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Search of human proteins with 239743912
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo
sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755134 PREDICTED: hypothetical protein [Homo sapiens] 362 e-101
gi|239749639 PREDICTED: hypothetical protein [Homo sapiens] 362 e-101
gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo ... 362 e-101
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 40 0.001
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 38 0.005
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 37 0.009
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 37 0.012
gi|55750053 atrophin-1 [Homo sapiens] 36 0.020
gi|55750041 atrophin-1 [Homo sapiens] 36 0.020
gi|158534055 round spermatid basic protein 1-like [Homo sapiens] 35 0.027
gi|239757778 PREDICTED: hypothetical protein [Homo sapiens] 35 0.035
gi|47716512 mex-3 homolog B [Homo sapiens] 35 0.035
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 34 0.059
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 34 0.059
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 34 0.059
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 34 0.059
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 33 0.10
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 33 0.10
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 33 0.10
gi|239756056 PREDICTED: similar to hCG2038535 [Homo sapiens] 33 0.10
gi|239750553 PREDICTED: similar to hCG2038535 [Homo sapiens] 33 0.10
gi|239744850 PREDICTED: hypothetical protein XP_002344130 [Homo ... 33 0.10
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 33 0.13
gi|215599585 integrator complex subunit 12 [Homo sapiens] 33 0.13
gi|21361851 integrator complex subunit 12 [Homo sapiens] 33 0.13
gi|24586667 transcription factor-like protein 4 isoform gamma [H... 33 0.13
gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo s... 33 0.17
gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo sa... 33 0.17
>gi|239755134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 362 bits (930), Expect = e-101
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60
MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA
Sbjct: 1 MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60
Query: 61 SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL
Sbjct: 61 SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
Query: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180
LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL
Sbjct: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180
>gi|239749639 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 362 bits (930), Expect = e-101
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60
MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA
Sbjct: 1 MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60
Query: 61 SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL
Sbjct: 61 SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
Query: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180
LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL
Sbjct: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180
>gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo
sapiens]
Length = 180
Score = 362 bits (930), Expect = e-101
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60
MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA
Sbjct: 1 MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60
Query: 61 SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL
Sbjct: 61 SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
Query: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180
LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL
Sbjct: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 39.7 bits (91), Expect = 0.001
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 76 ASGRADVGSAMSCRAGSSPGASSAGQ---------GCRAPPGRERARLGPAAALLAPPSP 126
