Search of human proteins with 239745586

Search of human proteins with 239745586

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo
sapiens]
         (166 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756611 PREDICTED: hypothetical protein [Homo sapiens]           354   2e-98
gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo ...   354   2e-98
gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo ...   354   2e-98
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]        40   0.001
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi...    39   0.002
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...    39   0.003
gi|239752939 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...    39   0.003
gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo ...    39   0.003
gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo ...    39   0.003
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    39   0.003
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    39   0.003
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...    38   0.003
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...    38   0.003
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...    38   0.003
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...    38   0.003
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    36   0.013
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    36   0.013
gi|50083281 KIAA1853 protein [Homo sapiens]                            35   0.029
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             34   0.066
gi|38569475 metaxin 1 isoform 1 [Homo sapiens]                         33   0.086
gi|38569477 metaxin 1 isoform 2 [Homo sapiens]                         33   0.086
gi|239755599 PREDICTED: hypothetical protein XP_002344618 [Homo ...    33   0.086
gi|239750090 PREDICTED: hypothetical protein XP_002347290 [Homo ...    33   0.086
gi|239744399 PREDICTED: hypothetical protein XP_002343154 [Homo ...    33   0.086
gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo ...    33   0.11 
gi|13376611 zinc finger protein 703 [Homo sapiens]                     33   0.11 
gi|158508495 sex comb on midleg-like 4 [Homo sapiens]                  33   0.11 
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]            33   0.15 
gi|5031759 homeobox A11 [Homo sapiens]                                 32   0.19 

>gi|239756611 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 166

 Score =  354 bits (909), Expect = 2e-98
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
           MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF
Sbjct: 1   MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60

Query: 61  TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
           TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS
Sbjct: 61  TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120

Query: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166
           RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ
Sbjct: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166


>gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo
           sapiens]
          Length = 166

 Score =  354 bits (909), Expect = 2e-98
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
           MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF
Sbjct: 1   MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60

Query: 61  TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
           TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS
Sbjct: 61  TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120

Query: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166
           RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ
Sbjct: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166


>gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo
           sapiens]
          Length = 166

 Score =  354 bits (909), Expect = 2e-98
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
           MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF
Sbjct: 1   MMRAAHPLACHTTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60

Query: 61  TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
           TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS
Sbjct: 61  TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120

Query: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166
           RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ
Sbjct: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPSTRRLRWRQ 166


>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
          Length = 1378

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 77  RGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAA 136
           R   SRH  + SSS+S   G  S G  RP+Q+R R + T++ V+  + GP S   +  A+
Sbjct: 729 RPRRSRHGPASSSSSS--EGEDSAGPARPSQKRPRCSATAQRVAAWTPGPASNREAATAS 786

Query: 137 TPRS 140
           T R+
Sbjct: 787 TSRA 790


>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 673

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 7/145 (4%)

Query: 5   AHPLACHTTCSPLGS----SPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGF 60
           A P    +T SP GS    SP     TA   G+ +R   T + PS     ++ ST  +  
Sbjct: 455 ASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRT-PSRASLTKMESTASITR 513

Query: 61  TNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVS 120
           T +R        +A   G  S   A GS S +    TPS  +L  T  R  +T  SR   
Sbjct: 514 TPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTPSRASL 573

Query: 121 RCSSGPPSCARSTGAATPRSTGSPT 145
             +       R   +A+P  TG P+
Sbjct: 574 TRTPSTVLLTRMPPSASP--TGMPS 596



 Score = 37.0 bits (84), Expect = 0.008
 Identities = 46/159 (28%), Positives = 62/159 (38%), Gaps = 15/159 (9%)

Query: 12  TTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTR----RLSSTRRLGFTNTRRGK 67
           +T SP G+ P           +  RKP   S P+G ++R    ++ ST     T  R   
Sbjct: 381 STASPTGTPPRASPTGTPSTASLTRKPPRAS-PTGMLSRTSITKMDSTASPTRTPPRASP 439

Query: 68  GSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGA-------LRPTQRRRRITWTSRCVS 120
                 A   G  SR S +G+ S ++  G+PS  +         PT    R + T R  S
Sbjct: 440 TGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLT-RTPS 498

Query: 121 RCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGPST 159
           R S        S    TP S  SPTW       +G PST
Sbjct: 499 RASLTKMESTASI-TRTP-SRASPTWTPSTASPTGSPST 535


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 34  QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
           + RK  + S  S     R SST   G  T+T    GS   SA  R G S  S S SSS+S
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS--STSRSSSSS 118

