Guide to the Human Genome
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Search of human proteins with 239743912

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo
sapiens]
         (180 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755134 PREDICTED: hypothetical protein [Homo sapiens]           362   e-101
gi|239749639 PREDICTED: hypothetical protein [Homo sapiens]           362   e-101
gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo ...   362   e-101
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         40   0.001
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        38   0.005
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor...    37   0.009
gi|116256363 transmembrane protease, serine 13 [Homo sapiens]          37   0.012
gi|55750053 atrophin-1 [Homo sapiens]                                  36   0.020
gi|55750041 atrophin-1 [Homo sapiens]                                  36   0.020
gi|158534055 round spermatid basic protein 1-like [Homo sapiens]       35   0.027
gi|239757778 PREDICTED: hypothetical protein [Homo sapiens]            35   0.035
gi|47716512 mex-3 homolog B [Homo sapiens]                             35   0.035
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof...    34   0.059
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ...    34   0.059
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]            34   0.059
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]            34   0.059
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]               33   0.10 
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]               33   0.10 
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]               33   0.10 
gi|239756056 PREDICTED: similar to hCG2038535 [Homo sapiens]           33   0.10 
gi|239750553 PREDICTED: similar to hCG2038535 [Homo sapiens]           33   0.10 
gi|239744850 PREDICTED: hypothetical protein XP_002344130 [Homo ...    33   0.10 
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    33   0.13 
gi|215599585 integrator complex subunit 12 [Homo sapiens]              33   0.13 
gi|21361851 integrator complex subunit 12 [Homo sapiens]               33   0.13 
gi|24586667 transcription factor-like protein 4 isoform gamma [H...    33   0.13 
gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo s...    33   0.17 
gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo sa...    33   0.17 

>gi|239755134 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 180

 Score =  362 bits (930), Expect = e-101
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60
           MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA
Sbjct: 1   MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60

Query: 61  SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
           SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL
Sbjct: 61  SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120

Query: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180
           LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL
Sbjct: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180


>gi|239749639 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 180

 Score =  362 bits (930), Expect = e-101
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60
           MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA
Sbjct: 1   MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60

Query: 61  SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
           SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL
Sbjct: 61  SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120

Query: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180
           LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL
Sbjct: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180


>gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo
           sapiens]
          Length = 180

 Score =  362 bits (930), Expect = e-101
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60
           MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA
Sbjct: 1   MSLYFRREDFKIRASNGQFELFTGNTHTASWKGIKKPHVVDLGLYLQPPVPHVCSLQRLA 60

Query: 61  SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
           SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL
Sbjct: 61  SRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120

Query: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180
           LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL
Sbjct: 121 LAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAWL 180


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 10/110 (9%)

Query: 76   ASGRADVGSAMSCRAGSSPGASSAGQ---------GCRAPPGRERARLGPAAALLAPPSP 126
            +S  +  GS+ S  + SS G+ + G+         GC    GR  +     AA  A  S 
Sbjct: 2559 SSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGC-GTGGRNCSAASSRAASPASSSS 2617

Query: 127  QVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
                    S    S S +S S +S SSSSS SS+++SSSS++++SSS  S
Sbjct: 2618 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2667



 Score = 35.0 bits (79), Expect = 0.035
 Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 16/104 (15%)

Query: 73   GLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFIHH 132
            G G  GR       +C A SS  AS A     +      +    +++  +  S       
Sbjct: 2594 GCGTGGR-------NCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSS------- 2639

Query: 133  LISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
              S    S S +S S +S SSSSS SS+++SSSS     SSC S
Sbjct: 2640 --SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSS 2681


>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 737

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 94  PGASSAGQGCRAPPGRERARLGPAAALLAPPSP-QVFIHHLISLFPFSFSFASFSFASFS 152
           PG + A    R PP          ++ + P  P  V  HH + +   S + +S + +S S
Sbjct: 67  PGPTIATSATRPPPASNEVSTSVLSSTITPAPPMSVLSHHTLHITSNSSTSSSSTTSSTS 126

