQGTLTTNISSLTHWIL
Sbjct: 1 MMHCQRQYFCQNDTFKEQPETFDSGVDFLSAHIKGAVNIQQASLQGTLTTNISSLTHWIL 60
Query: 61 KTPRILILSQPGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELT 120
KTPRILILSQPGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELT
Sbjct: 61 KTPRILILSQPGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELT 120
Query: 121 PSQQLVCPCSAAGATWSPPQRCLGSFGSHQRERPSPLSA 159
PSQQLVCPCSAAGATWSPPQRCLGSFGSHQRERPSPLSA
Sbjct: 121 PSQQLVCPCSAAGATWSPPQRCLGSFGSHQRERPSPLSA 159
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 38.1 bits (87), Expect = 0.003
Identities = 32/99 (32%), Positives = 37/99 (37%), Gaps = 22/99 (22%)
Query: 77 RRRGPRRPDLTQNRPGFSGCEEPEPP--------QRPRKWREVSKPRPGELTPSQQLVCP 128
R PRRP RP C P PP +RPR+W PR G + C
Sbjct: 112 RHPRPRRPGGPALRPTPRPCAGPAPPPASRDCRCRRPRRW-----PRAGR-RGRRAGACK 165
Query: 129 CSAAGATWSP--------PQRCLGSFGSHQRERPSPLSA 159
S AGA WS C GS G+ P+P A
Sbjct: 166 PSCAGAAWSARGAPLCSYRTSCAGSCGARTAPTPAPTCA 204
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 35.4 bits (80), Expect = 0.021
Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 74 DSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKP---RPGELTPSQQLVCPCS 130
DS G RP + G S EP P+ W E S+P PG P L P
Sbjct: 360 DSQSASGEERPPEADGKKGNSPNSEPPTPKTA--WAETSRPPETEPGPPAPKPPLPPPHR 417
Query: 131 AAGATWSPP 139
W PP
Sbjct: 418 GPAGNWGPP 426
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 33.9 bits (76), Expect = 0.060
Identities = 37/104 (35%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 42 ASLQGTLTTNISSLTHWILKTPRIL--ILSQPGADSSRRRGPRRPDLTQNRPGFSGCEEP 99
+S G L+T+ SSL + R L S P A S R P PD + PG P
Sbjct: 272 SSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEER-PSSPDTST--PGSRRLSPP 328
Query: 100 E----PPQRPRKWREVSKPRPGELTPSQQLVCPCSAAGATWSPP 139
PP P R++S PR GE + SQ PC T SPP
Sbjct: 329 PSPLPPPPPPSAHRKLSNPRGGEGSESQ----PCEV--LTPSPP 366
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 33.9 bits (76), Expect = 0.060
Identities = 37/104 (35%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 42 ASLQGTLTTNISSLTHWILKTPRIL--ILSQPGADSSRRRGPRRPDLTQNRPGFSGCEEP 99
+S G L+T+ SSL + R L S P A S R P PD + PG P
Sbjct: 272 SSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEER-PSSPDTST--PGSRRLSPP 328
Query: 100 E----PPQRPRKWREVSKPRPGELTPSQQLVCPCSAAGATWSPP 139
PP P R++S PR GE + SQ PC T SPP
Sbjct: 329 PSPLPPPPPPSAHRKLSNPRGGEGSESQ----PCEV--LTPSPP 366
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 33.9 bits (76), Expect = 0.060
Identities = 37/104 (35%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 42 ASLQGTLTTNISSLTHWILKTPRIL--ILSQPGADSSRRRGPRRPDLTQNRPGFSGCEEP 99
+S G L+T+ SSL + R L S P A S R P PD + PG P
Sbjct: 272 SSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEER-PSSPDTST--PGSRRLSPP 328
Query: 100 E----PPQRPRKWREVSKPRPGELTPSQQLVCPCSAAGATWSPP 139
PP P R++S PR GE + SQ PC T SPP
Sbjct: 329 PSPLPPPPPPSAHRKLSNPRGGEGSESQ----PCEV--LTPSPP 366
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 33.1 bits (74), Expect = 0.10
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 94 SGCEEPEPPQRPRKWREVSKPRPGELTPSQQLVCPCSAAGATWSPP 139
SG P PPQ+ ++ +++S P P L P +V P A + S P
Sbjct: 2 SGQPPPPPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSP 47
>gi|223468634 envoplakin-like [Homo sapiens]
Length = 301
Score = 33.1 bits (74), Expect = 0.10
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 44 LQGTLTTNISSLTHWILKTPRILILSQPGADSS------RRRGPRRPDLTQNRPGFSGC- 96
+QG L T + T L+ P + GA + R G +RP PG +GC
Sbjct: 103 IQGRLGTRAGAETEAGLRRP--VWAGHGGAGGTDRGAQHRAEGDQRPRRAAAEPGGAGCR 160
Query: 97 EEPEPPQRPRKWREVSKPRPGELTPSQQLVCPCSAAGATW 136
PEP RP + V++ PG+ + Q G TW
Sbjct: 161 HHPEPIPRPTEGGVVARAEPGQPVHALQ--------GCTW 192
>gi|239756902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 32.7 bits (73), Expect = 0.13
