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Search of human proteins with 239744500
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744500 PREDICTED: hypothetical protein XP_002343173 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750195 PREDICTED: hypothetical protein XP_002347307 [Homo ... 256 4e-69
gi|239744500 PREDICTED: hypothetical protein XP_002343173 [Homo ... 256 4e-69
gi|239755698 PREDICTED: hypothetical protein [Homo sapiens] 253 3e-68
gi|4507741 twist [Homo sapiens] 43 5e-05
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 41 2e-04
gi|109255251 loricrin [Homo sapiens] 39 7e-04
gi|170650643 solute carrier family 22, member 23 isoform a [Homo... 38 0.002
gi|156415990 Y box binding protein 2 [Homo sapiens] 38 0.002
gi|153792074 proline rich 12 [Homo sapiens] 38 0.002
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 37 0.003
gi|84570137 homeobox B3 [Homo sapiens] 37 0.003
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 37 0.003
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 37 0.003
gi|124430752 kinesin family member 26B [Homo sapiens] 37 0.003
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 37 0.004
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 37 0.004
gi|13994190 frizzled 8 [Homo sapiens] 37 0.004
gi|239755943 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|4504713 insulinoma-associated 1 [Homo sapiens] 36 0.006
gi|55956899 keratin 9 [Homo sapiens] 36 0.007
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 36 0.007
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 36 0.007
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 35 0.010
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 35 0.010
gi|28269693 xylosyltransferase I [Homo sapiens] 35 0.010
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 35 0.010
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 35 0.010
gi|195972866 keratin 10 [Homo sapiens] 35 0.013
gi|197333809 joined to JAZF1 [Homo sapiens] 35 0.017
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.017
>gi|239750195 PREDICTED: hypothetical protein XP_002347307 [Homo
sapiens]
Length = 117
Score = 256 bits (653), Expect = 4e-69
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MLPEHFFLPWMPRLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGT 60
MLPEHFFLPWMPRLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGT
Sbjct: 1 MLPEHFFLPWMPRLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGT 60
Query: 61 QSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPALRLQ 117
QSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPALRLQ
Sbjct: 61 QSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPALRLQ 117
>gi|239744500 PREDICTED: hypothetical protein XP_002343173 [Homo
sapiens]
Length = 117
Score = 256 bits (653), Expect = 4e-69
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MLPEHFFLPWMPRLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGT 60
MLPEHFFLPWMPRLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGT
Sbjct: 1 MLPEHFFLPWMPRLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGT 60
Query: 61 QSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPALRLQ 117
QSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPALRLQ
Sbjct: 61 QSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPALRLQ 117
>gi|239755698 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 253 bits (645), Expect = 3e-68
Identities = 116/117 (99%), Positives = 116/117 (99%)
Query: 1 MLPEHFFLPWMPRLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGT 60
ML EHFFLPWMPRLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGT
Sbjct: 1 MLSEHFFLPWMPRLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGT 60
Query: 61 QSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPALRLQ 117
QSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPALRLQ
Sbjct: 61 QSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPALRLQ 117
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 43.1 bits (100), Expect = 5e-05
