Guide to the Human Genome
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Name: C4orf50 Sequence: fasta or formatted (276aa) NCBI GI: 46409442
Description:

hypothetical protein LOC389197

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         28           2
 C cysteine            1.8          5           1
 D aspartate           3.6         10           1
 E glutamate           9.4         26           2
 F phenylalanine       0.7          2           1
 G glycine             2.9          8           2
 H histidine           4.0         11           2
 I isoleucine          1.8          5           1
 K lysine              4.0         11           2
 L leucine            17.4         48           3
 M methionine          2.2          6           1
 N asparagine          2.5          7           1
 P proline             6.9         19           1
 Q glutamine           8.0         22           2
 R arginine            5.4         15           1
 S serine              7.6         21           2
 T threonine           5.1         14           1
 V valine              5.1         14           1
 W tryptophan          0.7          2           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC389197 
SYNE1                 0.027   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.027   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.027   spectrin repeat containing, nuclear envelope 1 isof...
NUMA1                 0.027   nuclear mitotic apparatus protein 1 
PLEC1                 0.023   plectin 1 isoform 11 
PLEC1                 0.023   plectin 1 isoform 10 
PLEC1                 0.023   plectin 1 isoform 8 
PLEC1                 0.023   plectin 1 isoform 7 
PLEC1                 0.023   plectin 1 isoform 6 
PLEC1                 0.023   plectin 1 isoform 3 
PLEC1                 0.023   plectin 1 isoform 2 
PLEC1                 0.023   plectin 1 isoform 1 
LOC341378             0.021   PREDICTED: similar to Thyroid hormone receptor inte...
LOC341378             0.021   PREDICTED: similar to Thyroid hormone receptor inte...
LOC341378             0.021   PREDICTED: hypothetical protein 
CROCC                 0.021   ciliary rootlet coiled-coil 
STK36                 0.019   serine/threonine kinase 36 
MYH10                 0.019   myosin, heavy polypeptide 10, non-muscle 
KIF5A                 0.019   kinesin family member 5A 
MAP4K4                0.019   mitogen-activated protein kinase kinase kinase kinas...
SEPT8                 0.019   septin 8 isoform d 
SEPT8                 0.019   septin 8 isoform c 
SEPT8                 0.019   septin 8 isoform a 
SEPT8                 0.019   septin 8 isoform b 
SH3BP5L               0.019   SH3-binding domain protein 5-like 
TNIP2                 0.017   A20-binding inhibitor of NF-kappaB activation 2 iso...
TRIM39                0.017   tripartite motif-containing 39 isoform 2 
TRIM39                0.017   tripartite motif-containing 39 isoform 1 
CIT                   0.017   citron 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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