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Search of human proteins with 239745240
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo
sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756354 PREDICTED: hypothetical protein [Homo sapiens] 229 3e-61
gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo ... 229 3e-61
gi|239750880 PREDICTED: hypothetical protein XP_002347591 [Homo ... 225 7e-60
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 39 7e-04
gi|54873613 agrin [Homo sapiens] 39 9e-04
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 39 0.001
gi|213513324 hypothetical protein LOC401115 [Homo sapiens] 37 0.003
gi|27734799 REST corepressor 2 [Homo sapiens] 37 0.004
gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens] 36 0.008
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 35 0.010
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 35 0.013
gi|239745123 PREDICTED: hypothetical protein XP_002343373 [Homo ... 35 0.013
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 35 0.013
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 35 0.013
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 35 0.013
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.022
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 34 0.022
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 34 0.022
gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo ... 34 0.029
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 34 0.029
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 34 0.029
gi|239757158 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo ... 33 0.038
gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo ... 33 0.038
gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo ... 33 0.038
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|239746157 PREDICTED: hypothetical protein XP_002343679 [Homo ... 33 0.038
gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo ... 33 0.038
>gi|239756354 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 229 bits (585), Expect = 3e-61
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MRLRKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAP 60
MRLRKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAP
Sbjct: 1 MRLRKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAP 60
Query: 61 APSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRLQ 110
APSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRLQ
Sbjct: 61 APSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRLQ 110
>gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo
sapiens]
Length = 110
Score = 229 bits (585), Expect = 3e-61
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MRLRKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAP 60
MRLRKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAP
Sbjct: 1 MRLRKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAP 60
Query: 61 APSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRLQ 110
APSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRLQ
Sbjct: 61 APSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRLQ 110
>gi|239750880 PREDICTED: hypothetical protein XP_002347591 [Homo
sapiens]
Length = 110
Score = 225 bits (573), Expect = 7e-60
Identities = 109/110 (99%), Positives = 109/110 (99%)
Query: 1 MRLRKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAP 60
MRLRKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAP
Sbjct: 1 MRLRKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAP 60
Query: 61 APSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRLQ 110
APSRSPDPSK LAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRLQ
Sbjct: 61 APSRSPDPSKRLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRLQ 110
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 39.3 bits (90), Expect = 7e-04
Identities = 35/111 (31%), Positives = 39/111 (35%), Gaps = 31/111 (27%)
Query: 15 PHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPA---------------- 58
PHW R A R G RS +W +R A C ACA P
Sbjct: 47 PHWGPQRGPRNAAAARPGPRS----RWHKRCAAA-CGACARPPGHQLQPPGAGAPQPGVA 101