Query: 93  TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
           +  G+PS    R   RRR         SR  S PP
Sbjct: 119 SSSGSPSPSRRRHDNRRR---------SRSKSKPP 144



 Score = 27.7 bits (60), Expect = 4.7
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 30  KRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSS 89
           K  T+A  P      S + ++  S  +     ++ + +G      R +    R ++SGSS
Sbjct: 20  KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG------RDKTRKRRSASSGSS 73

Query: 90  SASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTC 149
           S                  R R + TS   S  S+G  S + S+ A++   + S +  + 
Sbjct: 74  ST-----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS 116

Query: 150 ENGGSGGPSTRRLR 163
            +  SG PS  R R
Sbjct: 117 SSSSSGSPSPSRRR 130


>gi|239752939 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 310

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 42  SQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTC------- 94
           + P+G++ RR S+  R        G GS+W  A         SAS SSSA  C       
Sbjct: 170 ASPAGRLRRRGSTGLRA--QGASAGSGSVWPRAA--SCLRASSASRSSSARACSLSRSRA 225

Query: 95  -RGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP-SCARSTGAATPRSTGSPTWHTCENG 152
            R   S     P++R+RR +  S    RCS+    +C      A P    SP+     + 
Sbjct: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHS 285

Query: 153 GS--GGPSTRR 161
            S   GPS  R
Sbjct: 286 FSRRSGPSGNR 296


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 34  QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
           + RK  + S  S     R SST   G  T+T    GS   SA  R G S  S S SSS+S
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS--STSRSSSSS 118

Query: 93  TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
           +  G+PS    R   RRR         SR  S PP
Sbjct: 119 SSSGSPSPSRRRHDNRRR---------SRSKSKPP 144



 Score = 27.7 bits (60), Expect = 4.7
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 30  KRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSS 89
           K  T+A  P      S + ++  S  +     ++ + +G      R +    R ++SGSS
Sbjct: 20  KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG------RDKTRKRRSASSGSS 73

Query: 90  SASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTC 149
           S                  R R + TS   S  S+G  S + S+ A++   + S +  + 
Sbjct: 74  ST-----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS 116

Query: 150 ENGGSGGPSTRRLR 163
            +  SG PS  R R
Sbjct: 117 SSSSSGSPSPSRRR 130


>gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo
           sapiens]
          Length = 310

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 42  SQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTC------- 94
           + P+G++ RR S+  R        G GS+W  A         SAS SSSA  C       
Sbjct: 170 ASPAGRLRRRGSTGLRA--QGASAGSGSVWPRAA--SCLRASSASRSSSARACSLSRSRA 225

Query: 95  -RGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP-SCARSTGAATPRSTGSPTWHTCENG 152
            R   S     P++R+RR +  S    RCS+    +C      A P    SP+     + 
Sbjct: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHS 285

Query: 153 GS--GGPSTRR 161
            S   GPS  R
Sbjct: 286 FSRRSGPSGNR 296


>gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo
           sapiens]
          Length = 310

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 42  SQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTC------- 94
           + P+G++ RR S+  R        G GS+W  A         SAS SSSA  C       
Sbjct: 170 ASPAGRLRRRGSTGLRA--QGASAGSGSVWPRAA--SCLRASSASRSSSARACSLSRSRA 225

Query: 95  -RGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP-SCARSTGAATPRSTGSPTWHTCENG 152
            R   S     P++R+RR +  S    RCS+    +C      A P    SP+     + 
Sbjct: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHS 285

Query: 153 GS--GGPSTRR 161
            S   GPS  R
Sbjct: 286 FSRRSGPSGNR 296


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 34  QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
           + RK  + S  S     R SST   G  T+T    GS   SA  R G S  S S SSS+S
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS--STSRSSSSS 118

Query: 93  TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
           +  G+PS    R   RRR         SR  S PP
Sbjct: 119 SSSGSPSPSRRRHDNRRR---------SRSKSKPP 144



 Score = 27.7 bits (60), Expect = 4.7
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 30  KRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSS 89
           K  T+A  P      S + ++  S  +     ++ + +G      R +    R ++SGSS
Sbjct: 20  KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG------RDKTRKRRSASSGSS 73

Query: 90  SASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTC 149
           S                  R R + TS   S  S+G  S + S+ A++   + S +  + 
Sbjct: 74  ST-----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS 116

