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Search of human proteins with 239743938
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743938 PREDICTED: hypothetical protein XP_002342976 [Homo
sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749667 PREDICTED: hypothetical protein XP_002347127 [Homo ... 313 4e-86
gi|239743938 PREDICTED: hypothetical protein XP_002342976 [Homo ... 313 4e-86
gi|41399285 chaperonin [Homo sapiens] 29 1.6
gi|31542947 chaperonin [Homo sapiens] 29 1.6
gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a p... 28 2.1
gi|48762934 alpha 2 type I collagen [Homo sapiens] 28 3.6
gi|221139926 NHS-like 1 [Homo sapiens] 27 4.7
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 27 4.7
gi|148596992 heart alpha-kinase [Homo sapiens] 27 4.7
gi|48717423 hypothetical protein LOC401535 [Homo sapiens] 27 6.2
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 27 8.0
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 27 8.0
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 27 8.0
gi|4503483 eukaryotic translation elongation factor 2 [Homo sapi... 27 8.0
gi|31377611 coiled-coil domain containing 148 [Homo sapiens] 27 8.0
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 27 8.0
>gi|239749667 PREDICTED: hypothetical protein XP_002347127 [Homo
sapiens]
Length = 146
Score = 313 bits (801), Expect = 4e-86
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MVRNVGKGQAKQGCECQDEDLKLGKKKIKGLRDWWGGWGRRGRMSGHRGSCSIIRQSRSG 60
MVRNVGKGQAKQGCECQDEDLKLGKKKIKGLRDWWGGWGRRGRMSGHRGSCSIIRQSRSG
Sbjct: 1 MVRNVGKGQAKQGCECQDEDLKLGKKKIKGLRDWWGGWGRRGRMSGHRGSCSIIRQSRSG 60
Query: 61 QSTNVLVLCLQVGQVGLRPLAAAAKSFPDGVAEDGHPGGPSDRWPRATWWPQRVDSAGSR 120
QSTNVLVLCLQVGQVGLRPLAAAAKSFPDGVAEDGHPGGPSDRWPRATWWPQRVDSAGSR
Sbjct: 61 QSTNVLVLCLQVGQVGLRPLAAAAKSFPDGVAEDGHPGGPSDRWPRATWWPQRVDSAGSR 120
Query: 121 CKIRDFASGKLRETEVGGAGVCDLPT 146
CKIRDFASGKLRETEVGGAGVCDLPT
Sbjct: 121 CKIRDFASGKLRETEVGGAGVCDLPT 146
>gi|239743938 PREDICTED: hypothetical protein XP_002342976 [Homo
sapiens]
Length = 146
Score = 313 bits (801), Expect = 4e-86
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MVRNVGKGQAKQGCECQDEDLKLGKKKIKGLRDWWGGWGRRGRMSGHRGSCSIIRQSRSG 60
MVRNVGKGQAKQGCECQDEDLKLGKKKIKGLRDWWGGWGRRGRMSGHRGSCSIIRQSRSG
Sbjct: 1 MVRNVGKGQAKQGCECQDEDLKLGKKKIKGLRDWWGGWGRRGRMSGHRGSCSIIRQSRSG 60
Query: 61 QSTNVLVLCLQVGQVGLRPLAAAAKSFPDGVAEDGHPGGPSDRWPRATWWPQRVDSAGSR 120
QSTNVLVLCLQVGQVGLRPLAAAAKSFPDGVAEDGHPGGPSDRWPRATWWPQRVDSAGSR
Sbjct: 61 QSTNVLVLCLQVGQVGLRPLAAAAKSFPDGVAEDGHPGGPSDRWPRATWWPQRVDSAGSR 120
Query: 121 CKIRDFASGKLRETEVGGAGVCDLPT 146
CKIRDFASGKLRETEVGGAGVCDLPT
Sbjct: 121 CKIRDFASGKLRETEVGGAGVCDLPT 146
>gi|41399285 chaperonin [Homo sapiens]
Length = 573
Score = 28.9 bits (63), Expect = 1.6
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 4 NVGKGQAKQGCECQDEDLKLGKKKIKGLRDWWGGWGRRGRMSGHRGSCSIIRQSRSGQST 63
N KGQ CE QD + L +KKI ++ + HR II + G++
Sbjct: 230 NTSKGQK---CEFQDAYVLLSEKKISSIQSIVPA---LEIANAHRKPLVIIAEDVDGEAL 283
Query: 64 NVLVLCLQVGQVGLRPLAAAAKSFPD 89
+ LV L +VGL+ +A A F D
Sbjct: 284 STLV--LNRLKVGLQVVAVKAPGFGD 307
>gi|31542947 chaperonin [Homo sapiens]
Length = 573
Score = 28.9 bits (63), Expect = 1.6
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 4 NVGKGQAKQGCECQDEDLKLGKKKIKGLRDWWGGWGRRGRMSGHRGSCSIIRQSRSGQST 63
N KGQ CE QD + L +KKI ++ + HR II + G++
Sbjct: 230 NTSKGQK---CEFQDAYVLLSEKKISSIQSIVPA---LEIANAHRKPLVIIAEDVDGEAL 283
Query: 64 NVLVLCLQVGQVGLRPLAAAAKSFPD 89
+ LV L +VGL+ +A A F D
Sbjct: 284 STLV--LNRLKVGLQVVAVKAPGFGD 307
>gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a
precursor [Homo sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 2.1
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 65 VLVLCLQVGQVGLRPLAAAAKSFPDGVAEDGHPGGPSDRWPRATWWP---QRVDSAGSRC 121
+L+L L V GL AA++S G G PGG S R+ W QR G RC
Sbjct: 26 LLLLGLAVVTHGLLRPTAASQSRALG---PGAPGGSSRSSLRSRWGRFLLQRGSWTGPRC 82
Query: 122 KIRDFASGKLRETEVGGAG 140
R F S T V G+G
Sbjct: 83 WPRGFQSKHNSVTHVFGSG 101