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 32 QPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGA 91
QP GK G +RR S + GGG+G AGGG GG P P+ G G
Sbjct: 28 QPPSGKR----GGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGKRGKKSAGCGG 83
Query: 92 RTPASGRCGTSLSHSGPRLPPALRLQ 117
A G G+S P+ L+ Q
Sbjct: 84 GGGAGGGGGSSSGGGSPQSYEELQTQ 109
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 13/53 (24%)
Query: 22 GGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAP 74
GG EP G P+ GK ++ +G GGG+G GG SGGG+P
Sbjct: 61 GGGDEP---GSPAQGKR-------GKKSAGCGGGGGAG---GGGGSSSGGGSP 100
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 40.8 bits (94), Expect = 2e-04
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 36 GKEPEPDGSGRRRESGWARGGGSGTQSQAGG-GGSGGGAPSFPSVGT 81
G P G+G + S A GGG G S GG GGSGGG P GT
Sbjct: 38 GSASGPGGTGGGKASVGAMGGGVGASSSGGGPGGSGGGGSGGPGAGT 84
Score = 40.4 bits (93), Expect = 3e-04
Identities = 33/85 (38%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 31 GQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFP--------SVGTL 82
G PS G P GSGR R S +A GG G GGGG GG+ S P SVG +
Sbjct: 4 GGPSGGG---PGGSGRARTSSFAEPGGGG----GGGGGGPGGSASGPGGTGGGKASVGAM 56
Query: 83 TLPGEATGARTPASGRCGTSLSHSG 107
G GA + G G+ SG
Sbjct: 57 ---GGGVGASSSGGGPGGSGGGGSG 78
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 39.3 bits (90), Expect = 7e-04
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 22 GGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGS---GGGAPSFPS 78
GG ++S Q P S SG GGSG S GGGGS GGG+ S
Sbjct: 202 GGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGS 261
Query: 79 VGTLTLPGEATGARTPASGRCGTSLSHSG 107
++ G G + G G+S+ SG
Sbjct: 262 GCIISGGGSVCGGGSSGGGGGGSSVGGSG 290
Score = 36.2 bits (82), Expect = 0.006
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 51 GWARGGGSGTQSQAGGGGSGGGAPSFPSVG 80
G + GGGSG S GGG SGGG+ F S G
Sbjct: 119 GGSSGGGSGCFSSGGGGSSGGGSGCFSSGG 148
Score = 34.7 bits (78), Expect = 0.017
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 55 GGGSGTQSQAGGGGSGGGAPSFPSVG 80
GGGSG S GGG SGGG+ F S G
Sbjct: 108 GGGSGCFSSGGGGSSGGGSGCFSSGG 133
Score = 30.4 bits (67), Expect = 0.31
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 51 GWARGGGSGTQSQAGG-GGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSG 107
G+ GGGSG S G G SGGG S G + G G G G S+ +SG
Sbjct: 35 GFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSG 92
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 50 SGWARGGGSGTQSQAGGGG-----SGGGA 73
SG + GGGSG S GGGG SGGG+
Sbjct: 166 SGGSSGGGSGCFSSGGGGGSVCGYSGGGS 194
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 43 GSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVG 80
G G G G G + GGG SGGG+ F S G
Sbjct: 71 GGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGG 108
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 39 PEPDGSGRRRESGWARGGGSGTQSQA--GGGGSGGGA 73
P+P + G GGGSG GGGGSGGG+
Sbjct: 10 PQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGS 46
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 51 GWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGAR--TPASGRCGTSLSHSG 107
G + GGGSG S +GGGG G A S G ++ G + G + G G+ +SG
Sbjct: 134 GGSSGGGSGCFS-SGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSG 191
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 43 GSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTS 102
G G G++ GG G S GGGG GG G +G SG G+S
Sbjct: 50 GCGYSGGGGYSGGGCGGGSSGGGGGGGIGGC------------GGGSGGSVKYSGGGGSS 97
Query: 103 LSHSG 107
SG
Sbjct: 98 GGGSG 102
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 44 SGRRRESGWARGGGSGTQSQAGGGGSGGGAP 74
SG G GG G S GG GSG G P
Sbjct: 266 SGGGSVCGGGSSGGGGGGSSVGGSGSGKGVP 296
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 22 GGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGG---SGGGAPSFPS 78
GG + + SG G G SG GG G S GG G SGGG S +
Sbjct: 98 GGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGG--SSGGGSGCFSSGGGGFSGQA 155