Query: 59 ----APAPSRSP-----DPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGS 100
P P R+P P C A PR R +P P PG PP A S
Sbjct: 102 CSYLGPRPQRTPCSAQSRPGWC-AGPRRRHAPGTEPHVAPGRAPPPRAGAS 151
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 38.9 bits (89), Expect = 9e-04
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 43 RRLLARNCTACAALPAAPAPSRSPDP-SKCLAPPRSRRSPLRAPAPLPGNRVP 94
R A + A P AP PS + P +K A P +RR P AP+ +PG R P
Sbjct: 1272 RATTASRLPSSAVTPRAPHPSHTSQPVAKTTAAPTTRRPPTTAPSRVPGRRPP 1324
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 38.5 bits (88), Expect = 0.001
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 18 PMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRSPDPSKCLAPPRS 77
P P P RR+ + Q RR + +C P+ RSP P C +P
Sbjct: 359 PCPPCQSPVPQRRSPVPPCPSPQQRRSPASPSC------PSPVPQRRSPVPPSCQSPSPQ 412
Query: 78 RRSPLRAPAPLPGNRVPP 95
RRSP+ P P R PP
Sbjct: 413 RRSPVPPSCPAPQPRPPP 430
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 57 PAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRR 108
P+ PA + P P C +P RRSP+ P P P R P + S P RR
Sbjct: 350 PSPPARAAPPCPP-CQSPVPQRRSPV-PPCPSPQQRRSPASPSCPSPVPQRR 399
Score = 29.3 bits (64), Expect = 0.71
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 20/97 (20%)
Query: 16 HWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRSPDPSKCLAPP 75
H P++ R PA + SP R A C C + P P R C +P
Sbjct: 334 HSPLSQ--RHSPAPQCPSPSPPARA------APPCPPCQS----PVPQRRSPVPPCPSP- 380
Query: 76 RSRRSPLR--APAPLPGNR--VPPHAAGSFSQSPLRR 108
+ RRSP P+P+P R VPP S SP RR
Sbjct: 381 QQRRSPASPSCPSPVPQRRSPVPPSCQ---SPSPQRR 414
>gi|213513324 hypothetical protein LOC401115 [Homo sapiens]
Length = 139
Score = 37.4 bits (85), Expect = 0.003
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 32 GLRSPRERQWRRRLLARNCTAC--AALPAAPAPSRSPDPSKCLAPPRSRRSPLRAPAP 87
G+ S R R RR RN C AA P P P +P P +APP + RSP+ P P
Sbjct: 6 GVGSERMRVARR---TRNVCRCPRAAGPGVPEPRAAPLPLLAMAPPPACRSPMSPPPP 60
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 36.6 bits (83), Expect = 0.004
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 10 LEEVMPHW-------PMAPVAREGPARRAGLRSPR-ERQWRRRLLARNCTACAALPAAPA 61
LEEV+ W P APV E R A L +P E ++ + + + ++P AP
Sbjct: 379 LEEVLQEWEAEQDGAPGAPVPMEEARRGAPLPAPALEEDDEVQITSVSTSVPRSVPPAPP 438
Query: 62 PSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPL 106
P P P+ PP R PL AP + PP G F Q L
Sbjct: 439 PP--PPPTSLSQPPPLLRPPL-PTAPTLLRQPPPLQQGRFLQPRL 480
>gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
Length = 269
Score = 35.8 bits (81), Expect = 0.008
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 12 EVMPHWPMAPVAREGPARRAGLRSPRERQWRR-----RLLARNCTACAALPAAPAPSRSP 66
E++P P P+ GP A RE W LL ACA + A + P
Sbjct: 99 ELLPGGPARPL---GPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQP 155
Query: 67 DPSKCLAPPRSRRSPLRAPAPLP------GNRVPPHAAGSFSQ 103
P PPRS SP + PAP P G R P + + Q
Sbjct: 156 TPPTSPEPPRS--SPRQTPAPGPAREKSAGKRGPDRGSPEYRQ 196
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 52 ACAALPAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPG 90
A A APAP+ SP P++ A P S R P APAP+ G
Sbjct: 713 AVAVASPAPAPAPSPAPARAQA-PASARDPAPAPAPVAG 750
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 15 PHWPMAPVA-REGPARRAG-LRSPRERQWRRRLLARNCTACAALPAAPAPSRSPDPSKCL 72
P P+ P+ +G +AG L SP RQ + A P AP +P P L
Sbjct: 300 PALPLQPLGGHKGTGYQAGGLGSPYLRQQAAQAPYIPPLGLDAYPYPSAPLPAPSPGLKL 359
Query: 73 APPRSRRSPL 82
PP + R PL
Sbjct: 360 EPPLTPRCPL 369
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 18 PMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRSP------DPSKC 71
PM AR A A + ER+ R AR C+ + + PSR+P +
Sbjct: 192 PMPRAARSARAATAARAAAAEREEAREERARGCSEASRTSSDSGPSRAPAARVVGGEAAA 251
Query: 72 LAPPRSR-RSPLRAPAPLP 89
A R+R R+PL A +P+P
Sbjct: 252 TAAARARPRAPLAAGSPVP 270
>gi|239745123 PREDICTED: hypothetical protein XP_002343373 [Homo
sapiens]
Length = 205
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 30 RAGLRSPRERQWRRRLLARN------CTACAALPAAPAPSRS-------PDPSKCLAPPR 76
R GL + ER R L+A N C L A R P P ++PP
Sbjct: 16 RQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGARLGLEPKPKAAVSPP- 74
