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Search of human proteins with 239745563
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745563 PREDICTED: hypothetical protein [Homo sapiens]
(349 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756584 PREDICTED: hypothetical protein [Homo sapiens] 709 0.0
gi|239751076 PREDICTED: hypothetical protein [Homo sapiens] 709 0.0
gi|239745563 PREDICTED: hypothetical protein [Homo sapiens] 709 0.0
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ... 35 0.100
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ... 35 0.100
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 34 0.17
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 34 0.17
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 34 0.17
gi|148727255 microtubule associated serine/threonine kinase fami... 34 0.17
gi|113423529 PREDICTED: hypothetical protein [Homo sapiens] 34 0.22
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 33 0.38
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 33 0.38
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 33 0.38
gi|167466198 intercellular adhesion molecule 1 precursor [Homo s... 33 0.50
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 32 0.65
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 32 0.65
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 32 0.65
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 32 0.65
gi|188536004 zinc finger protein 469 [Homo sapiens] 32 0.65
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 32 0.65
gi|116805330 small conductance calcium-activated potassium chann... 32 0.85
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 32 0.85
gi|239753461 PREDICTED: hypothetical protein XP_002345664 [Homo ... 32 0.85
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 32 0.85
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 32 0.85
gi|21040251 actin-binding Rho activating protein [Homo sapiens] 32 0.85
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 32 1.1
gi|89027843 PREDICTED: hypothetical protein LOC441328 [Homo sapi... 32 1.1
gi|51466913 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|113419951 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
>gi|239756584 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 709 bits (1830), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60
MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC
Sbjct: 1 MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60
Query: 61 RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120
RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS
Sbjct: 61 RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120
Query: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180
KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR
Sbjct: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180
Query: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240
QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA
Sbjct: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240
Query: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300
ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR
Sbjct: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300
Query: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349
GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL
Sbjct: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349
>gi|239751076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 709 bits (1830), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60
MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC
Sbjct: 1 MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60
Query: 61 RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120
RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS
Sbjct: 61 RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120
Query: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180
KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR
Sbjct: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180
Query: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240
QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA
Sbjct: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240
Query: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300
ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR
Sbjct: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300
Query: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349
GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL
Sbjct: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349
>gi|239745563 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 709 bits (1830), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60
MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC
Sbjct: 1 MGSAHRALLTSRSISALGTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCC 60
Query: 61 RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120
RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS
Sbjct: 61 RALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPSRLFLKPPIEVEDDAWGIKKMTGKEDS 120
Query: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180
KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR
Sbjct: 121 KDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRAR 180
Query: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240
QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA
Sbjct: 181 QIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRA 240
Query: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300
ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR
Sbjct: 241 ELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDPRGGSRDSPEALASLR 300
Query: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349
GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL
Sbjct: 301 GRRAARSQSGPISLLFDDRATRETKIQPEGAPPFPLITLHLGETSGYNL 349
>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.100
Identities = 43/145 (29%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 169 RPASVPRLRRARQIKADFTGKVVSERAGLVPVPET---SAA----RRAALGTQGW----G 217
R A+ P R Q ++ G + + G VP SAA RR+ + W G
Sbjct: 161 RSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARG 220
Query: 218 PWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLG-HNLGSPSARGPSRSSRENEKEIG 276
P R +RS PR P + R+E P ++ G G RGP R E G
Sbjct: 221 RGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGG 280
Query: 277 YALDTKEDPRGGSRDSPEALASLRG 301
A + RGG P LA +RG
Sbjct: 281 LA-----EVRGG----PGGLAEVRG 296
>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
sapiens]
Length = 296
Score = 35.0 bits (79), Expect = 0.100
Identities = 43/145 (29%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 169 RPASVPRLRRARQIKADFTGKVVSERAGLVPVPET---SAA----RRAALGTQGW----G 217
R A+ P R Q ++ G + + G VP SAA RR+ + W G
Sbjct: 124 RSATTPNRGRGEQKRSGQLGDIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARG 183
Query: 218 PWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLG-HNLGSPSARGPSRSSRENEKEIG 276
P R +RS PR P + R+E P ++ G G RGP R E G
Sbjct: 184 RGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSGG 243
Query: 277 YALDTKEDPRGGSRDSPEALASLRG 301
A + RGG P LA +RG
Sbjct: 244 LA-----EVRGG----PGGLAEVRG 259
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 34.3 bits (77), Expect = 0.17
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 199 PVPETSAARRAALGTQGWGPWPT-----RGQRSPLAPRG 232
P ETS ARRA Q WG WPT RG+R RG
Sbjct: 166 PAGETSGARRARGELQAWGAWPTWCGAGRGRRGRGESRG 204
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 34.3 bits (77), Expect = 0.17