+S + GS+ S + SS G+ + G+ GC GR + AA A S
Sbjct: 2559 SSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGC-GTGGRNCSAASSRAASPASSSS 2617
Query: 127 QVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
S S S +S S +S SSSSS SS+++SSSS++++SSS S
Sbjct: 2618 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2667
Score = 35.0 bits (79), Expect = 0.035
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 73 GLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFIHH 132
G G GR +C A SS AS A + + +++ + S
Sbjct: 2594 GCGTGGR-------NCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSS------- 2639
Query: 133 LISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
S S S +S S +S SSSSS SS+++SSSS SSC S
Sbjct: 2640 --SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSS 2681
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 94 PGASSAGQGCRAPPGRERARLGPAAALLAPPSP-QVFIHHLISLFPFSFSFASFSFASFS 152
PG + A R PP ++ + P P V HH + + S + +S + +S S
Sbjct: 67 PGPTIATSATRPPPASNEVSTSVLSSTITPAPPMSVLSHHTLHITSNSSTSSSSTTSSTS 126
Query: 153 SSSSPSSTTTSSSSAAATSSS 173
+SS +S+ T+S+S +TSS+
Sbjct: 127 TSSFITSSFTTSTSITSTSST 147
Score = 27.3 bits (59), Expect = 7.3
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
S S + S +S SSS + +ST+T+S+S+ +T+S+ S
Sbjct: 158 STSISITSTSSISSSITSTSTSTTSTSSNSTTSTVTS 194
Score = 26.9 bits (58), Expect = 9.5
Identities = 12/36 (33%), Positives = 28/36 (77%)
Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCI 175
S S ++ + ++F+S++S S+T+TS++S + +++S I
Sbjct: 200 STSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSI 235
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 94 PGASSAGQGCRAPPGRERARLGPAAALLAPPSP-QVFIHHLISLFPFSFSFASFSFASFS 152
PG + A R PP ++ + P P V HH + + S + +S + +S S
Sbjct: 67 PGPTIATSATRPPPASNEVSTSVLSSTITPAPPMSVLSHHTLHITSNSSTSSSSTTSSTS 126
Query: 153 SSSSPSSTTTSSSSAAATSSS 173
+SS +S+ T+S+S +TSS+
Sbjct: 127 TSSFITSSFTTSTSITSTSST 147
Score = 27.3 bits (59), Expect = 7.3
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
S S + S +S SSS + +ST+T+S+S+ +T+S+ S
Sbjct: 158 STSISITSTSSISSSITSTSTSTTSTSSNSTTSTVTS 194
Score = 26.9 bits (58), Expect = 9.5
Identities = 12/36 (33%), Positives = 28/36 (77%)
Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCI 175
S S ++ + ++F+S++S S+T+TS++S + +++S I
Sbjct: 200 STSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSI 235
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.7 bits (86), Expect = 0.005
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 76 ASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARL-------GPAAALLA--PPSP 126
+S + S+ S + SS +SS +G P E A P A+ PP P
Sbjct: 2539 SSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEP 2598
Query: 127 QVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
S S S +S S +S SSSSS SS+++SSSS++++SSS S
Sbjct: 2599 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Score = 33.5 bits (75), Expect = 0.10
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 107 PGRERARLGPAAALLAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSS 166
PG + +G A P L +L P +S S +S SSSSS SS+++SSSS
Sbjct: 2499 PGVPHSDVGEPPASTGAQQPSA----LAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSS 2554
Query: 167 AAATSSS 173
++ +SSS
Sbjct: 2555 SSGSSSS 2561
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 15/104 (14%)
Query: 70 LGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVF 129
L G A+ + G + +PG + G PP A+ A A L P +
Sbjct: 2475 LSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVG--EPPASTGAQQPSALAALQPAKERR- 2531
Query: 130 IHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSS 173
S +S S +S SSSSS SS+++SSSS +++S S
Sbjct: 2532 ------------SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDS 2563
Score = 29.3 bits (64), Expect = 1.9
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 147 SFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
S +S SSSSS SS+++SSSS++++S S S
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 2561
