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Search of human proteins with 239744784
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744784 PREDICTED: hypothetical protein XP_002343271 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755963 PREDICTED: similar to hCG2019585 [Homo sapiens] 259 2e-70
gi|239750485 PREDICTED: hypothetical protein XP_002347420 [Homo ... 259 2e-70
gi|239744784 PREDICTED: hypothetical protein XP_002343271 [Homo ... 259 2e-70
gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo... 36 0.007
gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo... 36 0.007
gi|45238854 basic leucine zipper transcription factor, ATF-like ... 33 0.048
gi|30425462 hypothetical protein LOC284185 [Homo sapiens] 32 0.11
gi|22547204 hairless protein isoform a [Homo sapiens] 28 1.6
gi|22547207 hairless protein isoform b [Homo sapiens] 28 1.6
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 28 1.6
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 28 2.0
gi|239747859 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo ... 28 2.0
gi|187761351 growth factor independent 1 [Homo sapiens] 27 2.6
gi|187761349 growth factor independent 1 [Homo sapiens] 27 2.6
gi|71037377 growth factor independent 1 [Homo sapiens] 27 2.6
gi|38194224 G protein-coupled receptor 25 [Homo sapiens] 27 2.6
gi|112821688 G protein-regulated inducer of neurite outgrowth 2 ... 27 2.6
gi|38488767 microtubule associated serine/threonine kinase famil... 27 3.5
gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens] 27 4.5
gi|38569423 ATP citrate lyase isoform 2 [Homo sapiens] 27 4.5
gi|38569421 ATP citrate lyase isoform 1 [Homo sapiens] 27 4.5
gi|169215211 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|89058383 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|89058207 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 27 4.5
gi|150456444 hypothetical protein LOC57578 [Homo sapiens] 27 4.5
gi|30387642 late cornified envelope 4A [Homo sapiens] 26 5.9
gi|46255049 HMT1 hnRNP methyltransferase-like 1 [Homo sapiens] 26 5.9
>gi|239755963 PREDICTED: similar to hCG2019585 [Homo sapiens]
Length = 117
Score = 259 bits (663), Expect = 2e-70
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60
MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC
Sbjct: 1 MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60
Query: 61 CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117
CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF
Sbjct: 61 CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117
>gi|239750485 PREDICTED: hypothetical protein XP_002347420 [Homo
sapiens]
Length = 117
Score = 259 bits (663), Expect = 2e-70
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60
MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC
Sbjct: 1 MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60
Query: 61 CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117
CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF
Sbjct: 61 CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117
>gi|239744784 PREDICTED: hypothetical protein XP_002343271 [Homo
sapiens]
Length = 117
Score = 259 bits (663), Expect = 2e-70
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60
MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC
Sbjct: 1 MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60
Query: 61 CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117
CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF
Sbjct: 61 CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117
>gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo
sapiens]
Length = 747
Score = 35.8 bits (81), Expect = 0.007
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 2 PLPPCVVSTLQDFILGHPKAEDIAGQQEIHG 32
P P ++S LQD++ GHP+A AGQQE G
Sbjct: 182 PHLPALLSALQDYLSGHPEAGHSAGQQETGG 212
>gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo
sapiens]
Length = 901