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 15 FKEQPETFDSGVDFLSAHIKGAVNIQQASLQGTLTTNISSLTHWILKTPRILILSQPGAD 74
F P+ F SG+ L++H + + A+ + T S I + PR L SQPG +
Sbjct: 6 FFSDPDVFASGL-CLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLF-SQPGGN 63
Query: 75 SSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRK 107
R PR + RP + P P PR+
Sbjct: 64 GGGARAPRTFSRARARP--APAPPPSPAPAPRR 94
>gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo
sapiens]
Length = 121
Score = 32.7 bits (73), Expect = 0.13
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 15 FKEQPETFDSGVDFLSAHIKGAVNIQQASLQGTLTTNISSLTHWILKTPRILILSQPGAD 74
F P+ F SG+ L++H + + A+ + T S I + PR L SQPG +
Sbjct: 6 FFSDPDVFASGL-CLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLF-SQPGGN 63
Query: 75 SSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRK 107
R PR + RP + P P PR+
Sbjct: 64 GGGARAPRTFSRARARP--APAPPPSPAPAPRR 94
>gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo
sapiens]
Length = 121
Score = 32.7 bits (73), Expect = 0.13
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 15 FKEQPETFDSGVDFLSAHIKGAVNIQQASLQGTLTTNISSLTHWILKTPRILILSQPGAD 74
F P+ F SG+ L++H + + A+ + T S I + PR L SQPG +
Sbjct: 6 FFSDPDVFASGL-CLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLF-SQPGGN 63
Query: 75 SSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRK 107
R PR + RP + P P PR+
Sbjct: 64 GGGARAPRTFSRARARP--APAPPPSPAPAPRR 94
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.0 bits (71), Expect = 0.23
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 71 PGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKP---RPGELTPSQQLVC 127
PG S+++ GP +P P ++P P + P + +KP +PG P Q
Sbjct: 456 PGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPG 515
Query: 128 PCSAA----GATWSPPQRCLGSFGSHQRERPSPLSA 159
P + G+T P Q+ + S Q+ P+ SA
Sbjct: 516 PAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSA 551
Score = 28.1 bits (61), Expect = 3.3
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 71 PGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKP---RPGELTPSQQLVC 127
PG +++ GP + Q P + P P + P + +KP +PG P
Sbjct: 446 PGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKP------ 499
Query: 128 PCSAAGATWSPPQR 141
P G+T PPQ+
Sbjct: 500 PSQQPGSTKPPPQQ 513
Score = 27.3 bits (59), Expect = 5.6
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 69 SQPGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTPSQQ 124
S PGA + P +P +Q P +G P P + +E P +L P +
Sbjct: 958 SGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKLEPKAE 1013
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.0 bits (71), Expect = 0.23
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 71 PGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKP---RPGELTPSQQLVC 127
PG S+++ GP +P P ++P P + P + +KP +PG P Q
Sbjct: 456 PGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPG 515
Query: 128 PCSAA----GATWSPPQRCLGSFGSHQRERPSPLSA 159
P + G+T P Q+ + S Q+ P+ SA
Sbjct: 516 PAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSA 551
Score = 28.1 bits (61), Expect = 3.3
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 71 PGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKP---RPGELTPSQQLVC 127
PG +++ GP + Q P + P P + P + +KP +PG P
Sbjct: 446 PGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKP------ 499
Query: 128 PCSAAGATWSPPQR 141
P G+T PPQ+
Sbjct: 500 PSQQPGSTKPPPQQ 513
Score = 27.3 bits (59), Expect = 5.6
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 69 SQPGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTPSQQ 124
S PGA + P +P +Q P +G P P + +E P +L P +
Sbjct: 958 SGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKLEPKAE 1013
>gi|239747178 PREDICTED: hypothetical protein XP_002343932 [Homo
