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Search of human proteins with 239744625
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744625 PREDICTED: hypothetical protein XP_002343208 [Homo
sapiens]
(333 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744625 PREDICTED: hypothetical protein XP_002343208 [Homo ... 669 0.0
gi|239750319 PREDICTED: hypothetical protein [Homo sapiens] 85 1e-16
gi|239744623 PREDICTED: hypothetical protein [Homo sapiens] 85 1e-16
gi|239755822 PREDICTED: hypothetical protein [Homo sapiens] 84 2e-16
gi|221316632 coatomer protein complex, subunit beta 1 [Homo sapi... 33 0.27
gi|221316630 coatomer protein complex, subunit beta 1 [Homo sapi... 33 0.27
gi|7705369 coatomer protein complex, subunit beta 1 [Homo sapiens] 33 0.27
gi|153070260 myristoylated alanine-rich protein kinase C substra... 32 1.0
gi|169162301 PREDICTED: hypothetical protein [Homo sapiens] 30 3.9
gi|169161809 PREDICTED: hypothetical protein [Homo sapiens] 30 3.9
gi|169162579 PREDICTED: hypothetical protein [Homo sapiens] 30 3.9
gi|239753791 PREDICTED: hypothetical protein [Homo sapiens] 29 5.1
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 29 5.1
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 29 5.1
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 29 5.1
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 29 5.1
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 29 5.1
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 29 5.1
gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo sapi... 29 5.1
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 29 6.7
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 29 6.7
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ... 29 6.7
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 29 6.7
gi|45505137 podocan [Homo sapiens] 29 6.7
gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo ... 28 8.7
gi|148596922 solute carrier family 29 (nucleoside transporters),... 28 8.7
gi|71040111 fibromodulin precursor [Homo sapiens] 28 8.7
gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens] 28 8.7
>gi|239744625 PREDICTED: hypothetical protein XP_002343208 [Homo
sapiens]
Length = 333
Score = 669 bits (1726), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MALDWEGTYVTPIILEMTLLVIFFSVHGSAGATADHSCRKDTKDTVIPMLPAPQGSGKTR 60
MALDWEGTYVTPIILEMTLLVIFFSVHGSAGATADHSCRKDTKDTVIPMLPAPQGSGKTR
Sbjct: 1 MALDWEGTYVTPIILEMTLLVIFFSVHGSAGATADHSCRKDTKDTVIPMLPAPQGSGKTR 60
Query: 61 VNEQLQQAWKPGRGINKLMALDLSGPHVHTLPNPSPVLLALQQFAGSLQLYALAVGIFKG 120
VNEQLQQAWKPGRGINKLMALDLSGPHVHTLPNPSPVLLALQQFAGSLQLYALAVGIFKG
Sbjct: 61 VNEQLQQAWKPGRGINKLMALDLSGPHVHTLPNPSPVLLALQQFAGSLQLYALAVGIFKG 120
Query: 121 ILTSLLCISHGYLKSLALLTKALDRWSAVPCLQGLYTCPLPWSSFPWVVTMLVNRDLELL 180
ILTSLLCISHGYLKSLALLTKALDRWSAVPCLQGLYTCPLPWSSFPWVVTMLVNRDLELL
Sbjct: 121 ILTSLLCISHGYLKSLALLTKALDRWSAVPCLQGLYTCPLPWSSFPWVVTMLVNRDLELL 180
Query: 181 DLRLKKTQRTRSRLRLLSMERTTDVSLTWVSKRGSRFLLEVVVVCCWSRFHLVSRTLFCC 240
DLRLKKTQRTRSRLRLLSMERTTDVSLTWVSKRGSRFLLEVVVVCCWSRFHLVSRTLFCC
Sbjct: 181 DLRLKKTQRTRSRLRLLSMERTTDVSLTWVSKRGSRFLLEVVVVCCWSRFHLVSRTLFCC 240
