BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239744305 PREDICTED: hypothetical protein XP_002343094 [Homo sapiens] (114 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239755538 PREDICTED: hypothetical protein [Homo sapiens] 234 1e-62 gi|239749994 PREDICTED: hypothetical protein XP_002347233 [Homo ... 234 1e-62 gi|239744305 PREDICTED: hypothetical protein XP_002343094 [Homo ... 234 1e-62 gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 32 0.11 gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 32 0.11 gi|239753240 PREDICTED: hypothetical protein XP_002345595 [Homo ... 31 0.24 gi|239747803 PREDICTED: hypothetical protein XP_002348320 [Homo ... 31 0.24 gi|239741677 PREDICTED: hypothetical protein XP_002342280 [Homo ... 31 0.24 gi|4503595 eosinophil peroxidase [Homo sapiens] 31 0.24 gi|238859651 pleckstrin homology domain containing family A memb... 29 0.70 gi|145301567 hypothetical protein LOC56006 [Homo sapiens] 29 0.70 gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 29 0.70 gi|74271816 radical fringe [Homo sapiens] 28 1.2 gi|126366080 regulator of G-protein signaling 9 isoform 2 [Homo ... 28 1.2 gi|126365761 regulator of G-protein signaling 9 isoform 1 [Homo ... 28 1.2 gi|29366828 synaptotagmin XII [Homo sapiens] 28 1.2 gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 28 1.6 gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 28 1.6 gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 28 1.6 gi|59806363 hypothetical protein LOC9729 [Homo sapiens] 28 2.0 gi|7662092 zinc finger protein 536 [Homo sapiens] 28 2.0 gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 27 2.7 gi|170650672 Leber congenital amaurosis 5 [Homo sapiens] 27 2.7 gi|170650670 Leber congenital amaurosis 5 [Homo sapiens] 27 2.7 gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 27 2.7 gi|109659847 filamin A interacting protein 1-like isoform 3 [Hom... 27 3.5 gi|109659849 filamin A interacting protein 1-like isoform 2 [Hom... 27 3.5 gi|109659845 filamin A interacting protein 1-like isoform 1 [Hom... 27 3.5 gi|239740928 PREDICTED: hypothetical protein XP_002344099 [Homo ... 27 4.6 gi|45331217 zinc finger protein 526 [Homo sapiens] 27 4.6 >gi|239755538 PREDICTED: hypothetical protein [Homo sapiens] Length = 114 Score = 234 bits (596), Expect = 1e-62 Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MAASGKLLPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRV 60 MAASGKLLPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRV Sbjct: 1 MAASGKLLPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRV 60 Query: 61 QDTSAHPHSAWHRSCGISPQRTVSTLERLKLRGCANSPTFAGPLAGDLVLALPQ 114 QDTSAHPHSAWHRSCGISPQRTVSTLERLKLRGCANSPTFAGPLAGDLVLALPQ Sbjct: 61 QDTSAHPHSAWHRSCGISPQRTVSTLERLKLRGCANSPTFAGPLAGDLVLALPQ 114 >gi|239749994 PREDICTED: hypothetical protein XP_002347233 [Homo sapiens] Length = 114 Score = 234 bits (596), Expect = 1e-62 Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MAASGKLLPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRV 60 MAASGKLLPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRV Sbjct: 1 MAASGKLLPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRV 60 Query: 61 QDTSAHPHSAWHRSCGISPQRTVSTLERLKLRGCANSPTFAGPLAGDLVLALPQ 114 QDTSAHPHSAWHRSCGISPQRTVSTLERLKLRGCANSPTFAGPLAGDLVLALPQ Sbjct: 61 QDTSAHPHSAWHRSCGISPQRTVSTLERLKLRGCANSPTFAGPLAGDLVLALPQ 114 >gi|239744305 PREDICTED: hypothetical protein XP_002343094 [Homo sapiens] Length = 114 Score = 234 bits (596), Expect = 1e-62 Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MAASGKLLPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRV 60 MAASGKLLPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRV Sbjct: 1 MAASGKLLPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRV 60 Query: 61 QDTSAHPHSAWHRSCGISPQRTVSTLERLKLRGCANSPTFAGPLAGDLVLALPQ 114 QDTSAHPHSAWHRSCGISPQRTVSTLERLKLRGCANSPTFAGPLAGDLVLALPQ Sbjct: 61 QDTSAHPHSAWHRSCGISPQRTVSTLERLKLRGCANSPTFAGPLAGDLVLALPQ 114 >gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] Length = 1013 Score = 32.0 bits (71), Expect = 0.11 Identities = 14/26 (53%), Positives = 17/26 (65%) Query: 9 PIPLPPTTRNKYPAPRSTPAATQSSS 34 P+PLPP T P P +T AA+ SSS Sbjct: 64 PLPLPPATGGAAPNPATTTAASSSSS 89 >gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] Length = 1013 Score = 32.0 bits (71), Expect = 0.11 Identities = 14/26 (53%), Positives = 17/26 (65%) Query: 9 PIPLPPTTRNKYPAPRSTPAATQSSS 34 P+PLPP T P P +T AA+ SSS Sbjct: 64 PLPLPPATGGAAPNPATTTAASSSSS 89 >gi|239753240 PREDICTED: hypothetical protein XP_002345595 [Homo sapiens] Length = 180 Score = 30.8 bits (68), Expect = 0.24 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 17 RNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRVQDTSAHPH----SAWH 72 R K P +T + GHRK LG G+ RV+ T PH S Sbjct: 53 RTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVKPTRRPPHQPLSSRST 112 Query: 73 RSCGISPQRTVSTLERLK----LRGCANSP 98 RS SP+RT L + +R CA P Sbjct: 113 RSATRSPRRTGRWLNTMPSWNVVRLCAMQP 142 >gi|239747803 PREDICTED: hypothetical protein XP_002348320 [Homo sapiens] Length = 180 Score = 30.8 bits (68), Expect = 0.24 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 17 RNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRVQDTSAHPH----SAWH 72 R K P +T + GHRK LG G+ RV+ T PH S Sbjct: 53 RTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVKPTRRPPHQPLSSRST 112 Query: 73 RSCGISPQRTVSTLERLK----LRGCANSP 98 RS SP+RT L + +R CA P Sbjct: 113 RSATRSPRRTGRWLNTMPSWNVVRLCAMQP 142 >gi|239741677 PREDICTED: hypothetical protein XP_002342280 [Homo sapiens] Length = 180 Score = 30.8 bits (68), Expect = 0.24 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 17 RNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRVQDTSAHPH----SAWH 72 R K P +T + GHRK LG G+ RV+ T PH S Sbjct: 53 RTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVKPTRRPPHQPLSSRST 112 Query: 73 RSCGISPQRTVSTLERLK----LRGCANSP 98 RS SP+RT L + +R CA P Sbjct: 113 RSATRSPRRTGRWLNTMPSWNVVRLCAMQP 142 >gi|4503595 eosinophil peroxidase [Homo sapiens] Length = 715 Score = 30.8 bits (68), Expect = 0.24 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 21 PAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNL-RVQDTSAHPHSAWHRSCGISP 79 PA + A LR RLF R+ +G + N+ R +D ++AW R CG+S Sbjct: 526 PAKLNRQDAMLVDELRDRLF---RQVRRIGLDLAALNMQRSRDHGLPGYNAWRRFCGLSQ 582 Query: 80 QRTVSTLERL 89 R ++ L R+ Sbjct: 583 PRNLAQLSRV 592 >gi|238859651 pleckstrin homology domain containing family A member 4 isoform 1 [Homo sapiens] Length = 779 Score = 29.3 bits (64), Expect = 0.70 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 3 ASGKLLP-IPLPPT--TRNKYPAPRSTPAATQSSS 34 + G LP +PLPP+ TR + P PRS P A S+ Sbjct: 698 SQGDPLPGVPLPPSDPTRQETPPPRSPPVANSGST 732 >gi|145301567 hypothetical protein LOC56006 [Homo sapiens] Length = 520 Score = 29.3 bits (64), Expect = 0.70 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 3/105 (2%) Query: 13 PPTTRNKYPAPRSTPAATQS-SSLRMRLFQGHRKEENLGQMVREGNLRVQDTSAHPHSAW 71 PP R+K P P + PAA + + L + +EE G + G + T+ P +A Sbjct: 71 PPAERSKQPPPPTAPAAPPAPAPLEKPIVLMKPREEGKGPVAVTGASTPEGTAPPPPAAP 130 Query: 72 HRSCGISP-QRTVSTLERLKLRGCAN-SPTFAGPLAGDLVLALPQ 114 G QR + +++ RG +P P+ G L P+ Sbjct: 131 APPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPE 175 >gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] Length = 609 Score = 29.3 bits (64), Expect = 0.70 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 10/100 (10%) Query: 11 PLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRVQDTSAHPHSA 70 P P TT TP A +++ + R+ L Q+VR+G+ R + +S Sbjct: 264 PTPATTSPGEKGEAGTPVAAGTTAAAIP-----RRHAPLEQLVRQGSFRGFPALSQKNSP 318 Query: 71 WHRSCGISPQRTVSTLER---LKLRGCANSPTFAGPLAGD 107 + R + STL+R +++G P P AGD Sbjct: 319 FKRQLSLRLNELPSTLQRRTDFQVKGTV--PEMEPPGAGD 356 >gi|74271816 radical fringe [Homo sapiens] Length = 331 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Query: 7 LLPIPLPPT---TRNKYPAPRSTPAATQSSSLR 36 LLP+PLP R PAPR+ P+ + SLR Sbjct: 24 LLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLR 56 >gi|126366080 regulator of G-protein signaling 9 isoform 2 [Homo sapiens] Length = 671 Score = 28.5 bits (62), Expect = 1.2 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 44 RKEENLGQMVREGNLRVQDTSAHPHSAWHRSCGISPQ--RTVSTLERLKLRGCANSPTFA 101 +K E G M G + + A ++W RS +P R + R RGC SP FA Sbjct: 535 QKGECSGSMAPRGPSVTESSEASLDTSWPRSRPRAPPKARMALSFSRFLRRGCLASPVFA 594 >gi|126365761 regulator of G-protein signaling 9 isoform 1 [Homo sapiens] Length = 674 Score = 28.5 bits (62), Expect = 1.2 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 44 RKEENLGQMVREGNLRVQDTSAHPHSAWHRSCGISPQ--RTVSTLERLKLRGCANSPTFA 101 +K E G M G + + A ++W RS +P R + R RGC SP FA Sbjct: 538 QKGECSGSMAPRGPSVTESSEASLDTSWPRSRPRAPPKARMALSFSRFLRRGCLASPVFA 597 >gi|29366828 synaptotagmin XII [Homo sapiens] Length = 421 Score = 28.5 bits (62), Expect = 1.2 Identities = 16/45 (35%), Positives = 19/45 (42%) Query: 27 PAATQSSSLRMRLFQGHRKEENLGQMVREGNLRVQDTSAHPHSAW 71 P A + SLR +F E N+ V E L V D P S W Sbjct: 227 PTALEEKSLRFSVFGIDEDERNVSTGVVELKLSVLDLPLQPFSGW 271 >gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo sapiens] Length = 305 Score = 28.1 bits (61), Expect = 1.6 Identities = 15/48 (31%), Positives = 17/48 (35%) Query: 9 PIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREG 56 P P P PAP P A S QG R +E L + G Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSG 234 >gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo sapiens] Length = 305 Score = 28.1 bits (61), Expect = 1.6 Identities = 15/48 (31%), Positives = 17/48 (35%) Query: 9 PIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREG 56 P P P PAP P A S QG R +E L + G Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSG 234 >gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo sapiens] Length = 316 Score = 28.1 bits (61), Expect = 1.6 Identities = 15/48 (31%), Positives = 17/48 (35%) Query: 9 PIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREG 56 P P P PAP P A S QG R +E L + G Sbjct: 198 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSG 245 >gi|59806363 hypothetical protein LOC9729 [Homo sapiens] Length = 694 Score = 27.7 bits (60), Expect = 2.0 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 9/93 (9%) Query: 8 LPIPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEENLGQMVREGNLRVQDTSAHP 67 +P+P+ N P +ST +R QGH + M+ E + R + S P Sbjct: 501 MPVPMENVPDN--PTKKSTTGL-------VRQMQGHLSPRSYRNMLHEHDWRPSNLSGRP 551 Query: 68 HSAWHRSCGISPQRTVSTLERLKLRGCANSPTF 100 SA RS ++ + T E NS F Sbjct: 552 RSADPRSNYGVVEKLLKTYETATESALQNSKCF 584 >gi|7662092 zinc finger protein 536 [Homo sapiens] Length = 1300 Score = 27.7 bits (60), Expect = 2.0 Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 15 TTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEEN 48 T Y P A TQS+SL+ L + HR+ +N Sbjct: 774 TGEKPYKCPHCDYAGTQSASLKYHLERHHRERQN 807 >gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] Length = 548 Score = 27.3 bits (59), Expect = 2.7 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Query: 9 PIPLPPTTRNKYPAP-----RSTPAATQSSSLRMRLFQGH 43 P P PP++ P RS PAA + ++R+R F+ H Sbjct: 508 PPPPPPSSSMASSTPLPWQQRSLPAAAMARAMRVRTFRAH 547 >gi|170650672 Leber congenital amaurosis 5 [Homo sapiens] Length = 697 Score = 27.3 bits (59), Expect = 2.7 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 10 IPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEE-----NLGQMVREGNLR 59 +PL P +K +P +P + S RLF GH ++ G+ GN+R Sbjct: 489 LPLLPDFESKLHSPERSPKTYRFSESSERLFNGHHLQDISFSTPKGEGQNSGNVR 543 >gi|170650670 Leber congenital amaurosis 5 [Homo sapiens] Length = 697 Score = 27.3 bits (59), Expect = 2.7 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 10 IPLPPTTRNKYPAPRSTPAATQSSSLRMRLFQGHRKEE-----NLGQMVREGNLR 59 +PL P +K +P +P + S RLF GH ++ G+ GN+R Sbjct: 489 LPLLPDFESKLHSPERSPKTYRFSESSERLFNGHHLQDISFSTPKGEGQNSGNVR 543 >gi|122937496 WAS/WASL interacting protein family, member 3 [Homo sapiens] Length = 483 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/29 (44%), Positives = 16/29 (55%) Query: 8 LPIPLPPTTRNKYPAPRSTPAATQSSSLR 36 LP P PP P P + P +T +SSLR Sbjct: 11 LPPPPPPLGAPPPPPPSAPPVSTDTSSLR 39 >gi|109659847 filamin A interacting protein 1-like isoform 3 [Homo sapiens] Length = 1133 Score = 26.9 bits (58), Expect = 3.5 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Query: 74 SCG-ISPQRTVSTLERLKLRGCANSP 98 SCG ++P+RT+S ++ L + G A+SP Sbjct: 989 SCGSLTPERTMSPIQVLAVTGSASSP 1014 >gi|109659849 filamin A interacting protein 1-like isoform 2 [Homo sapiens] Length = 893 Score = 26.9 bits (58), Expect = 3.5 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Query: 74 SCG-ISPQRTVSTLERLKLRGCANSP 98 SCG ++P+RT+S ++ L + G A+SP Sbjct: 749 SCGSLTPERTMSPIQVLAVTGSASSP 774 >gi|109659845 filamin A interacting protein 1-like isoform 1 [Homo sapiens] Length = 1135 Score = 26.9 bits (58), Expect = 3.5 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Query: 74 SCG-ISPQRTVSTLERLKLRGCANSP 98 SCG ++P+RT+S ++ L + G A+SP Sbjct: 989 SCGSLTPERTMSPIQVLAVTGSASSP 1014 >gi|239740928 PREDICTED: hypothetical protein XP_002344099 [Homo sapiens] Length = 82 Score = 26.6 bits (57), Expect = 4.6 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Query: 42 GHRKEENL---GQMVREGNLRVQDTSAHPHSAWHRSCGISPQRT 82 G+R+++ Q+ + + V S P +AW+RSC P T Sbjct: 22 GYREKQQWHRSSQLDKNPGVSVVMLSVRPMTAWNRSCAAGPDTT 65 >gi|45331217 zinc finger protein 526 [Homo sapiens] Length = 670 Score = 26.6 bits (57), Expect = 4.6 Identities = 32/129 (24%), Positives = 43/129 (33%), Gaps = 35/129 (27%) Query: 8 LPIPLPPTTRNKYPAPRS-----------------TPA------ATQSSSLRMRLFQGHR 44 +P PLPP T P+P S TP T SL G Sbjct: 173 VPPPLPPPTPLPPPSPPSEVKMEPYECPECSTLCATPEEFLEHQGTHFDSLEKEERNGLE 232 Query: 45 KEENLGQMVREGNLRVQDTSAHPH------------SAWHRSCGISPQRTVSTLERLKLR 92 +EE + E + ++D A + W + CG PQ S R + R Sbjct: 233 EEEEDDEEDEEDDEEMEDEEAMAEVGDDAVGGDESTAGWAQGCGDCPQHQPSAGARRQHR 292 Query: 93 GCANSPTFA 101 A+SP A Sbjct: 293 RTAHSPASA 301 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.130 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,969,136 Number of Sequences: 37866 Number of extensions: 214814 Number of successful extensions: 1118 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 1068 Number of HSP's gapped (non-prelim): 65 length of query: 114 length of database: 18,247,518 effective HSP length: 84 effective length of query: 30 effective length of database: 15,066,774 effective search space: 452003220 effective search space used: 452003220 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.