sapiens]
Length = 206
Score = 31.6 bits (70), Expect = 0.30
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 79 RGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTPSQQLVCPCSAAGATWSP 138
RGP+ Q G PP+ P R S RP A+G +SP
Sbjct: 35 RGPQHAAPPQANEG--SLSRFPPPRGPSPARS-SSGRPFHSATGSPATASTGASGGLYSP 91
Query: 139 PQRCLGS-------FGSHQRE 152
PQ+ LGS FGS QR+
Sbjct: 92 PQQKLGSGNLSHSAFGSRQRQ 112
>gi|68563515 keratinocyte proline-rich protein [Homo sapiens]
Length = 579
Score = 31.6 bits (70), Expect = 0.30
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 22/83 (26%)
Query: 62 TPRILILSQPGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTP 121
TPR + L +PG + ++ + RP CE PEP RP + P P P
Sbjct: 443 TPRPVPLPRPG----------QCEIPEPRPCLQPCEHPEPCPRP---EPIPLPAP---CP 486
Query: 122 SQQLVCPCSAAGATWSPPQRCLG 144
S + PC TW P C G
Sbjct: 487 SPE---PCR---ETWRSPSPCWG 503
>gi|4507233 suppressor of cytokine signaling 1 [Homo sapiens]
Length = 211
Score = 31.2 bits (69), Expect = 0.39
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 26/90 (28%)
Query: 82 RRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGE--------------LTPSQQLVC 127
RRP+ P S P P RPR V P PG+ +T + L+
Sbjct: 21 RRPE-----PSSSSSSSPAAPARPRPCPAVPAPAPGDTHFRTFRSHADYRRITRASALLD 75
Query: 128 PCSAAGATWSPPQRCLGSFGSHQRERPSPL 157
C G W P L G+H+R R P+
Sbjct: 76 AC---GFYWGP----LSVHGAHERLRAEPV 98
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 31.2 bits (69), Expect = 0.39
Identities = 29/80 (36%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 62 TPRILILSQPGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTP 121
TPR L S S R G R TQ RP P P RP PRP TP
Sbjct: 14 TPRPLPASAGAQGSQARSGLRLCRTTQGRPAGGASPPPSPRSRP---EGPGPPRPA--TP 68
Query: 122 SQQLVCPCSAAGATWSPPQR 141
S + S AG + P QR
Sbjct: 69 SARRPQGLS-AGVSAGPAQR 87
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 31.2 bits (69), Expect = 0.39
Identities = 29/80 (36%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 62 TPRILILSQPGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTP 121
TPR L S S R G R TQ RP P P RP PRP TP
Sbjct: 14 TPRPLPASAGAQGSQARSGLRLCRTTQGRPAGGASPPPSPRSRP---EGPGPPRPA--TP 68
Query: 122 SQQLVCPCSAAGATWSPPQR 141
S + S AG + P QR
Sbjct: 69 SARRPQGLS-AGVSAGPAQR 87
>gi|38569411 AP1 gamma subunit binding protein 1 isoform 2 [Homo
sapiens]
Length = 1302
Score = 31.2 bits (69), Expect = 0.39
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 106 RKWREVSKPRPGELTPSQQLVCPCSAA-GATWSPPQRCLGSFGSHQRERP 154
R +++ +K SQ+ CP A+ GA+ P C FG Q E+P
Sbjct: 983 RDYKDFTKQDLPTAERSQEATCPSPASSGASQETPNECSDDFGEFQSEKP 1032
>gi|38569409 AP1 gamma subunit binding protein 1 isoform 1 [Homo
sapiens]
Length = 1314
Score = 31.2 bits (69), Expect = 0.39
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 106 RKWREVSKPRPGELTPSQQLVCPCSAA-GATWSPPQRCLGSFGSHQRERP 154
R +++ +K SQ+ CP A+ GA+ P C FG Q E+P
Sbjct: 983 RDYKDFTKQDLPTAERSQEATCPSPASSGASQETPNECSDDFGEFQSEKP 1032
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 31.2 bits (69), Expect = 0.39
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 20/86 (23%)
Query: 71 PGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTPSQQLVCPCS 130
PG ++ RGP P PG SG + P PP P + ++ +P P + P Q
Sbjct: 36 PGMGLNQNRGPMGPG-----PGQSGPKPPIPPPPPHQQQQ--QPPPQQPPPQQ------- 81
Query: 131 AAGATWSPPQRCLGSFGSHQRERPSP 156
PP + HQ+++P P
Sbjct: 82 ------PPPHQPPPHPQPHQQQQPPP 101
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.8 bits (68), Expect = 0.51
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 72 GADSSRRR---GPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTPSQQLVCP 128
GA SRR GPRRP L G SG PP P E +P L
Sbjct: 201 GAPPSRRTPPPGPRRP-LRSPHSG-SGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLS 258