Query: 77 SRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
S R P + P P P PP+ AG FS + R
Sbjct: 75 SCRVPAQLPCPRPAAVFPPNWAGRFSAAGFR 105
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 17 WPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRS----PDPSKCL 72
W AP + A R R+R W RRL AAPAP R P P
Sbjct: 85 WTAAPGRQRADEGAAAARPERQRVWARRL--------PGSAAAPAPGRDALRLPPPPP-- 134
Query: 73 APPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRR 108
PP R P A P + PP A + P R
Sbjct: 135 PPPERPRLPPAGLAGGPADSAPPSPAPAPRSRPAPR 170
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 54 AALPAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQS 104
+++P P+PS P + +SR P+ +PA +PG+++PP GS S+S
Sbjct: 671 SSIPGGPSPSPVGSP---VGSNQSRSGPI-SPASIPGSQMPPQPPGSQSES 717
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 54 AALPAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQS 104
+++P P+PS P + +SR P+ +PA +PG+++PP GS S+S
Sbjct: 658 SSIPGGPSPSPVGSP---VGSNQSRSGPI-SPASIPGSQMPPQPPGSQSES 704
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 54 AALPAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQS 104
+++P P+PS P + +SR P+ +PA +PG+++PP GS S+S
Sbjct: 658 SSIPGGPSPSPVGSP---VGSNQSRSGPI-SPASIPGSQMPPQPPGSQSES 704
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 52 ACAALPAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRL 109
A L P+P SP S PP PL AP PL + PP A + + PL+ L
Sbjct: 475 AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP-PLQLAKPPPQAPPALATPPLQAL 531
Score = 32.3 bits (72), Expect = 0.084
Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 20 APVAREGPARRAGLRSPRERQWRRRLL-----ARNCTACAALPAAPAPSRSPDPSKCLA- 73
+P AR P+ GL+ P R AR+ + P APA P P A
Sbjct: 221 SPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQAL 280
Query: 74 ------PPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSP 105
PPR +P P P +A SQ+P
Sbjct: 281 RPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAP 318
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 57 PAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
P+A PS++P PS P + SP +P P PP A + PL+
Sbjct: 462 PSATPPSQAP-PSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQ 511
Score = 26.2 bits (56), Expect = 6.0
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 24/102 (23%)
Query: 18 PMAPVAREGPARRAGLRSP-RERQWRRRLL----------ARNCTACAALPAAPAPSRSP 66
P++ AR GP+ R R+P Q + + L R A A P + +P +P
Sbjct: 248 PLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATP 307
Query: 67 DPSKCL---APPRSRRSP--------LRAPAPL--PGNRVPP 95
PS L APP +P L P PL P PP
Sbjct: 308 SPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPP 349
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 12 EVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRSPDPSKC 71
EV P P A + R G RR L W+ R A A +A A P P P+P
Sbjct: 37 EVRPRPPPARLPRNG--RRGPL-------WKGRGPAGRAPAASAETALPRPREPPEPGAG 87
Query: 72 LAPPRS------RRSPLRAPAPLPGN 91
+P RS R S L AP P G+
Sbjct: 88 PSPKRSPPPRAPRASSLAAPEPQVGD 113
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 52 ACAALPAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLRRL 109
A L P+P SP S PP PL AP PL + PP A + + PL+ L
Sbjct: 436 AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP-PLQLAKPPPQAPPALATPPLQAL 492
Score = 32.0 bits (71), Expect = 0.11
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 20 APVAREGPARRAGLRSPRERQWRRRLL-----ARNCTACAALPAAPAPSRSPDPSKCLAP 74
+P AR P+ GL+ P R AR+ + P APA P P A
Sbjct: 212 SPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQA- 270
Query: 75 PRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPL 106
LR P P + A G S SPL
Sbjct: 271 -------LRPPQVTPPRKDAAPALGPLSSSPL 295
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 57 PAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
P+A PS++P PS P + SP +P P PP A + PL+
Sbjct: 423 PSATPPSQAP-PSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQ 472
Score = 27.7 bits (60), Expect = 2.1
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 18 PMAPVAREGPARRAGLRSP-RERQWRRRLL----------ARNCTACAALPAAPAPSRSP 66
P++ AR GP+ R R+P Q + + L R A A P + +P +P