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 27.7 bits (60), Expect = 3.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 73 GQVGLRPLAAAAKSFPDGVA-EDGHPGGPSDRWPRATWWPQ 112
GQ G P A + P G A EDGHPG P R PQ
Sbjct: 124 GQTG--PAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQ 162
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 27.3 bits (59), Expect = 4.7
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 25/124 (20%)
Query: 3 RNVGKGQAKQGCECQDEDLKLGKKKIKGLRDWWGGW--GRRGRMSGHRGSCSIIRQS--- 57
R+ G+ + CQ ED+K+ ++ +R G + G SG G+ S++ S
Sbjct: 251 RSAGQRSETRDSSCQTEDVKVVPPSMRRIRAQKGQGIAAQMGHFSGSSGNMSVLSDSAGI 310
Query: 58 ----------------RSGQSTNVLVLCLQVGQVG----LRPLAAAAKSFPDGVAEDGHP 97
RSG N+ L ++G +G + + P GH
Sbjct: 311 VFPSRLDSDAGFHSLPRSGARANIQSLEPRLGALGPAGDMNGTFLYQRGHPQADENLGHL 370
Query: 98 GGPS 101
GG S
Sbjct: 371 GGAS 374
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 27.3 bits (59), Expect = 4.7
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 39 GRRGRM---SGHRGSCSIIRQSRSGQSTNVLVLCLQVGQVGLRPLAAAAKSFPDGVAEDG 95
GRRGRM SG RGS + SRS T++L G+ P + +P E+
Sbjct: 401 GRRGRMAEASGRRGSPRARKASRSQSETSLL------GRASAVP--SGPPKYPTAEREEP 452
Query: 96 HPGGPSDRWPRATWWPQRVDS 116
P P R P T Q S
Sbjct: 453 RPPRPR-RGPAPTLAAQAAGS 472
>gi|148596992 heart alpha-kinase [Homo sapiens]
Length = 2170
Score = 27.3 bits (59), Expect = 4.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 84 AKSFPDGVAEDGHPGGPSDRWPRATWWPQRVDSAGSRCKIRDFASG 129
AK + ED H GG +R+PRA+ ++V S+ ++ SG
Sbjct: 1020 AKYLAVSIPEDKHAGGTEERFPRAS--HEKVSQFPSQVQLDHILSG 1063
>gi|48717423 hypothetical protein LOC401535 [Homo sapiens]
Length = 121
Score = 26.9 bits (58), Expect = 6.2
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 36 GGWGRRGRMSGHRGSCSIIRQSRSGQSTNVLVLCLQVGQVGLRPLAAAAKSFPDGVAE 93
G WG GR G R S+ R R G L C VG G R + K+ + V +
Sbjct: 19 GVWGPSGRTGGQRKGASLARPGRGG-----LASC-SVGANGKRDVLFLRKTLTNTVED 70
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 26.6 bits (57), Expect = 8.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 71 QVGQVGLRPLAA--AAKSFPDGVAEDGHPGGPSDRWPR 106
+VG++GL L K P E G+PG D+ PR
Sbjct: 1899 EVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPR 1936
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 26.6 bits (57), Expect = 8.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 71 QVGQVGLRPLAA--AAKSFPDGVAEDGHPGGPSDRWPR 106
+VG++GL L K P E G+PG D+ PR
Sbjct: 2105 EVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPR 2142
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 26.6 bits (57), Expect = 8.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 71 QVGQVGLRPLAA--AAKSFPDGVAEDGHPGGPSDRWPR 106
+VG++GL L K P E G+PG D+ PR
Sbjct: 1498 EVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPR 1535
>gi|4503483 eukaryotic translation elongation factor 2 [Homo
sapiens]
Length = 858
Score = 26.6 bits (57), Expect = 8.0
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 67 VLCLQVGQVGLRPLAAAAKSFPDGVAEDGHPGGPSDR 103
VLCL L A+ FPDG+AED G S R
Sbjct: 589 VLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSAR 625
>gi|31377611 coiled-coil domain containing 148 [Homo sapiens]
Length = 591
Score = 26.6 bits (57), Expect = 8.0
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 106 RATWWPQRVDSAGSRCKIRDFASGKLRETEVGGAGVCDL 144
+ WW + RCK+ L E +G +CDL
Sbjct: 70 KQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDL 108
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 26.6 bits (57), Expect = 8.0
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 16/55 (29%)
Query: 22 KLGKKKIKGLRDW-------------WGGWGRRGRMSGHRGSCSIIRQSRSGQST 63
KL K+ G R+W WG W R GR G RG S + R G T
Sbjct: 1653 KLRKQHGNGKRNWKTRGTGGRGRWGRWGRWSRGGRGRGGRGRGS---RGRGGGGT 1704
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,382,357
Number of Sequences: 37866
Number of extensions: 296217
Number of successful extensions: 857
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 18
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.