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 120 LLAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLA 178
L A P IH S S S +S S +S SSSSS SS+++SSSS++++SSS S +
Sbjct: 136 LKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFS 194
Score = 33.9 bits (76), Expect = 0.077
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAW 179
S S +S S +S SSSSS SS+++SSSS++++SSS S ++
Sbjct: 154 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSF 193
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 36.6 bits (83), Expect = 0.012
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 69 PLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRA--PPGR-ERARLGPAAALLAPPS 125
P G G + A A + AG+ PG +S Q A PPGR R PA A A S
Sbjct: 26 PAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQAS 85
Query: 126 PQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAAT 170
P + AS + AS S SSS S++ S+S +
Sbjct: 86 P---------------ARASPALASLSRSSSGRSSSARSASVTTS 115
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 91 GSSPGASSAGQGCRA-PPGRERA-RLGPAAALLAPPSPQVFIHHLISLFPFSFSFASFSF 148
G P + GQG PPG E+ L P+ L P S + FP+S S +S +
Sbjct: 327 GHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPPM--RFPYSSSSSSSAA 384
Query: 149 ASFSSSSSPSSTTTSSSSAAATS 171
AS SSSSS SS + +S A S
Sbjct: 385 ASSSSSSSSSSASPFPASQALPS 407
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 91 GSSPGASSAGQGCRA-PPGRERA-RLGPAAALLAPPSPQVFIHHLISLFPFSFSFASFSF 148
G P + GQG PPG E+ L P+ L P S + FP+S S +S +
Sbjct: 327 GHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPPM--RFPYSSSSSSSAA 384
Query: 149 ASFSSSSSPSSTTTSSSSAAATS 171
AS SSSSS SS + +S A S
Sbjct: 385 ASSSSSSSSSSASPFPASQALPS 407
>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
Length = 846
Score = 35.4 bits (80), Expect = 0.027
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 19/135 (14%)
Query: 47 QPPVPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAP 106
+PP P C + + ++P G L S R GS + + + +
Sbjct: 3 EPPSPVHCVAAAAPTATVSEKEPFGK-LQLSSRDPPGSLSAKKVRTEEKKAPRRVNGEGG 61
Query: 107 PGRERARLGPAAALLAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSS 166
G +L P AA PSPQ + S AS+SFA S++ SPSS+ +S S
Sbjct: 62 SGGNSRQLQPPAA----PSPQSY-----------GSPASWSFAPLSAAPSPSSSRSSFSF 106
Query: 167 AAAT---SSSCISLA 178
+A T SS+ SL+
Sbjct: 107 SAGTAVPSSASASLS 121
>gi|239757778 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 35.0 bits (79), Expect = 0.035
Identities = 20/52 (38%), Positives = 23/52 (44%)
Query: 69 PLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
P G G G S R G+ S R + G S+ AP R RAR P A L
Sbjct: 10 PGGTGTGTSTRTSTGTGTSTRTSTGTGTSTRTIPAPAPSARRRARPKPGAQL 61
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 35.0 bits (79), Expect = 0.035
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 75 GASGRADVGSAMSCRAGSSPGASSA---GQGCRAPPG-------RERARLGPAAALLAPP 124
G A V S+ S A SS +SS G G AP R G + L+PP
Sbjct: 385 GGGPAAPVSSSCSSSASSSASSSSVVFPGGGASAPSNANLGLLVHRRLHPGTSCPRLSPP 444
Query: 125 ---SPQVFIHHLISLFPFSFSFASFSFASFSSSSS-------PSSTTTSSSSAAATSSSC 174
+P HHL ++A++++ PS T+ SSSS++++SSS
Sbjct: 445 LHMAPGAGEHHLARRVRSDPGGGGLAYAAYANGLGAQLPGLQPSDTSGSSSSSSSSSSSS 504
Query: 175 ISLAWL 180
S + L
Sbjct: 505 SSSSGL 510
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 34.3 bits (77), Expect = 0.059
Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 48 PPVPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPP 107
PP P LQ L R R G G ++ + R G G+ S+ G
Sbjct: 19 PPPPAAARLQPLFLRGGSFRGRRGSGDSSTSTSTSRGGGGGRRGGGGGSPSSSTGAERED 78
Query: 108 GRERARLG----PAAALLAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTS 163
E + P AALL PP+ A +F+S +++SS +ST TS
Sbjct: 79 DDESLSVSKPLVPNAALLGPPAQ----------VGAPAGPAPVAFSSSAATSSSTSTPTS 128
Query: 164 SSSAAA 169
S S A
Sbjct: 129 SCSMTA 134
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 34.3 bits (77), Expect = 0.059
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 67 RDPLGLGLGASGRADVGSAMSC----RAGSSPGASSAGQGCRAPPGRERARLGPAAALLA 122
R PL G G +GRA SA + R PGA + + R+PP R P A+ LA