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 199 PVPETSAARRAALGTQGWGPWPT-----RGQRSPLAPRG 232
P ETS ARRA Q WG WPT RG+R RG
Sbjct: 166 PAGETSGARRARGELQAWGAWPTWCGAGRGRRGRGESRG 204
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 34.3 bits (77), Expect = 0.17
Identities = 40/121 (33%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 220 PTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSREN---EKEIG 276
P R+P +P LEV E QP++R L SPS+ P SS E+G
Sbjct: 526 PISSPRAPQTRAVKPRLEVSPEAQPTAR----LPSPTDSPSSLPPLPSSSGQASVPSELG 581
Query: 277 YALDTKEDPRGGSRDSPEALASLRGRRAAR-SQSGPI-SLLFDDRATRETKIQPEGAPPF 334
+ DT+ S +SP +SL AA S S PI S DR + + EG P
Sbjct: 582 HGADTQ------SSESPSVFSSLSSPIAAPISTSTPIESWPLVDRG----QAKSEGPPLL 631
Query: 335 P 335
P
Sbjct: 632 P 632
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 34.3 bits (77), Expect = 0.17
Identities = 56/244 (22%), Positives = 90/244 (36%), Gaps = 37/244 (15%)
Query: 112 KKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPA 171
K G E + L S P +E+ ++K+ P L + AK+ +++ QP + P+
Sbjct: 1885 KVRRGVEPKPEALLARRSLQPPGIES-EKSEKLSSFPSLQ-KDGAKEPERKEQPLQRHPS 1942
Query: 172 SVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPR 231
S+P T K +S A S A G + P+ + P P
Sbjct: 1943 SIP--------PPPLTAKDLSSPAARQHCSSPSHASGREPGAKPSTAEPSSSPQDPPKP- 1993
Query: 232 GRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKE-------- 283
V A + SS G + G P + P RS + +G A KE
Sbjct: 1994 ------VAAHSESSSHKP-RPGPDPGPPKTKHPDRSLSSQKPSVG-ATKGKEPATQSLGG 2045
Query: 284 ---DPRGGSRDSPEALASLRGRR------AARSQSGPISLLFDDRATRETKIQP-EGAPP 333
+ +G S+ P+ + G + + + GP L DRA + K QP G P
Sbjct: 2046 SSREGKGHSKSGPDVFPATPGSQNKASDGIGQGEGGPSVPLHTDRAPLDAKPQPTSGGRP 2105
Query: 334 FPLI 337
++
Sbjct: 2106 LEVL 2109
>gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
Length = 276
Score = 33.9 bits (76), Expect = 0.22
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 119 DSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRR 178
+SK F W + PS P + +P GRA D L P G P +P L
Sbjct: 140 ESKSFPW----PFSPSTLPLPDSLPLPPS---GGRAGPGWGDSHLAPAWGLPRRLPLLAA 192
Query: 179 ARQIKADFTGKVVSERAGLVPVPETSAAR---RAALGTQGWGPWPTRGQRSPLAPRGR 233
AR + G + A L +P +A R + G + G +R +PL PRGR
Sbjct: 193 AR---SGALGGMFPTAAPLYSLPLFVSAGPRCRRSWGFRAPGAPLSRAGGTPLGPRGR 247
>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 33.1 bits (74), Expect = 0.38
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 3 SAHRALLTSRSISAL-GTGRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCCR 61
SAH L + A G G GR GL P + PA + PR P CC
Sbjct: 56 SAHLKLSAASDWRAQRGPGEGR----GLRHWPRGAP-VTVPAARRPAPAPRGPKQPGCCA 110
Query: 62 ALWEQRRGSFLLEGGSAGPWGLEGRTWSFSRPS 94
AL G + G W L G TW PS
Sbjct: 111 AL---------AGGDTNGEWILRGSTWGLCPPS 134
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 33.1 bits (74), Expect = 0.38
Identities = 66/232 (28%), Positives = 89/232 (38%), Gaps = 50/232 (21%)
Query: 134 SVETWPGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRARQ--IKADFTGKVV 191
+++TW G+++ G A+ Q D L T G S+ R +R R+ +K +V
Sbjct: 2964 ALQTW-GSERRLGLDTSKDAANNNQPDPAL--TSGDETSLGRAQRQRKGILKNRLQYPLV 3020
Query: 192 SERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLAPRGRPALEVRAELQPSSRG--- 248
+ G PE S R A LG + P A G +L QP+SR
Sbjct: 3021 PQTRG---APELSWCRAATLGHRAV---PAASYGRIYAGGGTGSLS-----QPASRYSSR 3069
Query: 249 ---DLLLGHNLG--------SPSARGPSRSS----------RENEKEIGYALDTKEDPRG 287
DLLL L +P R SR R K+ G L ++ PR
Sbjct: 3070 EQLDLLLRRQLSRERLEEAPAPVLRPLSRPGSQECMDAAPGRLEPKDRGSTLPRRQPPR- 3128
Query: 288 GSRDSPEALASLRGRRAARSQSGP---ISLLFDDRATRETKIQPEGAPPFPL 336
D P A+A G R A P +S L R TR+ QP PP PL
Sbjct: 3129 ---DYPGAMAGRFGSRDALDLGAPREWLSTLPPPRRTRDLDPQP---PPLPL 3174
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 33.1 bits (74), Expect = 0.38
Identities = 40/119 (33%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 139 PGAQKVPGGPYLAGRASAKQVDKELQPTRGR------PASVPRLRRARQIKADFTGKVVS 192