Query: 79 VGTLTLPGEATGARTPASGRCGTS 102
V + G ++G + C +S
Sbjct: 156 VQCQSYGGVSSGGSSGGGSGCFSS 179
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 13/47 (27%)
Query: 56 GGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTS 102
GG G GGGGSGGG F G +G + SG CG S
Sbjct: 21 GGGG-----GGGGSGGGGCGF-------FGGGGSGGGSSGSG-CGYS 54
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 43 GSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLT----LPGEATGARTPASGR 98
G G G++ GGGSG GGG SGG + S +T P + G + G
Sbjct: 180 GGGGGSVCGYS-GGGSG----CGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGG 234
Query: 99 CGTS 102
G S
Sbjct: 235 SGGS 238
>gi|170650643 solute carrier family 22, member 23 isoform a [Homo
sapiens]
Length = 686
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 52 WARGGGSGTQ----SQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCG 100
W RG G GT+ + G GG G S P+ T P EA G R+ +SG G
Sbjct: 127 WCRGAGKGTELAGVTTTGRGGDMGNWTSLPTTPFATAPWEAAGNRSNSSGADG 179
>gi|156415990 Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 37.7 bits (86), Expect = 0.002
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 58 SGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPRLPPA 113
+G + GG G GGGA S P+ GT + P G+RTP G T++ SG PPA
Sbjct: 34 AGEPQKGGGAGGGGGAASGPAAGTPSAP----GSRTP--GNPATAV--SGTPAPPA 81
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 27 PWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPG 86
P G+PSPG EP +G + A G +G ++ GGG GGG P + + PG
Sbjct: 333 PLGGGEPSPGAG-EPSKAGPSGATAGASGRATGPEAAGGGGAGGGGGGYRPIIQS---PG 388
Query: 87 EATG 90
TG
Sbjct: 389 YKTG 392
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 37.4 bits (85), Expect = 0.003
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 30 SGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLP--GE 87
+G P PG P G G +G G GGGG GGG P S G + P G
Sbjct: 6 TGGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGG 65
Query: 88 ATGARTPA 95
G R A
Sbjct: 66 GPGIRKDA 73
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/50 (36%), Positives = 19/50 (38%)
Query: 22 GGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGG 71
GG G P PG D G G GG +G SQ GGG G
Sbjct: 19 GGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGGPG 68
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 37.0 bits (84), Expect = 0.003
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 27 PWL--SGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTL 84
PW+ S Q S K P G+ G GGG G+ GGGG GGG P
Sbjct: 131 PWMKESRQTSKLKNNSP-GTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSP------- 182
Query: 85 PGEATGAR 92
PG A R
Sbjct: 183 PGSAASKR 190
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 37 KEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGA---PSFPSVGTLTLPGEATG-AR 92
++ PDG + G GGG G G GG GGG P P T + G G AR
Sbjct: 215 QKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR 274
Query: 93 TPASGRCGTSLSHSGPRL 110
T G L+HS L
Sbjct: 275 TRDDGDEEGLLTHSEEEL 292
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 37 KEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGA---PSFPSVGTLTLPGEATG-AR 92
++ PDG + G GGG G G GG GGG P P T + G G AR
Sbjct: 199 QKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR 258
Query: 93 TPASGRCGTSLSHSGPRL 110
T G L+HS L
Sbjct: 259 TRDDGDEEGLLTHSEEEL 276
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 36 GKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLT------LPGEAT 89
G P P+G+G S GSGT S + GS G P+ P +GT + PG T
Sbjct: 51 GSRPTPEGAGSALGSSGTPSPGSGTSSPSSFTGSPG--PASPGIGTSSPGSLGGSPGFGT 108
Query: 90 GARTPASGRCGTS 102
G +P SG G S
Sbjct: 109 G--SPGSGSGGGS 119
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 30 SGQPSPGK----------EPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGA 73
SG PSPG P P G S + GG G + + G GSGGG+
Sbjct: 66 SGTPSPGSGTSSPSSFTGSPGPASPGIGTSSPGSLGGSPGFGTGSPGSGSGGGS 119
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 35 PGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFP----SVGTLTLPGEATG 90