Query: 129 CSAAGATWSPPQRCLGSFGSHQRER 153
SA G W+ S SHQ ER
Sbjct: 259 FSARGLAWAGE-----SPASHQSER 278
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.8 bits (68), Expect = 0.51
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 72 GADSSRRR---GPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTPSQQLVCP 128
GA SRR GPRRP L G SG PP P E +P L
Sbjct: 201 GAPPSRRTPPPGPRRP-LRSPHSG-SGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLS 258
Query: 129 CSAAGATWSPPQRCLGSFGSHQRER 153
SA G W+ S SHQ ER
Sbjct: 259 FSARGLAWAGE-----SPASHQSER 278
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.8 bits (68), Expect = 0.51
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 72 GADSSRRR---GPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGELTPSQQLVCP 128
GA SRR GPRRP L G SG PP P E +P L
Sbjct: 201 GAPPSRRTPPPGPRRP-LRSPHSG-SGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLS 258
Query: 129 CSAAGATWSPPQRCLGSFGSHQRER 153
SA G W+ S SHQ ER
Sbjct: 259 FSARGLAWAGE-----SPASHQSER 278
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 30.4 bits (67), Expect = 0.67
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 71 PGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGE 118
P R PR+ L PG G EPEP R + + ++ PGE
Sbjct: 1602 PAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGE 1649
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 30.4 bits (67), Expect = 0.67
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 71 PGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVSKPRPGE 118
P R PR+ L PG G EPEP R + + ++ PGE
Sbjct: 1661 PAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGE 1708
>gi|148236531 hypothetical protein LOC339779 [Homo sapiens]
Length = 412
Score = 30.4 bits (67), Expect = 0.67
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 69 SQPGADSSRRRGPRRPDLTQNRPG--FSGCE----------EPEPPQRPRKWRE--VSKP 114
SQP S++ R P P PG F C+ P P P + + +S P
Sbjct: 47 SQPPFSSTQSRRPSSPPPASPSPGFQFGSCDSNSDFAPHPYSPSLPSSPTFFHQNYLSLP 106
Query: 115 RPGELTPSQQLVCPCSAAGATWSPPQ 140
RP +PS + P ++SP Q
Sbjct: 107 RPRASSPSNHWLYPSPPLTPSFSPSQ 132
>gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Homo
sapiens]
Length = 1288
Score = 30.0 bits (66), Expect = 0.87
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 90 RPGFSGCEEPEPPQRPRKWREVSK---PRPGELTPSQQLVCPCSAAGATWSPPQRCLGSF 146
+PG P PR S P T SQ CP + + SPP+RCL
Sbjct: 907 QPGKRSRSPSSPRHAPRPSDAPSASPTPSANSTTQSQTFPCPQAPSQHPPSPPKRCLSYG 966
Query: 147 GSHQRERPSPLSA 159
G+ Q P +A
Sbjct: 967 GTSQLRVPEEPAA 979
>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
Length = 1586
Score = 29.6 bits (65), Expect = 1.1
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 17/97 (17%)
Query: 23 DSGVDFLSAHIKGAVNIQQASLQGTLTTNISSLTHWILKTPRILILSQPGADSSRRR--- 79
D V ++ AH GA++ + T +T S PR L PG RR
Sbjct: 1064 DDVVQYIKAHASGALDEGTGQVYPTESTGFSD-------NPR---LPSPGLHGQRRMVAA 1113
Query: 80 ----GPRRPDLTQNRPGFSGCEEPEPPQRPRKWREVS 112
GP P L + GF P +W EVS
Sbjct: 1114 DSNVGPSAPMLGGCQLGFGAPSSLNKNNMPVQWNEVS 1150
>gi|17511255 poly(A) binding protein interacting protein 1 isoform 1
[Homo sapiens]
Length = 479
Score = 29.6 bits (65), Expect = 1.1
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 70 QPGADSSRRRGPRRPDLTQNRPGFSGCEEPEPPQRP-RKWREVSKPRPGELTPSQQLVCP 128
QP A + P R T PG + CE P PQRP R + RP PS Q P
Sbjct: 47 QPKAPGFLQPPPLRQPRTTPPPG-AQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIP 105
Query: 129 CSAAGATWSPPQ 140
+ + + PQ
Sbjct: 106 QQNSESAMAKPQ 117
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,149,032
Number of Sequences: 37866
Number of extensions: 432185
Number of successful extensions: 2034
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 1930
Number of HSP's gapped (non-prelim): 230
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.