Guide to the Human Genome
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Search of human proteins with 239744784

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744784 PREDICTED: hypothetical protein XP_002343271 [Homo
sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755963 PREDICTED: similar to hCG2019585 [Homo sapiens]          259   2e-70
gi|239750485 PREDICTED: hypothetical protein XP_002347420 [Homo ...   259   2e-70
gi|239744784 PREDICTED: hypothetical protein XP_002343271 [Homo ...   259   2e-70
gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo...    36   0.007
gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo...    36   0.007
gi|45238854 basic leucine zipper transcription factor, ATF-like ...    33   0.048
gi|30425462 hypothetical protein LOC284185 [Homo sapiens]              32   0.11 
gi|22547204 hairless protein isoform a [Homo sapiens]                  28   1.6  
gi|22547207 hairless protein isoform b [Homo sapiens]                  28   1.6  
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]              28   1.6  
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ...    28   2.0  
gi|239747859 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo ...    28   2.0  
gi|187761351 growth factor independent 1 [Homo sapiens]                27   2.6  
gi|187761349 growth factor independent 1 [Homo sapiens]                27   2.6  
gi|71037377 growth factor independent 1 [Homo sapiens]                 27   2.6  
gi|38194224 G protein-coupled receptor 25 [Homo sapiens]               27   2.6  
gi|112821688 G protein-regulated inducer of neurite outgrowth 2 ...    27   2.6  
gi|38488767 microtubule associated serine/threonine kinase famil...    27   3.5  
gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens]     27   4.5  
gi|38569423 ATP citrate lyase isoform 2 [Homo sapiens]                 27   4.5  
gi|38569421 ATP citrate lyase isoform 1 [Homo sapiens]                 27   4.5  
gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]            27   4.5  
gi|89058383 PREDICTED: hypothetical protein [Homo sapiens]             27   4.5  
gi|89058207 PREDICTED: hypothetical protein [Homo sapiens]             27   4.5  
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]            27   4.5  
gi|23200041 tumor necrosis factor receptor superfamily, member 1...    27   4.5  
gi|150456444 hypothetical protein LOC57578 [Homo sapiens]              27   4.5  
gi|30387642 late cornified envelope 4A [Homo sapiens]                  26   5.9  
gi|46255049 HMT1 hnRNP methyltransferase-like 1 [Homo sapiens]         26   5.9  

>gi|239755963 PREDICTED: similar to hCG2019585 [Homo sapiens]
          Length = 117

 Score =  259 bits (663), Expect = 2e-70
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60
           MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC
Sbjct: 1   MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60

Query: 61  CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117
           CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF
Sbjct: 61  CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117


>gi|239750485 PREDICTED: hypothetical protein XP_002347420 [Homo
           sapiens]
          Length = 117

 Score =  259 bits (663), Expect = 2e-70
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60
           MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC
Sbjct: 1   MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60

Query: 61  CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117
           CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF
Sbjct: 61  CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117


>gi|239744784 PREDICTED: hypothetical protein XP_002343271 [Homo
           sapiens]
          Length = 117

 Score =  259 bits (663), Expect = 2e-70
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60
           MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC
Sbjct: 1   MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGC 60

Query: 61  CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117
           CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF
Sbjct: 61  CGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEEGCRMLQLRPDSGF 117


>gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo
           sapiens]
          Length = 747

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 2   PLPPCVVSTLQDFILGHPKAEDIAGQQEIHG 32
           P  P ++S LQD++ GHP+A   AGQQE  G
Sbjct: 182 PHLPALLSALQDYLSGHPEAGHSAGQQETGG 212


>gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo
           sapiens]
          Length = 901

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 2   PLPPCVVSTLQDFILGHPKAEDIAGQQEIHG 32
           P  P ++S LQD++ GHP+A   AGQQE  G
Sbjct: 336 PHLPALLSALQDYLSGHPEAGHSAGQQETGG 366


>gi|45238854 basic leucine zipper transcription factor, ATF-like 2
           [Homo sapiens]
          Length = 274

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 22  EDIAGQQEIHGASRKTSKRWWSRGRHTQTAVC-----NCAAAGCCGCW 64
           +++A ++EI   S +    WWSR  H    +C     +C+A G  GCW
Sbjct: 55  DNLALRKEIQ--SLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCW 100


>gi|30425462 hypothetical protein LOC284185 [Homo sapiens]
          Length = 264

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 13/107 (12%)

Query: 1   MPLPPCVVSTLQDFILGHPKAEDIAGQQEIHGASRKTSKRWW------SRGRHTQTAVCN 54
           +P PP V  T   +   HP     A  +++H AS      W         G   Q AV  
Sbjct: 14  LPRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAVPQ 73

Query: 55  CAAAGCCGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLL 101
                    WPA  S    +  R+  +  G T G      W P G L
Sbjct: 74  RPTRPSKALWPAQMSAAPAI--RLGQMVPGDTRG-----LWGPQGTL 113