Sbjct: 53 RGPLWKGRGPAGRAPAASAETALPRPREPPEPGAGPSPK--RSPPPR-----APRASSLA 105
Query: 123 PPSPQV 128
P PQV
Sbjct: 106 APEPQV 111
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 34.3 bits (77), Expect = 0.059
Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 42 LGLYLQPPVPHVCSLQRLASRWMQVRDPLGLG-------LGASGR---ADVGSAMSCRA- 90
LGL + P V V L R DP G+G LG +GR A G A+ A
Sbjct: 111 LGLLVNPRVAGVDGLDRGGRL-----DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQ 165
Query: 91 -GSSPGASSAGQGCRAPPGRERARLGPA 117
G G + G+G P G+ RARLG A
Sbjct: 166 VGIGAGHARGGRGAVGPAGQHRARLGAA 193
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 34.3 bits (77), Expect = 0.059
Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 42 LGLYLQPPVPHVCSLQRLASRWMQVRDPLGLG-------LGASGR---ADVGSAMSCRA- 90
LGL + P V V L R DP G+G LG +GR A G A+ A
Sbjct: 111 LGLLVNPRVAGVDGLDRGGRL-----DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQ 165
Query: 91 -GSSPGASSAGQGCRAPPGRERARLGPA 117
G G + G+G P G+ RARLG A
Sbjct: 166 VGIGAGHARGGRGAVGPAGQHRARLGAA 193
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 33.5 bits (75), Expect = 0.10
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 147 SFASFSSSSSPSSTTTSSSSAAATSSSC 174
S S SSSSS SS+++SSSS++++SSSC
Sbjct: 137 STGSSSSSSSSSSSSSSSSSSSSSSSSC 164
Score = 31.2 bits (69), Expect = 0.50
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 71 GLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFI 130
G G G+SG G + +P ++A G G A G A++
Sbjct: 83 GGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASST---------- 132
Query: 131 HHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAA 168
P + S S S +S SSSSS SS+++SSSS++
Sbjct: 133 -------PINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 149 ASFSSSSSPSSTTTSSSSAAATSSSCIS 176
AS SSSS SS+++SSSS++++SSS S
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 33.5 bits (75), Expect = 0.10
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 147 SFASFSSSSSPSSTTTSSSSAAATSSSC 174
S S SSSSS SS+++SSSS++++SSSC
Sbjct: 137 STGSSSSSSSSSSSSSSSSSSSSSSSSC 164
Score = 31.2 bits (69), Expect = 0.50
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 71 GLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFI 130
G G G+SG G + +P ++A G G A G A++
Sbjct: 83 GGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASST---------- 132
Query: 131 HHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAA 168
P + S S S +S SSSSS SS+++SSSS++
Sbjct: 133 -------PINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 149 ASFSSSSSPSSTTTSSSSAAATSSSCIS 176
AS SSSS SS+++SSSS++++SSS S
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 33.5 bits (75), Expect = 0.10
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 147 SFASFSSSSSPSSTTTSSSSAAATSSSC 174
S S SSSSS SS+++SSSS++++SSSC
Sbjct: 137 STGSSSSSSSSSSSSSSSSSSSSSSSSC 164
Score = 31.2 bits (69), Expect = 0.50
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 71 GLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFI 130
G G G+SG G + +P ++A G G A G A++
Sbjct: 83 GGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASST---------- 132
Query: 131 HHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAA 168
P + S S S +S SSSSS SS+++SSSS++
Sbjct: 133 -------PINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 149 ASFSSSSSPSSTTTSSSSAAATSSSCIS 176
AS SSSS SS+++SSSS++++SSS S
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
>gi|239756056 PREDICTED: similar to hCG2038535 [Homo sapiens]
Length = 147
Score = 33.5 bits (75), Expect = 0.10
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 58 RLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPA 117
R RW + P R VG + G PG S +GCRAP + G
Sbjct: 31 RRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQ-----GKT 85
Query: 118 AALLAPPSPQVFIHHL 133
+LLA P + + H +
Sbjct: 86 ISLLAAPWAESYFHSI 101
>gi|239750553 PREDICTED: similar to hCG2038535 [Homo sapiens]
Length = 147
Score = 33.5 bits (75), Expect = 0.10