PGAQ G L GRA+ + K TRGR P PR R A+ +G+ S
Sbjct: 361 PGAQAATRG--LPGRAARR---KPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGS 415
Query: 193 ERAGLVP--VPETSAARRAALGTQGWGPWPTRGQRSPLAPRGR--PALEVRAELQPSSR 247
RA ETS RA+ G +PT + P PR R PA + A+ S R
Sbjct: 416 PRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRPPRPRRGPAPTLAAQAAGSCR 474
Score = 30.4 bits (67), Expect = 2.5
Identities = 71/317 (22%), Positives = 97/317 (30%), Gaps = 70/317 (22%)
Query: 49 SQPRAPLTTDCCRALWEQRRGSFLLEGGSAGPWGLEG-----RTWSFSRPSRLFL----- 98
+ P AP A+ + GGSAGP R F PS L
Sbjct: 169 ASPSAPEVVGARAAVPRSFSAPYPTAGGSAGPEACSSAERRARAGPFLTPSPLHAVAMRS 228
Query: 99 -----KPPIEVEDDAWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGR 153
+PP + D + + G + L + T PG GGP
Sbjct: 229 PRPCGRPPTDSPDAGGAGRPLDGYISA--LLRRRRRRGAGQPRTSPGG--ADGGPRRQNS 284
Query: 154 ASAKQVDKELQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGT 213
+ D P RPA P L ER G P + +R A
Sbjct: 285 VRQRPPDASPSPGSARPAREPSL----------------ERVGGHPTSPAALSRAWA--- 325
Query: 214 QGWGPWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARG-----PSRSS 268
W + P AP P+ P S + L P A+ P R++
Sbjct: 326 ---SSWESEAAPEPAAPPAAPS-------PPDSPAEGRLVKAQYIPGAQAATRGLPGRAA 375
Query: 269 RENEKEIGYALDTKEDP----------RGGSRDSPEALASLRGRRAARSQSGPISLLFDD 318
R + ++ P RG ++ S R R+A+RSQS SLL
Sbjct: 376 RRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRSQS-ETSLLGRA 434
Query: 319 RATRETKIQPEGAPPFP 335
A P G P +P
Sbjct: 435 SAV------PSGPPKYP 445
>gi|167466198 intercellular adhesion molecule 1 precursor [Homo
sapiens]
Length = 532
Score = 32.7 bits (73), Expect = 0.50
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 170 PASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRSPLA 229
PA+ P+L R ++ D G VV GL PV E A ALG Q P T G S A
Sbjct: 215 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSE--AQVHLALGDQRLNPTVTYGNDSFSA 272
Query: 230 PRGRPALEVRAELQPSSR 247
+ ++ V AE + + R
Sbjct: 273 ---KASVSVTAEDEGTQR 287
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 32.3 bits (72), Expect = 0.65
Identities = 53/198 (26%), Positives = 67/198 (33%), Gaps = 24/198 (12%)
Query: 140 GAQKVPGGPYLAGRASAKQVDKELQPTRGRP-ASVPRLRRARQIKADFTGKVVSERAGLV 198
G + PG P G A + + L RGRP A P R G
Sbjct: 284 GPKGEPGSPGENG-APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP 342
Query: 199 PVPETSAARRAALGTQG----WGPWPTRGQRSPLAPRGR--PALEVRAELQPSSRGDLL- 251
P + + G QG GP RG+ P P G PA A+ QP ++G
Sbjct: 343 PGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA 402
Query: 252 --LGHNLGSPSARGPSRSS--------RENEKEIGYA-----LDTKEDPRGGSRDSPEAL 296
+ G P ARGPS + N E G K +P P
Sbjct: 403 PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462
Query: 297 ASLRGRRAARSQSGPISL 314
A G+R AR + GP L
Sbjct: 463 AGEEGKRGARGEPGPTGL 480
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 32.3 bits (72), Expect = 0.65
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 103 EVEDDAWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKE 162
E E D G K G+E+ + + + D E G V GG +L GR +++
Sbjct: 741 EQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSR 800
Query: 163 LQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTR 222
+ A L +R ++ D GK+ + L P P A + A G
Sbjct: 801 DRAPAVAGAFPLGLNSSRLLQED--GKLGDPGSDLPPPPPPPLAPQKASG---------G 849
Query: 223 GQRSPLAPRGRPALEVRAELQPSSR 247
G SP +P P+LE + + S +
Sbjct: 850 GSSSPGSPVHHPSLEEQPSYKDSQK 874
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 32.3 bits (72), Expect = 0.65
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 103 EVEDDAWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKE 162
E E D G K G+E+ + + + D E G V GG +L GR +++
Sbjct: 741 EQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSR 800
Query: 163 LQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTR 222