PG++ + G G GGGS GGG SGGGA S P S G+ G G
Sbjct: 151 PGEKGDKVGGSGGGGHGGGGGGGSSNAGGGGGGASGGGANSKPAQKKSCGSKVAGGAGGG 210
Query: 91 ARTP 94
P
Sbjct: 211 VSKP 214
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 44 SGRRRESGWARGGGSGTQSQAGGGGSGGG 72
SG+R SG+ GGG G S GGGGSGGG
Sbjct: 24 SGKRLSSGFGGGGGGG--SGGGGGGSGGG 50
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 36.6 bits (83), Expect = 0.004
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 51 GWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGA-----RTPASGRCGTSLSH 105
G A GGG+G + GGGG GGG P G PG G+ T + R GT+ S
Sbjct: 626 GAAVGGGAGATAAGGGGGPGGGGGGGPGGG--GGPGGGGGSLYSDVSTGLTWRSGTASSV 683
Query: 106 SGPRLPP 112
S P+ P
Sbjct: 684 SYPKQMP 690
Score = 35.4 bits (80), Expect = 0.010
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 33 PSPGKEPEPDGSGRRR-------ESGWARGGGSGTQSQAGGGGSGGGAPSFPSVG 80
P PG++P P GSG R G RGGG G + G GGG + P G
Sbjct: 170 PPPGEQP-PSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARGGGGGGKARPPGG 223
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 33 PSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGG---APSFPSVGTLTLPGEAT 89
PSP + P G + SG G G + GGG GGG A + P+ G G
Sbjct: 161 PSPPRRLPPPPPGEQPPSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARG----GGGGG 216
Query: 90 GARTPASG 97
AR P G
Sbjct: 217 KARPPGGG 224
>gi|239755943 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 36.2 bits (82), Expect = 0.006
Identities = 32/84 (38%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 11 MPRLFPCRADWGG---RTEP-----WLSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQS 62
MP P RA GG R P WLS QP P + PE GSGR G G+
Sbjct: 1 MPPRAPERAAAGGGKRRGRPQAGARWLSPQPGPARPPEEGGSGRL--------SGRGSVE 52
Query: 63 QAGGGGSGGGAPSFPSVGTLTLPG 86
G G +P P+ G L LPG
Sbjct: 53 GEKGQGKDLLSPRDPAPGQL-LPG 75
>gi|4504713 insulinoma-associated 1 [Homo sapiens]
Length = 510
Score = 36.2 bits (82), Expect = 0.006
Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 55 GGGSGTQSQAGGGGSGGG-----APSFPSVGTLTLPGEATGARTPASGRCGTSLSHSGPR 109
GGG G S AGGGG+ GG AP+ +GT G A AR P GP
Sbjct: 140 GGGGGGASGAGGGGTCGGDPLLFAPAELKMGTAFSAG-AEAARGPG----------PGPP 188
Query: 110 LPPALRLQ 117
LPPA L+
Sbjct: 189 LPPAAALR 196
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 9 PWMPRLFPCRADWGGRTEPWLSGQPSPG--KEPEPDGSGRRRESGWARGGGSGTQSQAGG 66
P ++F C A+ W +P+P + PEP+ + R E+ A GGGS + + G
Sbjct: 298 PECAKVFSCPANLASHRR-WHKPRPAPAAARAPEPEAAA-RAEAREAPGGGSDRDTPSPG 355
Query: 67 GGSGGGA 73
G S G+
Sbjct: 356 GVSESGS 362
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 35.8 bits (81), Expect = 0.007
Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 43 GSGRRRESGWARGGGSGTQSQAG---GGGSGGG 72
GSG R SG + GGGSG+ +G GGGSGGG
Sbjct: 509 GSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGG 541
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 43 GSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTS 102
GSG SG GGGSG++ +GG GG S G+ EA+G+ G G S
Sbjct: 561 GSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKS 620
Query: 103 LSHS 106
SHS
Sbjct: 621 -SHS 623
Score = 33.5 bits (75), Expect = 0.037
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 43 GSGRRRESGWARGGGSGTQSQAG-GGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGT 101
GSG SG GGGSG G GGG GG+ G+ + G G + R G+
Sbjct: 523 GSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGS 582
Query: 102 SLSHSG 107
SH G
Sbjct: 583 GGSHGG 588
Score = 33.1 bits (74), Expect = 0.048
Identities = 27/77 (35%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 31 GQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATG 90
G S G G G SG GGGSG+ GGG GGG+ S G G G
Sbjct: 535 GGGSGGGHSGGSGGGHSGGSGGNYGGGSGS-GGGSGGGYGGGSGSRGGSGGSHGGGSGFG 593
Query: 91 ARTPASGRCGTSLSHSG 107
+ S G S SG
Sbjct: 594 GESGGSYGGGEEASGSG 610
Score = 31.2 bits (69), Expect = 0.18
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 50 SGWARGGGSGTQSQAGG---GGSGGGAPSFPSVGTLTLPGEATGARTPASGRCG 100