Sbjct: 239 PLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATP 298
Query: 67 DPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
PS APP P P P P A S L+
Sbjct: 299 SPS---APPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQ 336
>gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo
sapiens]
Length = 284
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 52 ACAALPAAPAPSRSPDPSK-----CLAPPRSRRSPLRAPAPL 88
AC+ AAPAP P PS C APP RR P P PL
Sbjct: 18 ACSLPTAAPAPPLRPSPSSKTVLGCQAPP--RRPPSSTPCPL 57
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.9 bits (76), Expect = 0.029
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 18 PMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRS----PDPSKCLA 73
P P +R GP S + RL RN + ++ P P+P RS P PS+
Sbjct: 309 PPPPPSRPGPPPLPPSSSGNDET--PRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPP 366
Query: 74 PP----RSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
PP R PL P P+ N A + Q P R
Sbjct: 367 PPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSR 404
Score = 32.3 bits (72), Expect = 0.084
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 56 LPAAPAPSRSPDPSKCLAP----PRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPL 106
+P+ P P +S ++ P PR + SP P P PGNR GS QSPL
Sbjct: 187 VPSTPRPIQSSPHNRGSPPVPGGPR-QPSPGPTPPPFPGNRGTALGGGSIRQSPL 240
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 21 PVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRSPDPSKCLAPPRSRRS 80
P R+ P R L P ++RN + ALPA P + P S +P R
Sbjct: 367 PPVRDPPGRSGPLPPPPP-------VSRNGSTSRALPATP---QLPSRSGVDSPRSGPRP 416
Query: 81 PLRAPAPLPGNRVPPHAAGS----FSQSP 105
PL P G PP + S F SP
Sbjct: 417 PLPPDRPSAGAPPPPPPSTSIRNGFQDSP 445
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.9 bits (76), Expect = 0.029
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 18 PMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRS----PDPSKCLA 73
P P +R GP S + RL RN + ++ P P+P RS P PS+
Sbjct: 309 PPPPPSRPGPPPLPPSSSGNDET--PRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPP 366
Query: 74 PP----RSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
PP R PL P P+ N A + Q P R
Sbjct: 367 PPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSR 404
Score = 32.3 bits (72), Expect = 0.084
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 56 LPAAPAPSRSPDPSKCLAP----PRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPL 106
+P+ P P +S ++ P PR + SP P P PGNR GS QSPL
Sbjct: 187 VPSTPRPIQSSPHNRGSPPVPGGPR-QPSPGPTPPPFPGNRGTALGGGSIRQSPL 240
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 21 PVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRSPDPSKCLAPPRSRRS 80
P R+ P R L P ++RN + ALPA P + P S +P R
Sbjct: 367 PPVRDPPGRSGPLPPPPP-------VSRNGSTSRALPATP---QLPSRSGVDSPRSGPRP 416
Query: 81 PLRAPAPLPGNRVPPHAAGS----FSQSP 105
PL P G PP + S F SP
Sbjct: 417 PLPPDRPSAGAPPPPPPSTSIRNGFQDSP 445
>gi|239757158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 33.5 bits (75), Expect = 0.038
Identities = 34/91 (37%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 20 APVAREGPARRAGLRSPRERQWRRRL--LARNCTACAALPAAPAPSRSPDPSKCLAPPRS 77
+P R PA A RS R R L R CAALP+ PS P PS+ PP S
Sbjct: 63 SPPPRPSPALSA--RSSRRALARTALPGRGRGAPGCAALPSR-LPSPRPRPSRRAPPPVS 119
Query: 78 RRSPL-----------RAPAPLP--GNRVPP 95
RR+ R PA P G RV P
Sbjct: 120 RRTARGWEPGPTLGRPRGPARRPPLGGRVSP 150
>gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo
sapiens]
Length = 209
Score = 33.5 bits (75), Expect = 0.038
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 17 WPMAPVAREGPA---RRAGLRSPRERQWRRRLLA--RNCTACAALPAAPAPSRSPDPSKC 71
W + REG RR L P W R+ A C C LP P R P
Sbjct: 118 WRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPG---- 173
Query: 72 LAPPRSRRSPLRAPAPLPGNRVPPHAA 98
L P +P +P P PP +A
Sbjct: 174 LPYPGGLAAPRASPPQHPNRAAPPASA 200
Score = 27.7 bits (60), Expect = 2.1
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 38 ERQWRRRLLARNCTACA--ALPAAPAPSRS---------PDPSKCLAPPRSRRSPLRAPA 86
+R WR RL R P P PS S ++CL P RR P R P
Sbjct: 115 DRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLP-PRRGPPRPPG 173