Query: 241 SKNCTSHLVDEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLLNSPSGADG 300
SKNCTSHLVDEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLLNSPSGADG
Sbjct: 241 SKNCTSHLVDEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLLNSPSGADG 300
Query: 301 EARATLTTEGAPKSTTKATSAKASSTPKAGTLS 333
EARATLTTEGAPKSTTKATSAKASSTPKAGTLS
Sbjct: 301 EARATLTTEGAPKSTTKATSAKASSTPKAGTLS 333
>gi|239750319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 84.7 bits (208), Expect = 1e-16
Identities = 86/262 (32%), Positives = 118/262 (45%), Gaps = 54/262 (20%)
Query: 94 PSPVLLALQQFAGSLQLYALAVGIFKGILTSLLCISHGYLK------------SLALLTK 141
P VLL L Q G LQL L GI +G L +LL I +G L+ L L +
Sbjct: 132 PGHVLLGLLQ--GLLQLGQLVPGILEGQLPTLLGIRNGVLQIGALQIERRRHHKLILSSG 189
Query: 142 ALDRWSAVP-------CLQG--LYTCPLPWSSF---PWVVTMLVNRDLELLDLRLKKTQR 189
L + +P CL P P + P VV +L+ + L++L L
Sbjct: 190 TLVDFILIPGGERDGKCLSEDEQQAAPFPHDAVQLPPEVVDVLLEQRLQVLPHSLGALLL 249
Query: 190 TRSRLRLLSMERTTDVSLTWVSKRGSRFLLEVVVVCCWSRFHLVSRTLFCCSKNCTSHLV 249
+ L + ++ S+ S FL ++V +HLV
Sbjct: 250 QQGPLGVQNLVLLLQEPHLEGSRTHSDFLQKIV-----------------------AHLV 286
Query: 250 DEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLLNSPSGADGEARATLTTE 309
DEGGKL+VE LDL AL P LD V+L VEG ++ LVD DLL++ AD +ARAT T
Sbjct: 287 DEGGKLIVEGLDLLALLGPHPLDAGVDLQVEGSQETLVDSDLLDTSRRADRKARATEATS 346
Query: 310 GA-----PKSTTKATSAKASST 326
A PK+TT +T+ S+T
Sbjct: 347 KASSATEPKATTSSTAETKSTT 368
>gi|239744623 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 84.7 bits (208), Expect = 1e-16
Identities = 86/262 (32%), Positives = 118/262 (45%), Gaps = 54/262 (20%)
Query: 94 PSPVLLALQQFAGSLQLYALAVGIFKGILTSLLCISHGYLK------------SLALLTK 141
P VLL L Q G LQL L GI +G L +LL I +G L+ L L +
Sbjct: 132 PGHVLLGLLQ--GLLQLGQLVPGILEGQLPTLLGIRNGVLQIGALQIERRRHHKLILSSG 189
Query: 142 ALDRWSAVP-------CLQG--LYTCPLPWSSF---PWVVTMLVNRDLELLDLRLKKTQR 189
L + +P CL P P + P VV +L+ + L++L L
Sbjct: 190 TLVDFILIPGGERDGKCLSEDEQQAAPFPHDAVQLPPEVVDVLLEQRLQVLPHSLGALLL 249
Query: 190 TRSRLRLLSMERTTDVSLTWVSKRGSRFLLEVVVVCCWSRFHLVSRTLFCCSKNCTSHLV 249
+ L + ++ S+ S FL ++V +HLV
Sbjct: 250 QQGPLGVQNLVLLLQEPHLEGSRTHSDFLQKIV-----------------------AHLV 286
Query: 250 DEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLLNSPSGADGEARATLTTE 309
DEGGKL+VE LDL AL P LD V+L VEG ++ LVD DLL++ AD +ARAT T
Sbjct: 287 DEGGKLIVEGLDLLALLGPHPLDAGVDLQVEGSQETLVDSDLLDTSRRADRKARATEATS 346
Query: 310 GA-----PKSTTKATSAKASST 326
A PK+TT +T+ S+T
Sbjct: 347 KASSATEPKATTSSTAETKSTT 368
>gi|239755822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 83.6 bits (205), Expect = 2e-16
Identities = 86/262 (32%), Positives = 118/262 (45%), Gaps = 54/262 (20%)
Query: 94 PSPVLLALQQFAGSLQLYALAVGIFKGILTSLLCISHGYLK------------SLALLTK 141
P VLL L Q G LQL L GI +G L +LL I +G L+ L L +
Sbjct: 132 PGHVLLGLLQ--GLLQLGQLVPGILEGQLPTLLGIRNGVLQIGALQIERRRHHKLILSSG 189
Query: 142 ALDRWSAVP-------CLQG--LYTCPLPWSSF---PWVVTMLVNRDLELLDLRLKKTQR 189
L + +P CL P P + P VV +L+ + L++L L
Sbjct: 190 TLVDFILIPGGERDGKCLSEDEQQAAPFPHDAVQLPPEVVDVLLEQRLQVLPHSLGALLL 249
Query: 190 TRSRLRLLSMERTTDVSLTWVSKRGSRFLLEVVVVCCWSRFHLVSRTLFCCSKNCTSHLV 249