Query: 150 ENGGSGGPSTRRLR 163
            +  SG PS  R R
Sbjct: 117 SSSSSGSPSPSRRR 130


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 34  QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
           + RK  + S  S     R SST   G  T+T    GS   SA  R G S  S S SSS+S
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS--STSRSSSSS 118

Query: 93  TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
           +  G+PS    R   RRR         SR  S PP
Sbjct: 119 SSSGSPSPSRRRHDNRRR---------SRSKSKPP 144



 Score = 27.7 bits (60), Expect = 4.7
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 30  KRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSS 89
           K  T+A  P      S + ++  S  +     ++ + +G      R +    R ++SGSS
Sbjct: 20  KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG------RDKTRKRRSASSGSS 73

Query: 90  SASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTC 149
           S                  R R + TS   S  S+G  S + S+ A++   + S +  + 
Sbjct: 74  ST-----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS 116

Query: 150 ENGGSGGPSTRRLR 163
            +  SG PS  R R
Sbjct: 117 SSSSSGSPSPSRRR 130


>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 34  QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
           + RK  + S  S     R SST   G  T+T    GS   SA  R G S  S S SSS+S
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 93  TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
           +  G+PS    R   RRR         SR  S PP
Sbjct: 121 S--GSPSPSRRRHDNRRR---------SRSKSKPP 144



 Score = 30.0 bits (66), Expect = 0.95
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 82  RHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRST 141
           RHSAS  SS++                R R + TS   S  S+G  S + S+ A++   +
Sbjct: 65  RHSASSGSSST----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108

Query: 142 GSPTWHTCENGGSGGPSTRRLR 163
            S +  +  +  SG PS  R R
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRR 130


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 34  QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
           + RK  + S  S     R SST   G  T+T    GS   SA  R G S  S S SSS+S
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 93  TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
           +  G+PS    R   RRR         SR  S PP
Sbjct: 121 S--GSPSPSRRRHDNRRR---------SRSKSKPP 144



 Score = 30.0 bits (66), Expect = 0.95
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 82  RHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRST 141
           RHSAS  SS++                R R + TS   S  S+G  S + S+ A++   +
Sbjct: 65  RHSASSGSSST----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108

Query: 142 GSPTWHTCENGGSGGPSTRRLR 163
            S +  +  +  SG PS  R R
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRR 130


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 34  QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
           + RK  + S  S     R SST   G  T+T    GS   SA  R G S  S S SSS+S
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 93  TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
           +  G+PS    R   RRR         SR  S PP
Sbjct: 121 S--GSPSPSRRRHDNRRR---------SRSKSKPP 144



 Score = 30.0 bits (66), Expect = 0.95
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 82  RHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRST 141
           RHSAS  SS++                R R + TS   S  S+G  S + S+ A++   +
Sbjct: 65  RHSASSGSSST----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108

Query: 142 GSPTWHTCENGGSGGPSTRRLR 163
            S +  +  +  SG PS  R R
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRR 130


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 34  QARKPATLSQPSGKVTRRLSSTRRLGF-TNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
           + RK  + S  S     R SST   G  T+T    GS   SA  R G S  S S SSS+S
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 93  TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP 127
           +  G+PS    R   RRR         SR  S PP
Sbjct: 121 S--GSPSPSRRRHDNRRR---------SRSKSKPP 144



 Score = 30.0 bits (66), Expect = 0.95
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 82  RHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRST 141
           RHSAS  SS++                R R + TS   S  S+G  S + S+ A++   +
Sbjct: 65  RHSASSGSSST----------------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108

Query: 142 GSPTWHTCENGGSGGPSTRRLR 163
            S +  +  +  SG PS  R R
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRR 130


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 38  PATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGT 97
           P  LS PS       ++  R GF+   RG+G    +A  RG    H A G   A      
Sbjct: 269 PRLLSMPSAAARPCGAALPRSGFSGRPRGRGG---AAAGRGSRGEHPACGVGLARGTAPQ 325

Query: 98  PSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGP 157
           P+       + R   TWTSR  ++       CA   G    R       H  E      P
Sbjct: 326 PASTWALAARPRAGGTWTSRFEAQ-----RGCAHQDGQRRTRDGAGN--HASEPARVWSP 378

Query: 158 STRRLRWRQ 166
             RR R R+
Sbjct: 379 PPRRQRPRR 387


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 38  PATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGT 97
           P  LS PS       ++  R GF+   RG+G    +A  RG    H A G   A      
Sbjct: 269 PRLLSMPSAAARPCGAALPRSGFSGRPRGRGG---AAAGRGSRGEHPACGVGLARGTAPQ 325