SG GGGSG++ +GG GGSG G S G + G + G+ SG G
Sbjct: 502 SGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSG 555
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 30 SGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGA 73
SG S G G G SG GGSG + GG GSGGG+
Sbjct: 526 SGGGSGGGYGGGSGGGHSGGSGGGHSGGSG-GNYGGGSGSGGGS 568
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/68 (35%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 43 GSGRRRESGWARGGGSGTQSQAGGGGSGG---GAPSFPSVGTLTLPGEATGARTPASGRC 99
G G R S GGGS GGGGS G G S +L G G G
Sbjct: 42 GGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGAS 101
Query: 100 GTSLSHSG 107
G S SG
Sbjct: 102 GGGYSSSG 109
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 43 GSGRRRESGWARGGGS--GTQSQAGGGGSGGG 72
G G R SG + G GS G+ GGGGSGGG
Sbjct: 474 GLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGG 505
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 43 GSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTS 102
G G R SG + GGG GGG GGG+ S G G +G + G+
Sbjct: 486 GRGSRGGSGGSYGGGGS------GGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSG 539
Query: 103 LSHSG 107
HSG
Sbjct: 540 GGHSG 544
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 36 GKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPA 95
G + + + SG + RGG G+ + GGSGG S+ G+ G +G+R +
Sbjct: 460 GGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGG---SYGGGGSGGGYGGGSGSRGGS 516
Query: 96 SGRCGTSLSHSG 107
G G G
Sbjct: 517 GGSYGGGSGSGG 528
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 43 GSGRRRESGWARGG-GSGTQSQAGGGGS-GGGAPSFPSVGTLTLPGEATGARTPASGRCG 100
GSG G + GG G G+ S+ G GGS GGG+ S G G G+ SG G
Sbjct: 492 GSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSG----GGYGGGSGGGHSG--G 545
Query: 101 TSLSHSG 107
+ HSG
Sbjct: 546 SGGGHSG 552
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 55 GGGSGTQSQAGGGGSGGGAPSFPSVG 80
GGG G S+ GG SGGG S G
Sbjct: 87 GGGFGGGSRGFGGASGGGYSSSGGFG 112
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 45 GRRRESGWARGGGSGTQSQAG---GGGSGGG 72
G R G A GGG + G GGGSGGG
Sbjct: 92 GGSRGFGGASGGGYSSSGGFGGGFGGGSGGG 122
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 22 GGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAG-GGGSGGGAPSFPSVG 80
GG + L G G SG S GGG G S G GGG G G F G
Sbjct: 79 GGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFG 138
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 35.8 bits (81), Expect = 0.007
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 46 RRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSH 105
+R SG GGGSG GGGGSGGG PS G+ G ++ P++ R S
Sbjct: 2287 QRNHSGGGGGGGSG--GSGGGGGSGGGGA--PSGGSGHSGGPSSCGGAPSTSRSRPS--- 2339
Query: 106 SGPRLPPALR 115
R+P +R
Sbjct: 2340 ---RIPQPVR 2346
Score = 30.4 bits (67), Expect = 0.31
Identities = 28/89 (31%), Positives = 33/89 (37%), Gaps = 21/89 (23%)
Query: 43 GSGRRRESGWARGGG--------SGTQSQAGGGGSGGGAPSFPSVGTLTLP--------- 85
G G SG + GGG SG +GG S GGAPS +P
Sbjct: 2292 GGGGGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQPVRHHPPV 2351
Query: 86 --GEATGARTPASGRCGTSLSHSGPRLPP 112
A ++ A GTS GP LPP
Sbjct: 2352 LVSSAASSQAEADKMSGTST--PGPSLPP 2378
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 35.8 bits (81), Expect = 0.007
Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 23 GRTEPWLSGQPS----PGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPS 78
G EP +GQ S PG++PEP+G A G S T Q+G G G AP
Sbjct: 1002 GLGEPAQAGQQSLEGDPGQDPEPEG---------ALLGSSDTGPQSGEGVPQGAAPE--- 1049
Query: 79 VGTLTLPGEATGARTPASGRCGTSL 103
G P EA GA A C SL
Sbjct: 1050 -GVSEAPAEA-GADREAPAGCRVSL 1072
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 32 QPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGG 72
QP P P P+ SG R S ++G GS S+ SGGG
Sbjct: 894 QPGPTPSPGPN-SGASRRSSASQGAGSRGLSEEKTLRSGGG 933
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 31 GQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQ----AGGGGSGGGAPSFPSVGTLTLPG 86