+ L + ++ S+ S FL ++V +HLV
Sbjct: 250 QQGPLGVQNLVLLLQEPHLEGSRTHSDFLQKIV-----------------------AHLV 286
Query: 250 DEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLLNSPSGADGEARATLTTE 309
DEGGKL+VE LDL AL P LD V+L VEG ++ LVD DLL++ AD +ARAT T
Sbjct: 287 DEGGKLIVEGLDLLALLGPHPLDAGVDLQVEGSQETLVDSDLLDTFRRADRKARATEATS 346
Query: 310 GA-----PKSTTKATSAKASST 326
A PK+TT +T+ S+T
Sbjct: 347 KASSATEPKATTSSTAETKSTT 368
>gi|221316632 coatomer protein complex, subunit beta 1 [Homo
sapiens]
Length = 953
Score = 33.5 bits (75), Expect = 0.27
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 242 KNCTSHLVDEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLLNSPSGADGE 301
+NCT L G +VE+ L DF +++ N+ V E ++ G+++ SGA +
Sbjct: 754 QNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASD 813
Query: 302 ARATLTTE 309
+ ++
Sbjct: 814 RNCVVLSD 821
>gi|221316630 coatomer protein complex, subunit beta 1 [Homo
sapiens]
Length = 953
Score = 33.5 bits (75), Expect = 0.27
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 242 KNCTSHLVDEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLLNSPSGADGE 301
+NCT L G +VE+ L DF +++ N+ V E ++ G+++ SGA +
Sbjct: 754 QNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASD 813
Query: 302 ARATLTTE 309
+ ++
Sbjct: 814 RNCVVLSD 821
>gi|7705369 coatomer protein complex, subunit beta 1 [Homo sapiens]
Length = 953
Score = 33.5 bits (75), Expect = 0.27
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 242 KNCTSHLVDEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLLNSPSGADGE 301
+NCT L G +VE+ L DF +++ N+ V E ++ G+++ SGA +
Sbjct: 754 QNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASD 813
Query: 302 ARATLTTE 309
+ ++
Sbjct: 814 RNCVVLSD 821
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 31.6 bits (70), Expect = 1.0
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 294 SPSGADGEARATLTTEGAPKSTTKATSAKASSTPK 328
SP+ A+GEA + ++ +PK+ AT + ++ TPK
Sbjct: 118 SPTAAEGEAASAASSTSSPKAEDGATPSPSNETPK 152
>gi|169162301 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 29.6 bits (65), Expect = 3.9
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 16/120 (13%)
Query: 50 LPAPQGSGKTRVNEQLQQAWKPGRGINKLMALDLSGPHVHTLPNPSPVLLALQQFAGSLQ 109
+P P + K R+ + P + + A LS P VHTLPN +P L L A
Sbjct: 1 MPIPIANQKNRLVKVPNFVSPPRGQLARKSACFLSHPLVHTLPNTTPYLTFLLTSAAD-- 58
Query: 110 LYALAVGIFKGIL--TSLLCISHGYLKSLALLTKALDRWSAVPCLQGLYTCPLPWSSFPW 167
+ L + + T C H SL WS P L+ +C + SF W
Sbjct: 59 -HTLVMDKLLSTVPPTQPPCPGHEVFASLI--------WSIWPLLE---SCQMRDISFTW 106
>gi|169161809 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 29.6 bits (65), Expect = 3.9
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 16/120 (13%)
Query: 50 LPAPQGSGKTRVNEQLQQAWKPGRGINKLMALDLSGPHVHTLPNPSPVLLALQQFAGSLQ 109
+P P + K R+ + P + + A LS P VHTLPN +P L L A
Sbjct: 1 MPIPIANQKNRLVKVPNFVSPPRGQLARKSACFLSHPLVHTLPNTTPYLTFLLTSAAD-- 58
Query: 110 LYALAVGIFKGIL--TSLLCISHGYLKSLALLTKALDRWSAVPCLQGLYTCPLPWSSFPW 167
+ L + + T C H SL WS P L+ +C + SF W
Sbjct: 59 -HTLVMDKLLSTVPPTQPPCPGHEVFASLI--------WSIWPLLE---SCQMRDISFTW 106
>gi|169162579 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 29.6 bits (65), Expect = 3.9