>gi|22547204 hairless protein isoform a [Homo sapiens]
          Length = 1189

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 59  GCCGCWPAVHSGHTGLCHRMQAVAGGGTAG 88
           GCC  +P    G  G C + Q    GG +G
Sbjct: 325 GCCSSYPPTKGGGLGPCGKCQEGLEGGASG 354


>gi|22547207 hairless protein isoform b [Homo sapiens]
          Length = 1134

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 59  GCCGCWPAVHSGHTGLCHRMQAVAGGGTAG 88
           GCC  +P    G  G C + Q    GG +G
Sbjct: 325 GCCSSYPPTKGGGLGPCGKCQEGLEGGASG 354


>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
          Length = 1729

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 45   GRHTQTAVCNCAAAGCCGCWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCAWKPAGLLQEE 104
            G  T  A+   A+ G C   P   SG  GL   M A +      R+   A    GLL+EE
Sbjct: 1427 GMETGEALSFGASPGRCPARPPP-SGSQGLLEEMLAASSSKAVARRESAASGLGGLLEEE 1485

Query: 105  G 105
            G
Sbjct: 1486 G 1486


>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
           [Homo sapiens]
          Length = 912

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 42  WSRGRHTQTAVCNCAAAGCCGCWPAVHSGHTGLCHRMQAV----AGGGTAGRQGLCAWKP 97
           WS+G   + A    +A+  C  W  V  G      R+Q      AGGG   R G  A + 
Sbjct: 787 WSQGEAGKGASLPSSASWRCALWHRVWQGRRRARRRLQQQTKEGAGGGAGTRAGWLATEA 846

Query: 98  AGLLQEEGCRMLQLRPDS 115
               + +G    + RP++
Sbjct: 847 QVTQELKGLSGGEERPET 864


>gi|239747859 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 595

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 24  IAGQQEIHGASRKTSKRW------WSRGRHTQTAVCNCAAAGCCGCWPAVHSGHTGLCHR 77
           + GQ ++ GAS  TS+R       W + +  Q A C C+ +   G  P  ++        
Sbjct: 461 LVGQTDVDGAS--TSERLPNLGHPWPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPA 518

Query: 78  MQAVAGGGTAGRQGLCAWKP 97
           + A A   T G     AW P
Sbjct: 519 VVAAAAAATGGD----AWCP 534


>gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo
           sapiens]
          Length = 404

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 24  IAGQQEIHGASRKTSKRW------WSRGRHTQTAVCNCAAAGCCGCWPAVHSGHTGLCHR 77
           + GQ ++ GAS  TS+R       W + +  Q A C C+ +   G  P  ++        
Sbjct: 270 LVGQTDVDGAS--TSERLPNLGHPWPQPQAIQGAACTCSTSHSRGRAPVCNARRRRAAPA 327

Query: 78  MQAVAGGGTAGRQGLCAWKP 97
           + A A   T G     AW P
Sbjct: 328 VVAAAAAATGGD----AWCP 343


>gi|187761351 growth factor independent 1 [Homo sapiens]
          Length = 422

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 63  CWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCA 94
           C PA   GH    +  +  AGG  AG  G C+
Sbjct: 155 CEPAPEPGHPAALYGPKRAAGGAGAGAPGSCS 186


>gi|187761349 growth factor independent 1 [Homo sapiens]
          Length = 422

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 63  CWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCA 94
           C PA   GH    +  +  AGG  AG  G C+
Sbjct: 155 CEPAPEPGHPAALYGPKRAAGGAGAGAPGSCS 186


>gi|71037377 growth factor independent 1 [Homo sapiens]
          Length = 422

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 63  CWPAVHSGHTGLCHRMQAVAGGGTAGRQGLCA 94
           C PA   GH    +  +  AGG  AG  G C+
Sbjct: 155 CEPAPEPGHPAALYGPKRAAGGAGAGAPGSCS 186


>gi|38194224 G protein-coupled receptor 25 [Homo sapiens]
          Length = 361

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 55  CAAAGCCGCWP-AVHSGHTGLCHR-MQAVAGGGTAGRQGLCAWKPAGLLQ 102
           CA A CCG W  A+ +G   L +R +Q + G    G+   C  +P+   Q
Sbjct: 155 CALASCCGVWAVALLAGLPSLVYRGLQPLPG----GQDSQCGEEPSHAFQ 200


>gi|112821688 G protein-regulated inducer of neurite outgrowth 2
           [Homo sapiens]
          Length = 458

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 26/72 (36%)

Query: 57  AAGCCGCWPAVHSGHTGLCHRMQAVAG-------------------GGTAGRQGLCA--W 95
           A GCC   PA     TG+    + VA                    GG  G    CA  W
Sbjct: 243 AGGCCHALPA-----TGILAFPKLVASVSESGLQAQHGVKIHCRLSGGLPGHSHCCAHLW 297