+ A L +R ++ D GK+ + L P P A + A G
Sbjct: 801 DRAPAVAGAFPLGLNSSRLLQED--GKLGDPGSDLPPPPPPPLAPQKASG---------G 849
Query: 223 GQRSPLAPRGRPALEVRAELQPSSR 247
G SP +P P+LE + + S +
Sbjct: 850 GSSSPGSPVHHPSLEEQPSYKDSQK 874
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 32.3 bits (72), Expect = 0.65
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 103 EVEDDAWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKE 162
E E D G K G+E+ + + + D E G V GG +L GR +++
Sbjct: 741 EQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSR 800
Query: 163 LQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTR 222
+ A L +R ++ D GK+ + L P P A + A G
Sbjct: 801 DRAPAVAGAFPLGLNSSRLLQED--GKLGDPGSDLPPPPPPPLAPQKASG---------G 849
Query: 223 GQRSPLAPRGRPALEVRAELQPSSR 247
G SP +P P+LE + + S +
Sbjct: 850 GSSSPGSPVHHPSLEEQPSYKDSQK 874
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 32.3 bits (72), Expect = 0.65
Identities = 60/253 (23%), Positives = 91/253 (35%), Gaps = 32/253 (12%)
Query: 108 AWGIKKMTGKEDSKDFLWNGPSQYDPSVETWPGAQKVPGGPYLAGRASAKQVDKELQPTR 167
AWG + + K+ L +YD + E+ Q P GP GR + KE++ T+
Sbjct: 1045 AWGKELILKIVQQKNRL----REYDFASESEEDEQPPPRGPGFRGRRGRGEKRKEVELTQ 1100
Query: 168 GRPASVP-RLRRARQIKADFTGKVVSERAGLVPVPETSAARRAALGTQGWGPWPTRGQRS 226
G P + R+A + +A G + PE R G P+R +
Sbjct: 1101 GPREDEPQKPRKAARQEAGGDGAPAN--------PEEPGGSRPGPGRSPQARGPSRSLET 1152
Query: 227 PLAPR-GRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIGYALDTKEDP 285
A R G P R + P + L + N + PS + KE +T E+
Sbjct: 1153 GAAAREGGPKCADRPSVAP--KDPLQVPTNTETSEETRPSLDFPQEAKE----PETAEES 1206
Query: 286 RGGSRDSPEALASLRGRRAARSQSGPISLLFD-------DRATRE-----TKIQPEGAPP 333
S + EAL S A + P L+ + D T + P G+ P
Sbjct: 1207 APDSTEFTEALRSPPAACAGEMGASPGLLIPEQPPPSRHDTGTPKPSGSLANTAPHGSSP 1266
Query: 334 FPLITLHLGETSG 346
P + LG G
Sbjct: 1267 TPGVGSLLGGPGG 1279
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 32.3 bits (72), Expect = 0.65
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 147 GPYLAGRASAKQVDKELQPT--RGRPA-----SVPRLRRARQIKADFTGKVVSERAGLVP 199
GP L GR+ A++ Q T R RPA S PR R ++KA T R
Sbjct: 107 GPGLGGRSGAEEASGHRQDTEERARPAPSRDPSPPRKPRPSRVKAKATAATAKTRPS--- 163
Query: 200 VPETSAARRAAL 211
T+AAR+ AL
Sbjct: 164 AAATAAARKRAL 175
>gi|116805330 small conductance calcium-activated potassium channel
protein 3 isoform a [Homo sapiens]
Length = 731
Score = 32.0 bits (71), Expect = 0.85
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 226 SPLAPRGRPALEVRAELQPSSR-------GDLLLGHNLGSPSARGPSRSSRENE 272
SP A R P+ A L PSSR D LLGH+ S + GP SR +
Sbjct: 104 SPTAFRAPPSSNSTAILHPSSRQGSQLNLNDHLLGHSPSSTATSGPGGGSRHRQ 157
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 32.0 bits (71), Expect = 0.85
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 214 QGWGPWPTRGQRSPLAPRGRPALEVR---AELQPSSRGDLLLGH-----NLGSPSARGPS 265
QG G P +G+ S L + A E R + Q ++ DL GH + GSP+ P+
Sbjct: 3 QGLGESPHKGE-SELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPA---PT 58
Query: 266 RSSRENEKEIGYALDTKEDPRGGSRDSPEALASLRGRRAARSQSGP 311
+ K +G + P R +P A A RR S +GP
Sbjct: 59 IRAHTRRKALGPG---ERGPEASPRPAPRARAHAHSRRLPASPTGP 101
>gi|239753461 PREDICTED: hypothetical protein XP_002345664 [Homo
sapiens]
Length = 114
Score = 32.0 bits (71), Expect = 0.85
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 139 PGAQKVPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRARQIKADFTGKVVSERAGLV 198
P PG P + R D+ + +R +P RLRR R G VV+ G
Sbjct: 48 PARSHEPGNPQVEQRRPLASADEPARRSRRQPLGASRLRRRRD-----RGPVVAVNTGPG 102
Query: 199 PVPETSAARRAA 210
V S AR AA
Sbjct: 103 RVRSHSVARMAA 114
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 32.0 bits (71), Expect = 0.85
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 214 QGWGPWPTRGQRSPLAPRGRPALEVR---AELQPSSRGDLLLGH-----NLGSPSARGPS 265
QG G P +G+ S L + A E R + Q ++ DL GH + GSP+ P+