Score = 35.8 bits (81), Expect = 0.007
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 2 PLPPCVVSTLQDFILGHPKAEDIAGQQEIHG 32
P P ++S LQD++ GHP+A AGQQE G
Sbjct: 336 PHLPALLSALQDYLSGHPEAGHSAGQQETGG 366
>gi|45238854 basic leucine zipper transcription factor, ATF-like 2
[Homo sapiens]
Length = 274
Score = 33.1 bits (74), Expect = 0.048
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 22 EDIAGQQEIHGASRKTSKRWWSRGRHTQTAVC-----NCAAAGCCGCW 64
+++A ++EI S + WWSR H +C +C+A G GCW
Sbjct: 55 DNLALRKEIQ--SLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCW 100
>gi|30425462 hypothetical protein LOC284185 [Homo sapiens]
Length = 264
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 13/107 (12%)
Query: 1 MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWW------SRGRHTQTAVCN 54
+P PP V T + HP A +++H AS W G Q AV
Sbjct: 14 LPRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAVPQ 73
Query: 55 CAAAGCCGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLL 101
WPA S + R+ + G T G W P G L
Sbjct: 74 RPTRPSKALWPAQMSAAPAI--RLGQMVPGDTRG-----LWGPQGTL 113
>gi|22547204 hairless protein isoform a [Homo sapiens]
Length = 1189
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 59 GCCGCWPAVHSGHTGLCHRMQAVAGGGTAG 88
GCC +P G G C + Q GG +G
Sbjct: 325 GCCSSYPPTKGGGLGPCGKCQEGLEGGASG 354
>gi|22547207 hairless protein isoform b [Homo sapiens]
Length = 1134
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 59 GCCGCWPAVHSGHTGLCHRMQAVAGGGTAG 88
GCC +P G G C + Q GG +G
Sbjct: 325 GCCSSYPPTKGGGLGPCGKCQEGLEGGASG 354
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 45 GRHTQTAVCNCAAAGCCGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEE 104
G T A+ A+ G C P SG GL M A + R+ A GLL+EE
Sbjct: 1427 GMETGEALSFGASPGRCPARPPP-SGSQGLLEEMLAASSSKAVARRESAASGLGGLLEEE 1485
Query: 105 G 105
G
Sbjct: 1486 G 1486
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 42 WSRGRHTQTAVCNCAAAGCCGCWPAVHSGHTGLCHRMQAV----AGGGTAGRQGLCAWKP 97
WS+G + A +A+ C W V G R+Q AGGG R G A +
Sbjct: 787 WSQGEAGKGASLPSSASWRCALWHRVWQGRRRARRRLQQQTKEGAGGGAGTRAGWLATEA 846
Query: 98 AGLLQEEGCRMLQLRPDS 115
+ +G + RP++
Sbjct: 847 QVTQELKGLSGGEERPET 864
>gi|239747859 PREDICTED: hypothetical protein [Homo sapiens]
Length = 595
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 24 IAGQQEIHGASRKTSKRW------WSRGRHTQTAVCNCAAAGCCGCWPAVHSGHTGLCHR 77
+ GQ ++ GAS TS+R W + + Q A C C+ + G P ++
Sbjct: 461 LVGQTDVDGAS--TSERLPNLGHPWPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPA 518
Query: 78 MQAVAGGGTAGRQGLCAWKP 97
+ A A T G AW P
Sbjct: 519 VVAAAAAATGGD----AWCP 534
>gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo
sapiens]
Length = 404
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 24 IAGQQEIHGASRKTSKRW------WSRGRHTQTAVCNCAAAGCCGCWPAVHSGHTGLCHR 77
+ GQ ++ GAS TS+R W + + Q A C C+ + G P ++
Sbjct: 270 LVGQTDVDGAS--TSERLPNLGHPWPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPA 327
Query: 78 MQAVAGGGTAGRQGLCAWKP 97
+ A A T G AW P
Sbjct: 328 VVAAAAAATGGD----AWCP 343
>gi|187761351 growth factor independent 1 [Homo sapiens]
Length = 422
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 63 CWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCA 94
C PA GH + + AGG AG G C+
Sbjct: 155 CEPAPEPGHPAALYGPKRAAGGAGAGAPGSCS 186
>gi|187761349 growth factor independent 1 [Homo sapiens]
Length = 422
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 63 CWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCA 94
C PA GH + + AGG AG G C+
Sbjct: 155 CEPAPEPGHPAALYGPKRAAGGAGAGAPGSCS 186
>gi|71037377 growth factor independent 1 [Homo sapiens]
Length = 422
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 63 CWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCA 94
C PA GH + + AGG AG G C+
Sbjct: 155 CEPAPEPGHPAALYGPKRAAGGAGAGAPGSCS 186
>gi|38194224 G protein-coupled receptor 25 [Homo sapiens]
Length = 361
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 55 CAAAGCCGCWP-AVHSGHTGLCHR-MQAVAGGGTAGRQGLCAWKPAGLLQ 102