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 16/120 (13%)
Query: 50 LPAPQGSGKTRVNEQLQQAWKPGRGINKLMALDLSGPHVHTLPNPSPVLLALQQFAGSLQ 109
+P P + K R+ + P + + A LS P VHTLPN +P L L A
Sbjct: 1 MPIPIANQKNRLVKVPNFVSPPRGQLARKSACFLSHPLVHTLPNTTPYLTFLLTSAAD-- 58
Query: 110 LYALAVGIFKGIL--TSLLCISHGYLKSLALLTKALDRWSAVPCLQGLYTCPLPWSSFPW 167
+ L + + T C H SL WS P L+ +C + SF W
Sbjct: 59 -HTLVMDKLLSTVPPTQPPCPGHEVFASLI--------WSIWPLLE---SCQMRDISFTW 106
>gi|239753791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/44 (38%), Positives = 19/44 (43%)
Query: 287 VDGDLLNSPSGADGEARATLTTEGAPKSTTKATSAKASSTPKAG 330
+DGDL PS A + T EGA S T A S S G
Sbjct: 159 LDGDLPGDPSLPGSAAAPSSTAEGAASSATGAGSGAGSGLASVG 202
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 279 VEGGEQALVDGDLLNSPSGADGEARATLTTEGAPKSTTKATSAKASSTPKAGTL 332
V GG Q + + S ++ E T G KS K KA+S P G+L
Sbjct: 605 VAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSL 658
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 279 VEGGEQALVDGDLLNSPSGADGEARATLTTEGAPKSTTKATSAKASSTPKAGTL 332
V GG Q + + S ++ E T G KS K KA+S P G+L
Sbjct: 682 VAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSL 735
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 279 VEGGEQALVDGDLLNSPSGADGEARATLTTEGAPKSTTKATSAKASSTPKAGTL 332
V GG Q + + S ++ E T G KS K KA+S P G+L
Sbjct: 682 VAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSL 735
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 279 VEGGEQALVDGDLLNSPSGADGEARATLTTEGAPKSTTKATSAKASSTPKAGTL 332
V GG Q + + S ++ E T G KS K KA+S P G+L
Sbjct: 605 VAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSL 658
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 279 VEGGEQALVDGDLLNSPSGADGEARATLTTEGAPKSTTKATSAKASSTPKAGTL 332
V GG Q + + S ++ E T G KS K KA+S P G+L
Sbjct: 682 VAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSL 735
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 279 VEGGEQALVDGDLLNSPSGADGEARATLTTEGAPKSTTKATSAKASSTPKAGTL 332
V GG Q + + S ++ E T G KS K KA+S P G+L
Sbjct: 682 VAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSL 735
>gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo sapiens]
Length = 1188
Score = 29.3 bits (64), Expect = 5.1
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 46 VIPMLPAPQGSGKTRVNEQLQQAWKPGRGINKLMALDLSGPHVHTLPNPSPVLLALQQFA 105
V P+ P+ + SGK + +EQ + K G G H LP SP+ L ++
Sbjct: 1031 VSPLDPSKEVSGKEKASEQESEGSKAAHG-----GHSGGGSEGHKLPLSSPIFPGL--YS 1083
Query: 106 GSLQLYALAVGIFKGILTSLLCISHGYLKSLALLTKALD--RWSAVPCLQGLYTCP 159
GSL L + G SL YLK+ +L+ + + ++ +G++T P
Sbjct: 1084 GSLCNSGLNSRLPAGYSHSL-----QYLKNQTVLSPLMQPLAFHSLVMQRGIFTSP 1134
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 6.7
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 27 HGSAGATADHSCRKDTKDTVIPMLPAPQGSGKTRVNEQLQQAWK-PGRGINKLMALDLSG 85
HG AG A + R L AP+G+ E AW+ PG A D S
Sbjct: 100 HGEAGTPAPRAAR----------LGAPRGASPPPGEEGRAGAWRSPGEA----GAADGS- 144
Query: 86 PHVHTLPNPSP 96
PHV T P P+P
Sbjct: 145 PHVSTSPTPAP 155
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 6.7