Query: 153 SSSSPSSTTTSSSSAAATSSS 173
           +SS  +S+ T+S+S  +TSS+
Sbjct: 127 TSSFITSSFTTSTSITSTSST 147



 Score = 27.3 bits (59), Expect = 7.3
 Identities = 15/37 (40%), Positives = 26/37 (70%)

Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
           S S +  S +S SSS + +ST+T+S+S+ +T+S+  S
Sbjct: 158 STSISITSTSSISSSITSTSTSTTSTSSNSTTSTVTS 194



 Score = 26.9 bits (58), Expect = 9.5
 Identities = 12/36 (33%), Positives = 28/36 (77%)

Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCI 175
           S S ++ + ++F+S++S S+T+TS++S + +++S I
Sbjct: 200 STSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSI 235


>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 737

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 94  PGASSAGQGCRAPPGRERARLGPAAALLAPPSP-QVFIHHLISLFPFSFSFASFSFASFS 152
           PG + A    R PP          ++ + P  P  V  HH + +   S + +S + +S S
Sbjct: 67  PGPTIATSATRPPPASNEVSTSVLSSTITPAPPMSVLSHHTLHITSNSSTSSSSTTSSTS 126

Query: 153 SSSSPSSTTTSSSSAAATSSS 173
           +SS  +S+ T+S+S  +TSS+
Sbjct: 127 TSSFITSSFTTSTSITSTSST 147



 Score = 27.3 bits (59), Expect = 7.3
 Identities = 15/37 (40%), Positives = 26/37 (70%)

Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
           S S +  S +S SSS + +ST+T+S+S+ +T+S+  S
Sbjct: 158 STSISITSTSSISSSITSTSTSTTSTSSNSTTSTVTS 194



 Score = 26.9 bits (58), Expect = 9.5
 Identities = 12/36 (33%), Positives = 28/36 (77%)

Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCI 175
           S S ++ + ++F+S++S S+T+TS++S + +++S I
Sbjct: 200 STSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSI 235


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 76   ASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARL-------GPAAALLA--PPSP 126
            +S  +   S+ S  + SS  +SS  +G   P   E A          P  A+    PP P
Sbjct: 2539 SSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEP 2598

Query: 127  QVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
                    S    S S +S S +S SSSSS SS+++SSSS++++SSS  S
Sbjct: 2599 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648



 Score = 33.5 bits (75), Expect = 0.10
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 107  PGRERARLGPAAALLAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSS 166
            PG   + +G   A      P      L +L P     +S S +S SSSSS SS+++SSSS
Sbjct: 2499 PGVPHSDVGEPPASTGAQQPSA----LAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSS 2554

Query: 167  AAATSSS 173
            ++ +SSS
Sbjct: 2555 SSGSSSS 2561



 Score = 31.6 bits (70), Expect = 0.38
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 70   LGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVF 129
            L  G  A+  +  G      +  +PG   +  G   PP    A+   A A L P   +  
Sbjct: 2475 LSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVG--EPPASTGAQQPSALAALQPAKERR- 2531

Query: 130  IHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSS 173
                        S +S S +S SSSSS SS+++SSSS +++S S
Sbjct: 2532 ------------SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDS 2563



 Score = 29.3 bits (64), Expect = 1.9
 Identities = 16/30 (53%), Positives = 24/30 (80%)

Query: 147  SFASFSSSSSPSSTTTSSSSAAATSSSCIS 176
            S +S SSSSS SS+++SSSS++++S S  S
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 2561


>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 3 [Homo sapiens]
          Length = 568

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 26/59 (44%), Positives = 36/59 (61%)

Query: 120 LLAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLA 178
           L A   P   IH   S    S S +S S +S SSSSS SS+++SSSS++++SSS  S +
Sbjct: 136 LKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFS 194



 Score = 33.9 bits (76), Expect = 0.077
 Identities = 20/40 (50%), Positives = 31/40 (77%)

Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISLAW 179
           S S +S S +S SSSSS SS+++SSSS++++SSS  S ++
Sbjct: 154 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSF 193


>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
          Length = 567

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 18/105 (17%)

Query: 69  PLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRA--PPGR-ERARLGPAAALLAPPS 125
           P G   G +  A    A +  AG+ PG +S  Q   A  PPGR    R  PA A  A  S
Sbjct: 26  PAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQAS 85

Query: 126 PQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAAT 170
           P               + AS + AS S SSS  S++  S+S   +
Sbjct: 86  P---------------ARASPALASLSRSSSGRSSSARSASVTTS 115


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 91  GSSPGASSAGQGCRA-PPGRERA-RLGPAAALLAPPSPQVFIHHLISLFPFSFSFASFSF 148
           G  P   + GQG    PPG E+   L P+   L P S       +   FP+S S +S + 
Sbjct: 327 GHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPPM--RFPYSSSSSSSAA 384

Query: 149 ASFSSSSSPSSTTTSSSSAAATS 171
           AS SSSSS SS +   +S A  S
Sbjct: 385 ASSSSSSSSSSASPFPASQALPS 407


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 91  GSSPGASSAGQGCRA-PPGRERA-RLGPAAALLAPPSPQVFIHHLISLFPFSFSFASFSF 148
           G  P   + GQG    PPG E+   L P+   L P S       +   FP+S S +S + 
Sbjct: 327 GHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPPM--RFPYSSSSSSSAA 384

Query: 149 ASFSSSSSPSSTTTSSSSAAATS 171
           AS SSSSS SS +   +S A  S
Sbjct: 385 ASSSSSSSSSSASPFPASQALPS 407


>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
          Length = 846

 Score = 35.4 bits (80), Expect = 0.027
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 19/135 (14%)

Query: 47  QPPVPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAP 106
           +PP P  C      +  +  ++P G  L  S R   GS  + +  +    +         
Sbjct: 3   EPPSPVHCVAAAAPTATVSEKEPFGK-LQLSSRDPPGSLSAKKVRTEEKKAPRRVNGEGG 61

Query: 107 PGRERARLGPAAALLAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSS 166
            G    +L P AA    PSPQ +            S AS+SFA  S++ SPSS+ +S S 
Sbjct: 62  SGGNSRQLQPPAA----PSPQSY-----------GSPASWSFAPLSAAPSPSSSRSSFSF 106

Query: 167 AAAT---SSSCISLA 178
           +A T   SS+  SL+
Sbjct: 107 SAGTAVPSSASASLS 121


>gi|239757778 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 93

 Score = 35.0 bits (79), Expect = 0.035
 Identities = 20/52 (38%), Positives = 23/52 (44%)

Query: 69  PLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAAL 120
           P G G G S R   G+  S R  +  G S+      AP  R RAR  P A L
Sbjct: 10  PGGTGTGTSTRTSTGTGTSTRTSTGTGTSTRTIPAPAPSARRRARPKPGAQL 61


>gi|47716512 mex-3 homolog B [Homo sapiens]
          Length = 569

 Score = 35.0 bits (79), Expect = 0.035
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 20/126 (15%)

Query: 75  GASGRADVGSAMSCRAGSSPGASSA---GQGCRAPPG-------RERARLGPAAALLAPP 124
           G    A V S+ S  A SS  +SS    G G  AP           R   G +   L+PP
Sbjct: 385 GGGPAAPVSSSCSSSASSSASSSSVVFPGGGASAPSNANLGLLVHRRLHPGTSCPRLSPP 444

Query: 125 ---SPQVFIHHLISLFPFSFSFASFSFASFSSSSS-------PSSTTTSSSSAAATSSSC 174
              +P    HHL             ++A++++          PS T+ SSSS++++SSS 
Sbjct: 445 LHMAPGAGEHHLARRVRSDPGGGGLAYAAYANGLGAQLPGLQPSDTSGSSSSSSSSSSSS 504