Sbjct: 3 QGLGESPHKGE-SELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPA---PT 58
Query: 266 RSSRENEKEIGYALDTKEDPRGGSRDSPEALASLRGRRAARSQSGP 311
+ K +G + P R +P A A RR S +GP
Sbjct: 59 IRAHTRRKALGPG---ERGPEASPRPAPRARAHAHSRRLPASPTGP 101
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 32.0 bits (71), Expect = 0.85
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 214 QGWGPWPTRGQRSPLAPRGRPALEVR---AELQPSSRGDLLLGH-----NLGSPSARGPS 265
QG G P +G+ S L + A E R + Q ++ DL GH + GSP+ P+
Sbjct: 3 QGLGESPHKGE-SELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPA---PT 58
Query: 266 RSSRENEKEIGYALDTKEDPRGGSRDSPEALASLRGRRAARSQSGP 311
+ K +G + P R +P A A RR S +GP
Sbjct: 59 IRAHTRRKALGPG---ERGPEASPRPAPRARAHAHSRRLPASPTGP 101
>gi|21040251 actin-binding Rho activating protein [Homo sapiens]
Length = 381
Score = 32.0 bits (71), Expect = 0.85
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 208 RAALGTQGWGPWPTRGQRSPLAPR--GRPALEVRAELQPSSRGDLLLGHNLGSPSARGPS 265
R A GW P T Q SP AP+ P +A+ P S L GH G S + P
Sbjct: 43 RQAQEPTGWLPGGT--QDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAP- 99
Query: 266 RSSRENEKEIGYALDTKEDPRGG 288
S +KE+ + +K RGG
Sbjct: 100 EVSHIKKKEVSKTVVSKTYERGG 122
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 31.6 bits (70), Expect = 1.1
Identities = 68/244 (27%), Positives = 89/244 (36%), Gaps = 23/244 (9%)
Query: 20 GRGRDALPGLASSHTALPNLASPAIQPTVSQPRAPLTTDCCRALWEQRRGS-FLLEGGSA 78
G G D + A P + SP + P + AL Q R S F A
Sbjct: 118 GEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKA 177
Query: 79 GPWGLEGRTWSFSR-----PSRLFLKPPIEVEDDAWGIKKMTGKEDSKDFLWNGPSQYDP 133
GP GL +S S P L+L D G+ G ++ L++G +P
Sbjct: 178 GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQ--NP 235
Query: 134 SVETWPGAQK-----VPGGPYLAGRASAKQVDKELQPTRGRPASVPRLRRA-RQIKADFT 187
PG +PGGP + A A++V + P R P S L + R A T
Sbjct: 236 CSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPAT 295
Query: 188 GKVVSERAGLVPVPETSAARRAALGTQGWG-PWPTR--GQRSP--LAPRGRPALEVRAEL 242
S P P S LG G PWPT G+RSP +P P RA
Sbjct: 296 FLRPSPIPCSSPGPWQSL---CGLGPPCAGCPWPTAGPGRRSPGGTSPERSPG-TARARG 351
Query: 243 QPSS 246
P+S
Sbjct: 352 DPTS 355
>gi|89027843 PREDICTED: hypothetical protein LOC441328 [Homo
sapiens]
Length = 464
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 217 GPWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIG 276
GP P + PR P L R+ + S RG +L + ++ S S E++ G
Sbjct: 148 GPMPVH--TTSKRPRVDPVLADRSATEMSGRGSVLASLSPLRKASLSSSSSLGPKERQTG 205
Query: 277 YALD-------------------TKEDPRGGSRDSPEALASLRG-RRAARSQS 309
A D T P GG R+ P+A + G +AAR Q+
Sbjct: 206 AAADIPQPAFRHQGPEPLLVVKPTHSSPEGGCREVPQAASKTHGLLQAARPQA 258
>gi|51466913 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 217 GPWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIG 276
GP P + PR P L R+ + S RG +L + ++ S S E++ G
Sbjct: 148 GPMPVH--TTSKRPRVDPVLADRSAAEMSGRGSVLASLSPLRKASLSSSSSLGPKERQTG 205
Query: 277 YALD-------------------TKEDPRGGSRDSPEALASLRG-RRAARSQS 309
A D T P GG R+ P+A + G +AAR Q+
Sbjct: 206 AAADMPQPAVRHQGREPLLVVKPTHSSPEGGCREVPQAASKTHGLLQAARPQA 258
>gi|113419951 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 217 GPWPTRGQRSPLAPRGRPALEVRAELQPSSRGDLLLGHNLGSPSARGPSRSSRENEKEIG 276
GP P + PR P L R+ + S RG +L + ++ S S E++ G
Sbjct: 148 GPMPVH--TTSKRPRVDPVLADRSAAEMSGRGSVLASLSPLRKASLSSSSSLGPKERQTG 205
Query: 277 YALD-------------------TKEDPRGGSRDSPEALASLRG-RRAARSQS 309
A D T P GG R+ P+A + G +AAR Q+
Sbjct: 206 AAADMPQPAVRHQGREPLLVVKPTHSSPEGGCREVPQAASKTHGLLQAARPQA 258
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,168,735
Number of Sequences: 37866
Number of extensions: 904868
Number of successful extensions: 2693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 2640
Number of HSP's gapped (non-prelim): 167
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.