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 27 HGSAGATADHSCRKDTKDTVIPMLPAPQGSGKTRVNEQLQQAWK-PGRGINKLMALDLSG 85
HG AG A + R L AP+G+ E AW+ PG A D S
Sbjct: 100 HGEAGTPAPRAAR----------LGAPRGASPPPGEEGRAGAWRSPGEA----GAADGS- 144
Query: 86 PHVHTLPNPSP 96
PHV T P P+P
Sbjct: 145 PHVSTSPTPAP 155
>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 6.7
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 27 HGSAGATADHSCRKDTKDTVIPMLPAPQGSGKTRVNEQLQQAWK-PGRGINKLMALDLSG 85
HG AG A + R L AP+G+ E AW+ PG A D S
Sbjct: 100 HGEAGTPAPRAAR----------LGAPRGASPPPGEEGRAGAWRSPGEA----GAADGS- 144
Query: 86 PHVHTLPNPSP 96
PHV T P P+P
Sbjct: 145 PHVSTSPTPAP 155
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 28.9 bits (63), Expect = 6.7
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 268 PDFLDLRVNLHVEGGEQALVDGDLLNSP--SGADGEARATLTTEGAPKSTTKAT 319
P+ +L + E GE+A +DGDLL A+ E R++L P +T T
Sbjct: 101 PEAAELELEEDEEEGEEAELDGDLLEEEELEEAEEEDRSSLLLLSPPAATASQT 154
>gi|45505137 podocan [Homo sapiens]
Length = 661
Score = 28.9 bits (63), Expect = 6.7
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 73 RGINKLMALDLSGPHVHTLPNPSPVLLALQQFAGSLQLYALAVGIFKGILTSLLCISHGY 132
R + L +LDLSG +HTLP P + + + + +L ALA +G L + + Y
Sbjct: 475 RKLRLLRSLDLSGNRLHTLPPGLPRNVHVLKVKRN-ELAALA----RGALVGMAQLRELY 529
Query: 133 LKSLALLTKAL 143
L S L ++AL
Sbjct: 530 LTSNRLRSRAL 540
>gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo
sapiens]
Length = 907
Score = 28.5 bits (62), Expect = 8.7
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 233 VSRTLFCCSKNCTSHLVDEGGKLVVEELDLFALFRPDFLDLRVNLHVEGGEQALVDGDLL 292
V+ L CS N EG ELDLFA+ P+ V + A
Sbjct: 467 VAAALDACSGN-DPFAPSEGSAEAAPELDLFAMKPPE---TSVPVVTPTASTAPPVPATA 522
Query: 293 NSPSGADGEARATLTTEGAPKSTTKATSAKASST 326
SP+ A A A T A +TT TSA ++T
Sbjct: 523 PSPAPAVAAAAAATTAATAAATTTTTTSAATATT 556
>gi|148596922 solute carrier family 29 (nucleoside transporters),
member 3 [Homo sapiens]
Length = 475
Score = 28.5 bits (62), Expect = 8.7
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 117 IFKGILTSLLCISHGYLKSLALL 139
++ +L+SLL +S+GYL +LALL
Sbjct: 413 VYPALLSSLLGLSNGYLSTLALL 435
>gi|71040111 fibromodulin precursor [Homo sapiens]
Length = 376
Score = 28.5 bits (62), Expect = 8.7
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 62 NEQLQQAWKPGRGINKLMALDLSGPHVHTLPNPSPVLLALQQFAGSLQLYALAVGIFKGI 121
+ ++Q+ RG+ L+ LDLS H+ +P+ P L Q + +Y + F+G
Sbjct: 209 HNEIQEVGSSMRGLRSLILLDLSYNHLRKVPDGLPSALE-QLYMEHNNVYTVPDSYFRGA 267
Query: 122 LTSL-LCISHGYLKSLALLTKALD 144
L + +SH L + L + +
Sbjct: 268 PKLLYVRLSHNSLTNNGLASNTFN 291
>gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens]
Length = 810
Score = 28.5 bits (62), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 291 LLNSPSGADGEARATLTTEGAPKSTTKATSAKASSTPKAGTLS 333
LL S GE + L TEG K+ + A++SST + T S
Sbjct: 365 LLERASQKRGELQTKLKTEGPSKTDDSTSGARSSSTIRIKTFS 407
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,700,247
Number of Sequences: 37866
Number of extensions: 573636
Number of successful extensions: 1701
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1674
Number of HSP's gapped (non-prelim): 31
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.