Query: 96  KPAGLLQEEGCR 107
            PAGL+ E G R
Sbjct: 298 GPAGLVPEPGSR 309


>gi|38488767 microtubule associated serine/threonine kinase family
           member 4 isoform b [Homo sapiens]
          Length = 250

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 84  GGTAGRQGLCAWKPAGLLQEEG 105
           GGT G +   AW PA +L E G
Sbjct: 70  GGTLGARAPAAWAPASVLLERG 91


>gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens]
          Length = 211

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 15  ILGHPKAEDIAGQQEIHGASRKTSKRWW 42
           + G      I+GQ+E+HG ++ +   +W
Sbjct: 161 VTGEQYGRPISGQKEVHGMAQPSQNNYW 188


>gi|38569423 ATP citrate lyase isoform 2 [Homo sapiens]
          Length = 1091

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 9   STLQDFILGH---PKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGCCGCWP 65
           ST  D +L +   P  + I    EI G       R    GR T+  VC C          
Sbjct: 685 STFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSS 744

Query: 66  AVHSGHTGLC 75
            V  GH G C
Sbjct: 745 EVQFGHAGAC 754


>gi|38569421 ATP citrate lyase isoform 1 [Homo sapiens]
          Length = 1101

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 9   STLQDFILGH---PKAEDIAGQQEIHGASRKTSKRWWSRGRHTQTAVCNCAAAGCCGCWP 65
           ST  D +L +   P  + I    EI G       R    GR T+  VC C          
Sbjct: 695 STFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSS 754

Query: 66  AVHSGHTGLC 75
            V  GH G C
Sbjct: 755 EVQFGHAGAC 764


>gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 9/41 (21%)

Query: 70  GHTG-LCHRMQAVA-------GGGTA-GRQGLCAWKPAGLL 101
           G TG LC R  A A       G GT  G  G CAW P G L
Sbjct: 27  GATGSLCQRGAASANHCSGSEGAGTGQGLSGFCAWLPTGSL 67


>gi|89058383 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 9/41 (21%)

Query: 70  GHTG-LCHRMQAVA-------GGGTA-GRQGLCAWKPAGLL 101
           G TG LC R  A A       G GT  G  G CAW P G L
Sbjct: 27  GATGSLCQRGAASANHCSGSEGAGTGQGLSGFCAWLPTGSL 67


>gi|89058207 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 9/41 (21%)

Query: 70  GHTG-LCHRMQAVA-------GGGTA-GRQGLCAWKPAGLL 101
           G TG LC R  A A       G GT  G  G CAW P G L
Sbjct: 27  GATGSLCQRGAASANHCSGSEGAGTGQGLSGFCAWLPTGSL 67


>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 336

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 57  AAGCCGCWPAV------HSGHTGLCHRMQAVAGGGTAGRQG 91
           AAGC GC P +       +G  G   R      GG  GR G
Sbjct: 246 AAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAG 286


>gi|23200041 tumor necrosis factor receptor superfamily, member 14
           precursor [Homo sapiens]
          Length = 283

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 11/65 (16%)

Query: 48  TQTAVCNCAAAGCCGCWPAVHSG-HTGLCHRM------QAVAGGGTAGRQGLCAWKPAGL 100
           T+ AVC C+    C     V  G H   C         Q V  GGT  +  LC   P G 
Sbjct: 114 TENAVCGCSPGHFC----IVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGT 169

Query: 101 LQEEG 105
               G
Sbjct: 170 FSPNG 174


>gi|150456444 hypothetical protein LOC57578 [Homo sapiens]
          Length = 2458

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 47  HTQTAVCNCAAAGCCG 62
           H + AV  C +AGCCG
Sbjct: 202 HVRRAVVTCFSAGCCG 217


>gi|30387642 late cornified envelope 4A [Homo sapiens]
          Length = 99

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 53 CNCAAAGCCGCWPAVHSGHTGLCHRMQA-----VAGGGTAGRQGLCA 94
          C C ++   GC  + H  H   CHR ++        G  +G  G C+
Sbjct: 48 CGCCSSEGGGCCLSHHRHHRSHCHRPKSSNCYGSGSGQQSGGSGCCS 94


>gi|46255049 HMT1 hnRNP methyltransferase-like 1 [Homo sapiens]
          Length = 433

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 11/36 (30%)

Query: 35 RKTSKRWWSRGRHTQTAVCNCAAAGCCGCWPAVHSG 70
          R+T+  WW   R           AGCCG  PA H G
Sbjct: 61 RQTTADWWWGER-----------AGCCGYIPANHVG 85


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,423,017
Number of Sequences: 37866
Number of extensions: 229571
Number of successful extensions: 681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 46
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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