Query: 175 ISLAWL 180
            S + L
Sbjct: 505 SSSSGL 510


>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
           a [Homo sapiens]
          Length = 578

 Score = 34.3 bits (77), Expect = 0.059
 Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 14/126 (11%)

Query: 48  PPVPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPP 107
           PP P    LQ L  R    R   G G  ++  +        R G   G+ S+  G     
Sbjct: 19  PPPPAAARLQPLFLRGGSFRGRRGSGDSSTSTSTSRGGGGGRRGGGGGSPSSSTGAERED 78

Query: 108 GRERARLG----PAAALLAPPSPQVFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTS 163
             E   +     P AALL PP+                  A  +F+S +++SS +ST TS
Sbjct: 79  DDESLSVSKPLVPNAALLGPPAQ----------VGAPAGPAPVAFSSSAATSSSTSTPTS 128

Query: 164 SSSAAA 169
           S S  A
Sbjct: 129 SCSMTA 134


>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
           sapiens]
          Length = 278

 Score = 34.3 bits (77), Expect = 0.059
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 67  RDPLGLGLGASGRADVGSAMSC----RAGSSPGASSAGQGCRAPPGRERARLGPAAALLA 122
           R PL  G G +GRA   SA +     R    PGA  + +  R+PP R      P A+ LA
Sbjct: 53  RGPLWKGRGPAGRAPAASAETALPRPREPPEPGAGPSPK--RSPPPR-----APRASSLA 105

Query: 123 PPSPQV 128
            P PQV
Sbjct: 106 APEPQV 111


>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score = 34.3 bits (77), Expect = 0.059
 Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 17/88 (19%)

Query: 42  LGLYLQPPVPHVCSLQRLASRWMQVRDPLGLG-------LGASGR---ADVGSAMSCRA- 90
           LGL + P V  V  L R         DP G+G       LG +GR   A  G A+   A 
Sbjct: 111 LGLLVNPRVAGVDGLDRGGRL-----DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQ 165

Query: 91  -GSSPGASSAGQGCRAPPGRERARLGPA 117
            G   G +  G+G   P G+ RARLG A
Sbjct: 166 VGIGAGHARGGRGAVGPAGQHRARLGAA 193


>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score = 34.3 bits (77), Expect = 0.059
 Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 17/88 (19%)

Query: 42  LGLYLQPPVPHVCSLQRLASRWMQVRDPLGLG-------LGASGR---ADVGSAMSCRA- 90
           LGL + P V  V  L R         DP G+G       LG +GR   A  G A+   A 
Sbjct: 111 LGLLVNPRVAGVDGLDRGGRL-----DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQ 165

Query: 91  -GSSPGASSAGQGCRAPPGRERARLGPA 117
            G   G +  G+G   P G+ RARLG A
Sbjct: 166 VGIGAGHARGGRGAVGPAGQHRARLGAA 193


>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
          Length = 558

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 17/28 (60%), Positives = 24/28 (85%)

Query: 147 SFASFSSSSSPSSTTTSSSSAAATSSSC 174
           S  S SSSSS SS+++SSSS++++SSSC
Sbjct: 137 STGSSSSSSSSSSSSSSSSSSSSSSSSC 164



 Score = 31.2 bits (69), Expect = 0.50
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 17/98 (17%)

Query: 71  GLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFI 130
           G G G+SG    G      +  +P  ++A  G     G   A  G A++           
Sbjct: 83  GGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASST---------- 132

Query: 131 HHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAA 168
                  P + S  S S +S SSSSS SS+++SSSS++
Sbjct: 133 -------PINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 16/28 (57%), Positives = 23/28 (82%)

Query: 149 ASFSSSSSPSSTTTSSSSAAATSSSCIS 176
           AS  SSSS SS+++SSSS++++SSS  S
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSS 163


>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
          Length = 706

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 17/28 (60%), Positives = 24/28 (85%)