Query: 98  PSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTCENGGSGGP 157
           P+       + R   TWTSR  ++       CA   G    R       H  E      P
Sbjct: 326 PASTWALAARPRAGGTWTSRFEAQ-----RGCAHQDGQRRTRDGAGN--HASEPARVWSP 378

Query: 158 STRRLRWRQ 166
             RR R R+
Sbjct: 379 PPRRQRPRR 387


>gi|50083281 KIAA1853 protein [Homo sapiens]
          Length = 611

 Score = 35.0 bits (79), Expect = 0.029
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 30  KRGTQARK-PATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGS 88
           +R T ARK P    +PS   +  LSST     +++ R     +  +R R    R S + +
Sbjct: 507 RRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSRSRRRSRTRT 566

Query: 89  SSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPS 128
           SS+S+ R +PS G+   ++ R R    SR  SR  S   S
Sbjct: 567 SSSSSSR-SPSPGSRSRSRSRSRSRSRSRSQSRSYSSADS 605



 Score = 33.1 bits (74), Expect = 0.11
 Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 44  PSGKVTRRLSSTRRLGFTNTR---RGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSC 100
           PS    RR++S R+      R      GS+  ++ W    S  SAS S S S  R     
Sbjct: 501 PSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSR--- 557

Query: 101 GALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRS 140
                  RRR  T TS   S  S  P S +RS   +  RS
Sbjct: 558 ------SRRRSRTRTSSSSSSRSPSPGSRSRSRSRSRSRS 591


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 33.9 bits (76), Expect = 0.066
 Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 33  TQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSAS 92
           + +R P+ LS       R+  S R  G  +     GS W S +  GG  + S +      
Sbjct: 270 SDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPG 329

Query: 93  TCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPRSTGSPTWHTCENG 152
           +    P     +P+    R+          ++ P   AR   + +PRS  S         
Sbjct: 330 SAHSPPD----KPSSPSPRVR-----DKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAA 380

Query: 153 GSGGPSTRRLRWRQ 166
           G  G   RR R R+
Sbjct: 381 GGAGRRRRRRRRRR 394


>gi|38569475 metaxin 1 isoform 1 [Homo sapiens]
          Length = 466

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 29  WKRGTQARKPATLSQPSG----KVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHS 84
           W R T+ R P   + PSG      TRR  + RR G T   R  G +W   R     +R  
Sbjct: 35  WPRRTRPRSPEPAA-PSGVRGSTWTRRRDTPRRAGPTALSRYVGHLWMGRRPPSPEARGP 93

Query: 85  ASGSSSASTCRGTPSCGALRP 105
              SS+AS  R + +   + P
Sbjct: 94  VPRSSAASRARRSLASPGISP 114


>gi|38569477 metaxin 1 isoform 2 [Homo sapiens]
          Length = 435

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 29  WKRGTQARKPATLSQPSG----KVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHS 84
           W R T+ R P   + PSG      TRR  + RR G T   R  G +W   R     +R  
Sbjct: 35  WPRRTRPRSPEPAA-PSGVRGSTWTRRRDTPRRAGPTALSRYVGHLWMGRRPPSPEARGP 93

Query: 85  ASGSSSASTCRGTPSCGALRP 105
              SS+AS  R + +   + P
Sbjct: 94  VPRSSAASRARRSLASPGISP 114


>gi|239755599 PREDICTED: hypothetical protein XP_002344618 [Homo
           sapiens]
          Length = 109

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)

Query: 44  PSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGAL 103
           PS   TR  +S  R   T+ R+ + +  R  RW    SR + S  S A++   +P+  + 
Sbjct: 19  PSFPATRGAASAWR---TSVRQPRKAARRPCRWWPRRSRATRSTISVAASA--SPAAASR 73

Query: 104 RPTQRRRRITW---TSRCVSRCSSGPPSCA--RSTGA 135
            P  R+RR  W   ++R  S  S  P SCA  RST A
Sbjct: 74  APGARKRR--WKRSSARTSSELSPPPCSCASRRSTSA 108


>gi|239750090 PREDICTED: hypothetical protein XP_002347290 [Homo
           sapiens]
          Length = 109

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)

Query: 44  PSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGAL 103
           PS   TR  +S  R   T+ R+ + +  R  RW    SR + S  S A++   +P+  + 
Sbjct: 19  PSFPATRGAASAWR---TSVRQPRKAARRPCRWWPRRSRATRSTISVAASA--SPAAASR 73