G+ G GS RR RGGG + + +GG G GGG + T+T
Sbjct: 22 GKGDSGGAGPLSGSARR-----GRGGGGAIRVRRPCWSGGAGRGGGPAWAVRLPTVTAGW 76
Query: 87 EATGARTPASGRCGTSLSHSGPRLPP 112
RT +S R G S HS R PP
Sbjct: 77 TWPALRTLSSLRAGPSEPHSPGRRPP 102
Score = 27.3 bits (59), Expect = 2.6
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 33 PSPGKEPEP--DGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATG 90
P P KEP+ D G R +S + + T S GG + AP P LP G
Sbjct: 191 PGPVKEPQEKEDADGERADSTYGSSSLTYTLSLLGGPEAEDPAPRLP------LP--HVG 242
Query: 91 ARTPASGRCGTSLSHSGPRL 110
A +P T +S G L
Sbjct: 243 ALSPQQLEALTYISEDGDTL 262
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 23 GRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTL 82
G TE + SP G G G GGG G GGGG+GGGA S
Sbjct: 42 GCTEAGRDDRSSPAVRAAGGGGG-----GGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRE 96
Query: 83 TLPGEATGARTPASGR 98
G A +R P S R
Sbjct: 97 LDMGAAERSREPGSPR 112
Score = 33.1 bits (74), Expect = 0.048
Identities = 31/89 (34%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 30 SGQPSPGKEP----EPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLP 85
SG KEP E R + A GGG G GGGG GGG VG
Sbjct: 31 SGPLRGAKEPTGCTEAGRDDRSSPAVRAAGGGGGGGGGGGGGGGGGG------VGGGGAG 84
Query: 86 GEATGARTPA----SGRCGTSLSHSGPRL 110
G A G R+P G S PRL
Sbjct: 85 GGAGGGRSPVRELDMGAAERSREPGSPRL 113
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 35.4 bits (80), Expect = 0.010
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 32 QPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGA 91
QP P P + E ARGGG G GGGG GG P + G PGE G
Sbjct: 56 QPPPAPAPRRERRDLPAEPAAARGGGGG-----GGGGGGGRGPQARARG--GGPGEPRGQ 108
Query: 92 RTPASG 97
+ + G
Sbjct: 109 QPASRG 114
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 22 GGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGS---GTQSQAGGGGSG 70
GG +P + P + P R G GGG G Q++A GGG G
Sbjct: 52 GGGEQPPPAPAPRRERRDLPAEPAAARGGGGGGGGGGGGRGPQARARGGGPG 103
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 35.4 bits (80), Expect = 0.010
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 50 SGWARGGGSGTQSQAGGGGSGG 71
SG GGG G Q Q+GGGGSGG
Sbjct: 186 SGGGSGGGYGNQDQSGGGGSGG 207
Score = 33.9 bits (76), Expect = 0.028
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 43 GSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVG 80
G+GR G RGG G GGG GGG FPS G
Sbjct: 380 GNGR---GGRGRGGPMGRGGYGGGGSGGGGRGGFPSGG 414
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 30 SGQPSPGKEPEPDGSGRRRESGWARG--GGSGTQSQAGGGGSGGGAPSFPSVG 80
SG S G D SG G+ + GG G GGGG GGG + S G
Sbjct: 186 SGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGG 238
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 20/63 (31%)
Query: 30 SGQPSPGKEPE----------PDGSGRRRESGWARGGGSG----------TQSQAGGGGS 69
S QPS G + + P G G++ + + GGG G S + GGGS
Sbjct: 131 SQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGS 190
Query: 70 GGG 72
GGG
Sbjct: 191 GGG 193
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 21 WGGRTEPWLSGQPSPGK-EPEPDGSGRRRESGWARG----GGSGTQSQ----AGGGGSGG 71
+G ++ GQP G +P G+++ G + G G Q+Q +GGGG GG
Sbjct: 113 YGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGG 172
Query: 72 GAPSF 76
G ++
Sbjct: 173 GGGNY 177
Score = 26.2 bits (56), Expect = 5.9
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 20 DWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGW----ARGGGSGTQSQAGGGGSGG 71
D GGR G+ G G G R SG RGGG G + GG GG
Sbjct: 212 DRGGR------GRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGG 261
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 43 GSGRRRESGWARGGGSGTQSQAG---GGGSGGG 72
G G G GGGSG + G GGG GGG
Sbjct: 387 GRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 419
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 35.4 bits (80), Expect = 0.010
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 13 RLFPCRADWGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWA---RGGGSGTQSQAGGG-- 67