CA A CCG W A+ +G L +R +Q + G G+ C +P+ Q
Sbjct: 155 CALASCCGVWAVALLAGLPSLVYRGLQPLPG----GQDSQCGEEPSHAFQ 200
>gi|112821688 G protein-regulated inducer of neurite outgrowth 2
[Homo sapiens]
Length = 458
Score = 27.3 bits (59), Expect = 2.6
Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 26/72 (36%)
Query: 57 AAGCCGCWPAVHSGHTGLCHRMQAVAG-------------------GGTAGRQGLCA--W 95
A GCC PA TG+ + VA GG G CA W
Sbjct: 243 AGGCCHALPA-----TGILAFPKLVASVSESGLQAQHGVKIHCRLSGGLPGHSHCCAHLW 297
Query: 96 KPAGLLQEEGCR 107
PAGL+ E G R
Sbjct: 298 GPAGLVPEPGSR 309
>gi|38488767 microtubule associated serine/threonine kinase family
member 4 isoform b [Homo sapiens]
Length = 250
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 84 GGTAGRQGLCAWKPAGLLQEEG 105
GGT G + AW PA +L E G
Sbjct: 70 GGTLGARAPAAWAPASVLLERG 91
>gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens]
Length = 211
Score = 26.6 bits (57), Expect = 4.5
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 15 ILGHPKAEDIAGQQEIHGASRKTSKRWW 42
+ G I+GQ+E+HG ++ + +W
Sbjct: 161 VTGEQYGRPISGQKEVHGMAQPSQNNYW 188
>gi|38569423 ATP citrate lyase isoform 2 [Homo sapiens]
Length = 1091
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 9 STLQDFILGH---PKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGCCGCWP 65
ST D +L + P + I EI G R GR T+ VC C
Sbjct: 685 STFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSS 744
Query: 66 AVHSGHTGLC 75
V GH G C
Sbjct: 745 EVQFGHAGAC 754
>gi|38569421 ATP citrate lyase isoform 1 [Homo sapiens]
Length = 1101
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 9 STLQDFILGH---PKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGCCGCWP 65
ST D +L + P + I EI G R GR T+ VC C
Sbjct: 695 STFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSS 754
Query: 66 AVHSGHTGLC 75
V GH G C
Sbjct: 755 EVQFGHAGAC 764
>gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 70 GHTG-LCHRMQAVA-------GGGTA-GRQGLCAWKPAGLL 101
G TG LC R A A G GT G G CAW P G L
Sbjct: 27 GATGSLCQRGAASANHCSGSEGAGTGQGLSGFCAWLPTGSL 67
>gi|89058383 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 70 GHTG-LCHRMQAVA-------GGGTA-GRQGLCAWKPAGLL 101
G TG LC R A A G GT G G CAW P G L
Sbjct: 27 GATGSLCQRGAASANHCSGSEGAGTGQGLSGFCAWLPTGSL 67
>gi|89058207 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 70 GHTG-LCHRMQAVA-------GGGTA-GRQGLCAWKPAGLL 101
G TG LC R A A G GT G G CAW P G L
Sbjct: 27 GATGSLCQRGAASANHCSGSEGAGTGQGLSGFCAWLPTGSL 67
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 57 AAGCCGCWPAV------HSGHTGLCHRMQAVAGGGTAGRQG 91
AAGC GC P + +G G R GG GR G
Sbjct: 246 AAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAG 286
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 48 TQTAVCNCAAAGCCGCWPAVHSG-HTGLCHRM------QAVAGGGTAGRQGLCAWKPAGL 100
T+ AVC C+ C V G H C Q V GGT + LC P G
Sbjct: 114 TENAVCGCSPGHFC----IVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGT 169
Query: 101 LQEEG 105
G
Sbjct: 170 FSPNG 174
>gi|150456444 hypothetical protein LOC57578 [Homo sapiens]
Length = 2458
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 47 HTQTAVCNCAAAGCCG 62
H + AV C +AGCCG
Sbjct: 202 HVRRAVVTCFSAGCCG 217
>gi|30387642 late cornified envelope 4A [Homo sapiens]
Length = 99
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 53 CNCAAAGCCGCWPAVHSGHTGLCHRMQA-----VAGGGTAGRQGLCA 94
C C ++ GC + H H CHR ++ G +G G C+
Sbjct: 48 CGCCSSEGGGCCLSHHRHHRSHCHRPKSSNCYGSGSGQQSGGSGCCS 94
>gi|46255049 HMT1 hnRNP methyltransferase-like 1 [Homo sapiens]
Length = 433
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 35 RKTSKRWWSRGRHTQTAVCNCAAAGCCGCWPAVHSG 70
R+T+ WW R AGCCG PA H G
Sbjct: 61 RQTTADWWWGER-----------AGCCGYIPANHVG 85
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,423,017
Number of Sequences: 37866
Number of extensions: 229571
Number of successful extensions: 681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 46
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.