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 58 RLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPA 117
R RW + P R VG + G PG S +GCRAP + G
Sbjct: 31 RRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQ-----GKT 85
Query: 118 AALLAPPSPQVFIHHL 133
+LLA P + + H +
Sbjct: 86 ISLLAAPWAESYFHSI 101
>gi|239744850 PREDICTED: hypothetical protein XP_002344130 [Homo
sapiens]
Length = 147
Score = 33.5 bits (75), Expect = 0.10
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 58 RLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPA 117
R RW + P R VG + G PG S +GCRAP + G
Sbjct: 31 RRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQ-----GKT 85
Query: 118 AALLAPPSPQVFIHHL 133
+LLA P + + H +
Sbjct: 86 ISLLAAPWAESYFHSI 101
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 33.1 bits (74), Expect = 0.13
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 50 VPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSS------PGASSAGQGC 103
+PH LQRL + RD A +++ ++ RAG S PG G
Sbjct: 396 LPHQLLLQRLQEEKDRDRD-------ADQESNISGPLAGRAGQSKISDPGPGPGGVGGAP 448
Query: 104 RAPPGRERARLGPAAALLAPPSP 126
PPG R+ + A APP+P
Sbjct: 449 LPPPGAPRSCIRIRARFPAPPAP 471
>gi|215599585 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 33.1 bits (74), Expect = 0.13
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 69 PLGL-GLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQ 127
P+GL GL S + +GS + ++P + PP + G + ++ +
Sbjct: 330 PVGLTGLATSSKGGIGSKIGSNNSTTPTVP-----LKPPPPLTLGKTGLSRSVSCDNVSK 384
Query: 128 VFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISL 177
V + SL P S S S S +S PS +TTS +++ ++SS SL
Sbjct: 385 VGLPSPSSLVPGSSS--QLSGNGNSGTSGPSGSTTSKTTSESSSSPSASL 432
>gi|21361851 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 33.1 bits (74), Expect = 0.13
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 69 PLGL-GLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQ 127
P+GL GL S + +GS + ++P + PP + G + ++ +
Sbjct: 330 PVGLTGLATSSKGGIGSKIGSNNSTTPTVP-----LKPPPPLTLGKTGLSRSVSCDNVSK 384
Query: 128 VFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISL 177
V + SL P S S S S +S PS +TTS +++ ++SS SL
Sbjct: 385 VGLPSPSSLVPGSSS--QLSGNGNSGTSGPSGSTTSKTTSESSSSPSASL 432
>gi|24586667 transcription factor-like protein 4 isoform gamma [Homo
sapiens]
Length = 298
Score = 33.1 bits (74), Expect = 0.13
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 92 SSPGASSAGQGCRAPPGRERARLGPA---AALLAPPSPQVFI---------HHLISLFPF 139
+SP + AG+G RA GR RAR G A+LL+P SP + + H + +
Sbjct: 15 ASPVGAHAGEG-RA--GRARARRGAGRRGASLLSPKSPTLSVPRGCREDSSHPACAKVEY 71
Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCI 175
++S S F S+ S + ++S +TS+S +
Sbjct: 72 AYSDNSLDPGLFVESTRKGSVVSRANSIGSTSASSV 107
>gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1662
Score = 32.7 bits (73), Expect = 0.17
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 45 YLQPPVPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAG-----SSPGASSA 99
YLQPP P CS Q +S Q G G+ R CR G +P S
Sbjct: 1152 YLQPPAPGRCSCQLRSSPVQQ-----GPGMSREQRRSCDCKRICRGGRPQATQTPVPSLR 1206
Query: 100 G-QGCRAPPGRERARLGPAAALLAPPSPQ 127
G + R P + + GP +L +P + Q
Sbjct: 1207 GRERDRVLPSQRQPEAGPGVSLSSPINVQ 1235
>gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1810
Score = 32.7 bits (73), Expect = 0.17
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 45 YLQPPVPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAG-----SSPGASSA 99
YLQPP P CS Q +S Q G G+ R CR G +P S
Sbjct: 1300 YLQPPAPGRCSCQLRSSPVQQ-----GPGMSREQRRSCDCKRICRGGRPQATQTPVPSLR 1354
Query: 100 G-QGCRAPPGRERARLGPAAALLAPPSPQ 127
G + R P + + GP +L +P + Q
Sbjct: 1355 GRERDRVLPSQRQPEAGPGVSLSSPINVQ 1383
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.129 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,039,269
Number of Sequences: 37866
Number of extensions: 401505
Number of successful extensions: 4973
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 3440
Number of HSP's gapped (non-prelim): 1030
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.