Query: 104 RPTQRRRRITW---TSRCVSRCSSGPPSCA--RSTGA 135
            P  R+RR  W   ++R  S  S  P SCA  RST A
Sbjct: 74  APGARKRR--WKRSSARTSSELSPPPCSCASRRSTSA 108


>gi|239744399 PREDICTED: hypothetical protein XP_002343154 [Homo
           sapiens]
          Length = 109

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)

Query: 44  PSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGAL 103
           PS   TR  +S  R   T+ R+ + +  R  RW    SR + S  S A++   +P+  + 
Sbjct: 19  PSFPATRGAASAWR---TSVRQPRKAARRPCRWWPRRSRATRSTISVAASA--SPAAASR 73

Query: 104 RPTQRRRRITW---TSRCVSRCSSGPPSCA--RSTGA 135
            P  R+RR  W   ++R  S  S  P SCA  RST A
Sbjct: 74  APGARKRR--WKRSSARTSSELSPPPCSCASRRSTSA 108


>gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo
           sapiens]
          Length = 790

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 80  HSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAATPR 139
           H+RH   G   A     T +   +  T  +R     S  +S  +S PPSC + + +   R
Sbjct: 512 HTRHLDPGKCQACLQDVTRTFNGICSTCFKRTTAEASSSLS--TSLPPSCHQRSKSDPSR 569

Query: 140 STGSPTWHTCENGGSGGPS 158
              SP+ H+C   G+  P+
Sbjct: 570 LVRSPSPHSCHRAGNDAPA 588


>gi|13376611 zinc finger protein 703 [Homo sapiens]
          Length = 590

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 14/151 (9%)

Query: 13  TCSPLG------SSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRG 66
           TCS +G      SS    +  A   G  A K    S P        ++ ++LG  +    
Sbjct: 95  TCSQIGKPDPPPSSKLNSVAAA-ANGLGAEKDPGRSAPGA--ASAAAALKQLG-DSPAED 150

Query: 67  KGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGP 126
           K S    ++  GG      SGSSS S+   T S  +  P  +      ++ C      G 
Sbjct: 151 KSSFKPYSKGSGGGDSRKDSGSSSVSS---TSSSSSSSPGDKAGFRVPSAACPPFPPHGA 207

Query: 127 PSCARSTGAATPRSTG-SPTWHTCENGGSGG 156
           P  A S+ ++   S G SP    C+NGG  G
Sbjct: 208 PVSASSSSSSPGGSRGGSPHHSDCKNGGGVG 238


>gi|158508495 sex comb on midleg-like 4 [Homo sapiens]
          Length = 414

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 78  GGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCARSTGAAT 137
           GG    +A G  ++    G PS   LRP     +   TS   +RC+S P   A+   A  
Sbjct: 280 GGGPAATAGGPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQDAQD--ARR 337

Query: 138 PRSTGSPTW 146
           PRS     W
Sbjct: 338 PRSRNPSAW 346


>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 375

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 12  TTCSPLGSSPAKEICTAWKRGTQARKPATLSQPSGKVTRRLSSTRRLGFTNTRRGKGSIW 71
           +TCS   S  +   C+    GT +       Q SG      +S+    + ++R       
Sbjct: 211 STCSCQSSGTSSTSCSCQSSGTSS---TCSCQSSG------TSSTSCSWQSSRTSSTCSC 261

Query: 72  RSARWRGGHSRHSASGSSSASTCRGTPSCGALRPTQRRRRITWTSRCVSRCSSGPPSCAR 131
           +S+R         +SG+SS  +C+ + +       Q  R  +  S   SR SS   SC  
Sbjct: 262 QSSRTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSSTCSCQFSRTSSTSCSCQS 321

Query: 132 STGAATPRSTGSPTWHT-CENGGSGGPST 159
           S  ++T     S T  T C    SG  ST
Sbjct: 322 SRTSSTCSCQSSGTSSTSCICWSSGTSST 350


>gi|5031759 homeobox A11 [Homo sapiens]
          Length = 313

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 125 GPPSCARSTGAATPRSTGSPTWHTCENGGSGG 156
           GPP+   ++ AA   +TG+P   + ++GG GG
Sbjct: 168 GPPAATATSAAAAAAATGAPATSSSDSGGGGG 199


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.125    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,453,073
Number of Sequences: 37866
Number of extensions: 423185
Number of successful extensions: 2079
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 1926
Number of HSP's gapped (non-prelim): 230
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.