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Search of human proteins with 239744561
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744561 PREDICTED: hypothetical protein XP_002343188 [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744561 PREDICTED: hypothetical protein XP_002343188 [Homo ... 273 2e-74
gi|239755750 PREDICTED: hypothetical protein XP_002344682 [Homo ... 271 7e-74
gi|239755771 PREDICTED: hypothetical protein [Homo sapiens] 265 7e-72
gi|239755024 PREDICTED: hypothetical protein [Homo sapiens] 31 0.27
gi|239749542 PREDICTED: hypothetical protein [Homo sapiens] 31 0.27
gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo ... 31 0.27
gi|154426306 kinesin family member 24 [Homo sapiens] 31 0.27
gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens] 30 0.60
gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens] 30 0.60
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 28 1.3
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 28 1.3
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens] 28 1.3
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens] 28 1.3
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens] 28 1.3
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 28 1.3
gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens] 28 2.3
gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens] 28 2.3
gi|239756584 PREDICTED: hypothetical protein [Homo sapiens] 27 3.0
gi|239751076 PREDICTED: hypothetical protein [Homo sapiens] 27 3.0
gi|239745563 PREDICTED: hypothetical protein [Homo sapiens] 27 3.0
gi|102468717 mediator complex subunit 13 [Homo sapiens] 27 3.0
gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo sa... 27 3.0
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens] 27 3.0
gi|169173209 PREDICTED: hypothetical protein [Homo sapiens] 27 3.9
gi|169172420 PREDICTED: UPF0607 protein ENSP00000382826-like [Ho... 27 3.9
gi|169172709 PREDICTED: UPF0607 protein ENSP00000382826-like [Ho... 27 3.9
gi|23097236 homeobox A9 [Homo sapiens] 27 5.1
gi|40805106 fucosyltransferase 10 [Homo sapiens] 27 5.1
gi|23510437 tumor necrosis factor receptor superfamily, member 8... 26 6.7
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 26 6.7
>gi|239744561 PREDICTED: hypothetical protein XP_002343188 [Homo
sapiens]
Length = 123
Score = 273 bits (698), Expect = 2e-74
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MPQWMPQLPQPPVETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60
MPQWMPQLPQPPVETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG
Sbjct: 1 MPQWMPQLPQPPVETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60
Query: 61 ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120
ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD
Sbjct: 61 ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120
Query: 121 FSR 123
FSR
Sbjct: 121 FSR 123
>gi|239755750 PREDICTED: hypothetical protein XP_002344682 [Homo
sapiens]
Length = 123
Score = 271 bits (694), Expect = 7e-74
Identities = 122/123 (99%), Positives = 123/123 (100%)
Query: 1 MPQWMPQLPQPPVETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60
MPQWMPQLPQPPVETK+EAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG
Sbjct: 1 MPQWMPQLPQPPVETKQEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60
Query: 61 ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120
ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD
Sbjct: 61 ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120
Query: 121 FSR 123
FSR
Sbjct: 121 FSR 123
>gi|239755771 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 265 bits (677), Expect = 7e-72
Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 1 MPQWMPQLPQPPVETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTG 60
MPQWMPQLPQPP ET++EAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIP FSPTG
Sbjct: 42 MPQWMPQLPQPPAETRKEAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPPFSPTG 101
Query: 61 ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGGGVVAHQEEAD 120
ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPG GVVAHQEEAD
Sbjct: 102 ANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKHCLQRAGQRKGTAPGSGVVAHQEEAD 161
Query: 121 FSR 123
FSR
Sbjct: 162 FSR 164
>gi|239755024 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 30.8 bits (68), Expect = 0.27
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 24 MQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHLC 83
+Q +K + G++ P AR + PTG A AW+ + S P H