RL P D G +T S + S + P P G SGW R GGSG +S A GG
Sbjct: 277 RLSPKHRDEGRKTG---SQRSSGSRSPSPSGG-----SGWGSPQRNGGSGQRSGAHGGRP 328
Query: 68 GSGGGAPSFPSVGTLTLPGEATGA--RTPASGR 98
GS P PS + + +A A PA G+
Sbjct: 329 GSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGK 361
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 21 WGGRTEPWLSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVG 80
+GG + S G G G G+ G G GGG SGGG+ S G
Sbjct: 499 YGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYG 558
Query: 81 TLTLPGEATGARTPASGRCGTSLSHSGPR 109
+ G G ++ +SG G S S GPR
Sbjct: 559 GGSSSG---GHKSSSSGSVGES-SSKGPR 583
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 43 GSGRRRESGWARGGGSGTQSQAG-GGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGT 101
GS SG GGG G S G GGGS GG S G + G G+ +SG G
Sbjct: 476 GSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGS---SSGGYGG 532
Query: 102 SLSHSG 107
S G
Sbjct: 533 GSSGGG 538
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 31 GQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGA 73
G G G G SG GGGS +GGG GG +
Sbjct: 476 GSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSS 518
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 43 GSGRRRESGWARGGGSGTQSQAGG--GGSGGGAPSFPSVGTLTLPGEATGARTPASGRCG 100
G G G + GGG G S GG GG GG S G + G G+ G G
Sbjct: 484 GGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYG 543
Query: 101 TSLSHSG 107
S G
Sbjct: 544 GGSSGGG 550
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 29 LSGQPSPGKEPEPDGSGRRRESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEA 88
L G+ S G G G G GG SG S GG G G G S G G +
Sbjct: 453 LEGEGSSGG----GGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYG-----GGS 503
Query: 89 TGARTPASGRCGTSLS--HSG 107
+G + G G S S H G
Sbjct: 504 SGGGSSGGGYGGGSSSGGHGG 524
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 43 GSGRRRESGWARGGGSGTQSQAGG------GGSGGGAPSFPSVGTLTLPGEATGARTPAS 96
G G G + GGG G S +GG GG GGG+ G G ++G + +
Sbjct: 498 GYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGG---YGGGSSGGGSSSG 554
Query: 97 GRCGTSLSHSG 107
G G S G
Sbjct: 555 GGYGGGSSSGG 565
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 51 GWARGGGSGTQSQAGGGGSGGG 72
G + GGGS GGGG GGG
Sbjct: 104 GGSFGGGSFGGGSFGGGGFGGG 125
>gi|197333809 joined to JAZF1 [Homo sapiens]
Length = 739
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 48 RESGWARGGGSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLSHS 106
++ G GGGSG + +GGGG GG A +V T G +G G CG S+S
Sbjct: 4 QKHGGGGGGGSGPSAGSGGGGFGGSA----AVAAATASGGKSG-----GGSCGGGGSYS 53
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 34.7 bits (78), Expect = 0.017
Identities = 38/110 (34%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 20 DWGGRTEPWLSGQPSPGKEPEPDG-SGRRRESGWA----RGGGSGTQSQAGGGGSGG--- 71
D G EP +G P P EP P G G+R G A R G G + +AG G G
Sbjct: 1364 DKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTG 1423
Query: 72 -----GAPSFPSV-GTLTLPGEATGARTPAS-GRCGTSLSHSGPRLPPAL 114
GAP P G +PG P S G G GP PP L
Sbjct: 1424 PIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGP----PGPMGPPGL 1469
Score = 26.2 bits (56), Expect = 5.9
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 14 LFPCRADWGGRTEPWLSGQPSP-GKEPEPDGSGRRRESGWARG----------GGSGTQS 62
LF + D G R P G P P G + P G + E+G G SG
Sbjct: 1208 LFGQKGDEGPRGFP---GPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPG 1264
Query: 63 QAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASG 97
G G GG + +VG PGEA P G
Sbjct: 1265 ADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEG 1299
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.138 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,986,577
Number of Sequences: 37866
Number of extensions: 478110
Number of successful extensions: 8012
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 604
Number of HSP's that attempted gapping in prelim test: 3622
Number of HSP's gapped (non-prelim): 2938
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.