Guide to the Human Genome
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Name: SYT12 Sequence: fasta or formatted (421aa) NCBI GI: 29366828
Description:

synaptotagmin XII

Referenced in:

ER, Golgi, and the Secretory Pathway
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         33           2
 C cysteine            0.5          2           1
 D aspartate           5.7         24           2
 E glutamate           6.4         27           2
 F phenylalanine       3.8         16           2
 G glycine             6.2         26           1
 H histidine           1.2          5           1
 I isoleucine          4.0         17           2
 K lysine              4.8         20           3
 L leucine            10.5         44           2
 M methionine          2.4         10           1
 N asparagine          3.6         15           1
 P proline             5.5         23           2
 Q glutamine           3.6         15           2
 R arginine            5.5         23           2
 S serine             10.7         45           3
 T threonine           4.8         20           2
 V valine              8.6         36           4
 W tryptophan          1.9          8           1
 Y tyrosine            2.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin XII 
SYT5                  0.182   synaptotagmin V 
SYT6                  0.181   synaptotagmin VI 
SYT2                  0.176   synaptotagmin II 
SYT2                  0.176   synaptotagmin II 
SYT1                  0.167   synaptotagmin I 
SYT1                  0.167   synaptotagmin I 
SYT1                  0.167   synaptotagmin I 
SYT10                 0.166   synaptotagmin X 
SYT9                  0.161   synaptotagmin IX 
SYT3                  0.155   synaptotagmin III 
SYT3                  0.155   synaptotagmin III 
SYT3                  0.155   synaptotagmin III 
SYT4                  0.146   synaptotagmin IV 
SYT17                 0.145   B/K protein 
SYT7                  0.140   synaptotagmin VII 
SYT11                 0.121   synaptotagmin XI 
SYT8                  0.116   synaptotagmin VIII 
SYT15                 0.111   synaptotagmin XV isoform a 
SYT13                 0.106   synaptotagmin XIII 
SYT16                 0.099   synaptotagmin XIV-like 
SYTL4                 0.088   synaptotagmin-like 4 
SYTL4                 0.088   synaptotagmin-like 4 
DOC2B                 0.087   double C2-like domains, beta 
DOC2A                 0.085   double C2-like domains, alpha 
SYT15                 0.079   synaptotagmin XV isoform b 
SYT14                 0.078   synaptotagmin XIV isoform 2 
SYT14                 0.078   synaptotagmin XIV isoform 4 
SYT14                 0.073   synaptotagmin XIV isoform 3 
SYT14                 0.073   synaptotagmin XIV isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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