Sbjct: 31 LQPARKKMVSSGQVGRRLPIHARDSAAGARGLGEPTGGRASAWLQLQPPSLRSSPLMH-- 88
Query: 84 NRIPADHAHDKHCLQRAGQRKGTAPGG 110
PA A + G+R GT PGG
Sbjct: 89 ---PARRAAGRGSTVSRGRRAGT-PGG 111
>gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 30.8 bits (68), Expect = 0.27
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 24 MQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHLC 83
+Q +K + G++ P AR + PTG A AW+ + S P H
Sbjct: 31 LQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQLQPPSLRSSPLMH-- 88
Query: 84 NRIPADHAHDKHCLQRAGQRKGTAPGG 110
PA A + G+R GT PGG
Sbjct: 89 ---PARRAAGRGSTVSRGRRAGT-PGG 111
>gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo
sapiens]
Length = 136
Score = 30.8 bits (68), Expect = 0.27
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 24 MQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHLC 83
+Q +K + G++ P AR + PTG A AW+ + S P H
Sbjct: 31 LQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQLQPPSLRSSPLMH-- 88
Query: 84 NRIPADHAHDKHCLQRAGQRKGTAPGG 110
PA A + G+R GT PGG
Sbjct: 89 ---PARRAAGRGSTVSRGRRAGT-PGG 111
>gi|154426306 kinesin family member 24 [Homo sapiens]
Length = 1368
Score = 30.8 bits (68), Expect = 0.27
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 11 PPVETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANAC 64
P R WLS+ D+ PGG+LP +P R H + ++P+ AC
Sbjct: 1104 PVSSATRHLWLSS---SPPDNKPGGDLPALSPSPIRQHPADKLPSREADLGEAC 1154
>gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens]
Length = 574
Score = 29.6 bits (65), Expect = 0.60
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 38 PWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHL-C-----NRIPADHA 91
P + PR R+ P F P ACA +L +PH+P +H C +++P H
Sbjct: 233 PQDLPRPLRSR---EFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHD 289
Query: 92 HDKHCLQRAGQ 102
+ + Q+ Q
Sbjct: 290 YPRAAYQQVIQ 300
>gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens]
Length = 565
Score = 29.6 bits (65), Expect = 0.60
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 38 PWNAPRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHL-C-----NRIPADHA 91
P + PR R+ P F P ACA +L +PH+P +H C +++P H
Sbjct: 224 PQDLPRPLRSR---EFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHD 280
Query: 92 HDKHCLQRAGQ 102
+ + Q+ Q
Sbjct: 281 YPRAAYQQVIQ 291
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 28.5 bits (62), Expect = 1.3
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 17/57 (29%)
Query: 47 THCSFRIPAFSPTGANACAWVLAALWTPHSPPG-------FHLCNRIPADHAHDKHC 96
TH S RIP SP A A P +PP F C ++ H KHC
Sbjct: 490 THVSRRIPVLSPKPAVA----------PPAPPSSSQLCRYFPACKKMECPFYHPKHC 536
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 28.5 bits (62), Expect = 1.3
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 17/57 (29%)
Query: 47 THCSFRIPAFSPTGANACAWVLAALWTPHSPPG-------FHLCNRIPADHAHDKHC 96
TH S RIP SP A A P +PP F C ++ H KHC
Sbjct: 655 THVSRRIPVLSPKPAVA----------PPAPPSSSQLCRYFPACKKMECPFYHPKHC 701
>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 28.5 bits (62), Expect = 1.3
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 13 VETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHC-SFRIPAFSPTGANACAWVLAAL 71
V + AWLS+ ++ G +L P A HC R P +L AL
Sbjct: 261 VSAPKLAWLSSSLPSERLGSVGPQLRATCPLLAELHCLPGRTDPEPPAYLGQYESILDAL 320
Query: 72 WTPHSPPGFHLCNRIPADHAHDKHCLQRAGQR 103
+ H P HL + A A D + AG R
Sbjct: 321 FRLHGGPSSHLVPELRA--ALDLAAIDLAGPR 350
>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 28.5 bits (62), Expect = 1.3
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 13 VETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHC-SFRIPAFSPTGANACAWVLAAL 71
V + AWLS+ ++ G +L P A HC R P +L AL
Sbjct: 261 VSAPKLAWLSSSLPSERLGSVGPQLRATCPLLAELHCLPGRTDPEPPAYLGQYESILDAL 320
Query: 72 WTPHSPPGFHLCNRIPADHAHDKHCLQRAGQR 103
+ H P HL + A A D + AG R
Sbjct: 321 FRLHGGPSSHLVPELRA--ALDLAAIDLAGPR 350
>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 28.5 bits (62), Expect = 1.3
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 13 VETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHC-SFRIPAFSPTGANACAWVLAAL 71
V + AWLS+ ++ G +L P A HC R P +L AL
Sbjct: 261 VSAPKLAWLSSSLPSERLGSVGPQLRATCPLLAELHCLPGRTDPEPPAYLGQYESILDAL 320
Query: 72 WTPHSPPGFHLCNRIPADHAHDKHCLQRAGQR 103
+ H P HL + A A D + AG R
Sbjct: 321 FRLHGGPSSHLVPELRA--ALDLAAIDLAGPR 350
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 28.5 bits (62), Expect = 1.3