Query: 87 -PLPGNRVPPHAA 98
P PG P A+
Sbjct: 174 LPYPGGLAAPRAS 186
>gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo
sapiens]
Length = 150
Score = 33.5 bits (75), Expect = 0.038
Identities = 34/91 (37%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 20 APVAREGPARRAGLRSPRERQWRRRL--LARNCTACAALPAAPAPSRSPDPSKCLAPPRS 77
+P R PA A RS R R L R CAALP+ PS P PS+ PP S
Sbjct: 63 SPPPRPSPALSA--RSSRRALARTALPGRGRGAPGCAALPSR-LPSPRPRPSRRAPPPVS 119
Query: 78 RRSPL-----------RAPAPLP--GNRVPP 95
RR+ R PA P G RV P
Sbjct: 120 RRTARGWEPGPTLGRPRGPARRPPLGGRVSP 150
>gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo
sapiens]
Length = 209
Score = 33.5 bits (75), Expect = 0.038
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 17 WPMAPVAREGPA---RRAGLRSPRERQWRRRLLA--RNCTACAALPAAPAPSRSPDPSKC 71
W + REG RR L P W R+ A C C LP P R P
Sbjct: 118 WRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPG---- 173
Query: 72 LAPPRSRRSPLRAPAPLPGNRVPPHAA 98
L P +P +P P PP +A
Sbjct: 174 LPYPGGLAAPRASPPQHPNRAAPPASA 200
Score = 27.7 bits (60), Expect = 2.1
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 38 ERQWRRRLLARNCTACA--ALPAAPAPSRS---------PDPSKCLAPPRSRRSPLRAPA 86
+R WR RL R P P PS S ++CL P RR P R P
Sbjct: 115 DRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLP-PRRGPPRPPG 173
Query: 87 -PLPGNRVPPHAA 98
P PG P A+
Sbjct: 174 LPYPGGLAAPRAS 186
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 53 CAALPAAPAPSRSPDPSKCLAP--PRSRRSPLRAPAPLPGNRVPPHAAGSFSQSP 105
C PA PAPS SP PS+ P P S S P R P S P
Sbjct: 34 CPPSPARPAPSASPSPSRAAGPFLPPSHASTSSRSPPPRARRTEPAVPPSCGSGP 88
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 54 AALPAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
+A AAP+P P P L P +RR+PL P P P S S SP R
Sbjct: 5 SAARAAPSPILPPPPD--LPPTPTRRAPLIGCPPSPARPAP-----SASPSPSR 51
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 33.5 bits (75), Expect = 0.038
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 20 APVARE----GPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPSRSPDPSKCLAPP 75
AP ARE G R G P R ++ +A+ A + +RSP P L P
Sbjct: 228 APRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPP---LQPR 284
Query: 76 RSRRSPLRAPAPLPGNRVP 94
SP R APL G+R P
Sbjct: 285 LGSASPPRLAAPLAGSRAP 303
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 54 AALPAAPAPSRSPDPSKCLAPPRSRRSPLRAPAPLP 89
A L + APS SP P +C R+ RSP PLP
Sbjct: 295 APLAGSRAPSLSPFPRRCRR--RAERSPAGHGLPLP 328
>gi|239746157 PREDICTED: hypothetical protein XP_002343679 [Homo
sapiens]
Length = 150
Score = 33.5 bits (75), Expect = 0.038
Identities = 34/91 (37%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 20 APVAREGPARRAGLRSPRERQWRRRL--LARNCTACAALPAAPAPSRSPDPSKCLAPPRS 77
+P R PA A RS R R L R CAALP+ PS P PS+ PP S
Sbjct: 63 SPPPRPSPALSA--RSSRRALARTALPGRGRGAPGCAALPSR-LPSPRPRPSRRAPPPVS 119
Query: 78 RRSPL-----------RAPAPLP--GNRVPP 95
RR+ R PA P G RV P
Sbjct: 120 RRTARGWEPGPTLGRPRGPARRPPLGGRVSP 150
>gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo
sapiens]
Length = 209
Score = 33.5 bits (75), Expect = 0.038
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 17 WPMAPVAREGPA---RRAGLRSPRERQWRRRLLA--RNCTACAALPAAPAPSRSPDPSKC 71
W + REG RR L P W R+ A C C LP P R P
Sbjct: 118 WRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPG---- 173
Query: 72 LAPPRSRRSPLRAPAPLPGNRVPPHAA 98
L P +P +P P PP +A
Sbjct: 174 LPYPGGLAAPRASPPQHPNRAAPPASA 200
Score = 27.7 bits (60), Expect = 2.1
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 38 ERQWRRRLLARNCTACA--ALPAAPAPSRS---------PDPSKCLAPPRSRRSPLRAPA 86
+R WR RL R P P PS S ++CL P RR P R P
Sbjct: 115 DRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLP-PRRGPPRPPG 173
Query: 87 -PLPGNRVPPHAA 98
P PG P A+
Sbjct: 174 LPYPGGLAAPRAS 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,814,685
Number of Sequences: 37866
Number of extensions: 373533
Number of successful extensions: 5015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 561
Number of HSP's that attempted gapping in prelim test: 3755
Number of HSP's gapped (non-prelim): 1707
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.