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 8 LPQPPVETKREAWLSAMQDGKKDSIPGGELPWNAPRTARTHCSFRIPAFSPTGANACAWV 67
LP PP + +L + G+ + G P AP PA SPT +
Sbjct: 345 LPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAP-----------PARSPTTELSSKSQ 393
Query: 68 LAALWTPHSPPGFHLCN 84
A WTP PG L N
Sbjct: 394 QATAWTPTQQPGGQLRN 410
>gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens]
Length = 1290
Score = 27.7 bits (60), Expect = 2.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 57 SPTGANACAWVLAALWTPHSPPGFH-LCNRIPADHAH 92
SP G+ A A +AL P +PP FH + R PA+ ++
Sbjct: 528 SPLGSTASAPAPSALPAPPAPPVFHGMLERAPAEPSY 564
>gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens]
Length = 1291
Score = 27.7 bits (60), Expect = 2.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 57 SPTGANACAWVLAALWTPHSPPGFH-LCNRIPADHAH 92
SP G+ A A +AL P +PP FH + R PA+ ++
Sbjct: 528 SPLGSTASAPAPSALPAPPAPPVFHGMLERAPAEPSY 564
>gi|239756584 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 10 QPPVETKREAWLSAMQDGKKDSIPGGELPWNAP 42
+PP+E + +AW GK+DS + WN P
Sbjct: 99 KPPIEVEDDAWGIKKMTGKEDS---KDFLWNGP 128
>gi|239751076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 10 QPPVETKREAWLSAMQDGKKDSIPGGELPWNAP 42
+PP+E + +AW GK+DS + WN P
Sbjct: 99 KPPIEVEDDAWGIKKMTGKEDS---KDFLWNGP 128
>gi|239745563 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 10 QPPVETKREAWLSAMQDGKKDSIPGGELPWNAP 42
+PP+E + +AW GK+DS + WN P
Sbjct: 99 KPPIEVEDDAWGIKKMTGKEDS---KDFLWNGP 128
>gi|102468717 mediator complex subunit 13 [Homo sapiens]
Length = 2174
Score = 27.3 bits (59), Expect = 3.0
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 3 QWMPQLPQPPVETKREAW----LSAMQDG------KKDSIPGGELPWNAPRTARTHCSFR 52
Q++P + P R++W L + G K+ + + T +TH SF
Sbjct: 926 QYLPPIKLPEECIYRQSWTVGKLELLSSGPSMPFIKEGDGSNMDQEYGTAYTPQTHTSFG 985
Query: 53 IPAFSPTGANACAWVLAALWTPHSP 77
+P S +N+ A +L + TP P
Sbjct: 986 MPPSSAPPSNSGAGILPSPSTPRFP 1010
>gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo
sapiens]
Length = 528
Score = 27.3 bits (59), Expect = 3.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 54 PAFSPTGANACAWVLAALWTPHSPPGFHLCNRIPA 88
P F TGA A ++W + PP LC R+ A
Sbjct: 467 PPFPRTGATRGAQEPCSVWYEYEPPCTSLCARVQA 501
>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 27.3 bits (59), Expect = 3.0
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 10 QPPVETKR-EAWLSAMQDGKKDSIP---GGELPWNAPRTARTHC-SFRIP--AFSPTGAN 62
QPP+ +R +AW +A DG + S P G APR + R+P +F+ TG +
Sbjct: 135 QPPITQERGDAWATAPADGSRGSRPLAKGSREEVKAPRAGGSAAEDLRLPSTSFALTGDS 194
Query: 63 A 63
A
Sbjct: 195 A 195
>gi|169173209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 64 CAWVLAALWTPHSPPGFHLCNRIPADHAH 92
C+W W H P +C PA AH
Sbjct: 9 CSWSHRRSWPRHRQPARLVCEAFPAGRAH 37
>gi|169172420 PREDICTED: UPF0607 protein ENSP00000382826-like
[Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 64 CAWVLAALWTPHSPPGFHLCNRIPADHAH 92
C+W W H P +C PA AH
Sbjct: 9 CSWSHRRSWPRHRQPARLVCEAFPAGRAH 37
>gi|169172709 PREDICTED: UPF0607 protein ENSP00000382826-like
[Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 64 CAWVLAALWTPHSPPGFHLCNRIPADHAH 92
C+W W H P +C PA AH
Sbjct: 9 CSWSHRRSWPRHRQPARLVCEAFPAGRAH 37
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 26.6 bits (57), Expect = 5.1
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 42 PRTARTHCSFRIPAFSPTGANACAWVLAALWTPHSPPGFHLCNRIPADHAHDKH 95
PR A T P FSP + A V A W P G N +PA H H
Sbjct: 39 PRQAATLAEH--PDFSPCSFQSKATVFGASWNPVHAAG---ANAVPAAVYHHHH 87
>gi|40805106 fucosyltransferase 10 [Homo sapiens]
Length = 479
Score = 26.6 bits (57), Expect = 5.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 8 LPQPPVETKREAWLSAMQDGKKDS 31
L PP+ + RE W+S+ + KK++
Sbjct: 431 LRTPPLSSLREMWISSFEQSKKEA 454
>gi|23510437 tumor necrosis factor receptor superfamily, member 8
isoform 2 [Homo sapiens]
Length = 132
Score = 26.2 bits (56), Expect = 6.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 2 PQWMPQLPQPPVETKREAWLSAMQDGKKDSIP 33
P + Q +PP+ + + LS ++GK+D +P
Sbjct: 95 PHYPEQETEPPLGSCSDVMLSVEEEGKEDPLP 126
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 26.2 bits (56), Expect = 6.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 2 PQWMPQLPQPPVETKREAWLSAMQDGKKDSIP 33
P + Q +PP+ + + LS ++GK+D +P
Sbjct: 558 PHYPEQETEPPLGSCSDVMLSVEEEGKEDPLP 589
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,715,513
Number of Sequences: 37866
Number of extensions: 338580
Number of successful extensions: 789
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 44
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.