Query: 147 SFASFSSSSSPSSTTTSSSSAAATSSSC 174
           S  S SSSSS SS+++SSSS++++SSSC
Sbjct: 137 STGSSSSSSSSSSSSSSSSSSSSSSSSC 164



 Score = 31.2 bits (69), Expect = 0.50
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 17/98 (17%)

Query: 71  GLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFI 130
           G G G+SG    G      +  +P  ++A  G     G   A  G A++           
Sbjct: 83  GGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASST---------- 132

Query: 131 HHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAA 168
                  P + S  S S +S SSSSS SS+++SSSS++
Sbjct: 133 -------PINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 16/28 (57%), Positives = 23/28 (82%)

Query: 149 ASFSSSSSPSSTTTSSSSAAATSSSCIS 176
           AS  SSSS SS+++SSSS++++SSS  S
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSS 163


>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
          Length = 504

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 17/28 (60%), Positives = 24/28 (85%)

Query: 147 SFASFSSSSSPSSTTTSSSSAAATSSSC 174
           S  S SSSSS SS+++SSSS++++SSSC
Sbjct: 137 STGSSSSSSSSSSSSSSSSSSSSSSSSC 164



 Score = 31.2 bits (69), Expect = 0.50
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 17/98 (17%)

Query: 71  GLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFI 130
           G G G+SG    G      +  +P  ++A  G     G   A  G A++           
Sbjct: 83  GGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASST---------- 132

Query: 131 HHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAA 168
                  P + S  S S +S SSSSS SS+++SSSS++
Sbjct: 133 -------PINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 16/28 (57%), Positives = 23/28 (82%)

Query: 149 ASFSSSSSPSSTTTSSSSAAATSSSCIS 176
           AS  SSSS SS+++SSSS++++SSS  S
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSS 163


>gi|239756056 PREDICTED: similar to hCG2038535 [Homo sapiens]
          Length = 147

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 58  RLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPA 117
           R   RW  +  P         R  VG   +   G  PG S   +GCRAP  +     G  
Sbjct: 31  RRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQ-----GKT 85

Query: 118 AALLAPPSPQVFIHHL 133
            +LLA P  + + H +
Sbjct: 86  ISLLAAPWAESYFHSI 101


>gi|239750553 PREDICTED: similar to hCG2038535 [Homo sapiens]
          Length = 147

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 58  RLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPA 117
           R   RW  +  P         R  VG   +   G  PG S   +GCRAP  +     G  
Sbjct: 31  RRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQ-----GKT 85

Query: 118 AALLAPPSPQVFIHHL 133
            +LLA P  + + H +
Sbjct: 86  ISLLAAPWAESYFHSI 101


>gi|239744850 PREDICTED: hypothetical protein XP_002344130 [Homo
           sapiens]
          Length = 147

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 58  RLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPA 117
           R   RW  +  P         R  VG   +   G  PG S   +GCRAP  +     G  
Sbjct: 31  RRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQ-----GKT 85

Query: 118 AALLAPPSPQVFIHHL 133
            +LLA P  + + H +
Sbjct: 86  ISLLAAPWAESYFHSI 101


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
           sapiens]
          Length = 1747

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 50  VPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSS------PGASSAGQGC 103
           +PH   LQRL     + RD       A   +++   ++ RAG S      PG    G   
Sbjct: 396 LPHQLLLQRLQEEKDRDRD-------ADQESNISGPLAGRAGQSKISDPGPGPGGVGGAP 448

Query: 104 RAPPGRERARLGPAAALLAPPSP 126
             PPG  R+ +   A   APP+P
Sbjct: 449 LPPPGAPRSCIRIRARFPAPPAP 471


>gi|215599585 integrator complex subunit 12 [Homo sapiens]
          Length = 462

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 69  PLGL-GLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQ 127
           P+GL GL  S +  +GS +     ++P         + PP     + G + ++      +
Sbjct: 330 PVGLTGLATSSKGGIGSKIGSNNSTTPTVP-----LKPPPPLTLGKTGLSRSVSCDNVSK 384

Query: 128 VFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISL 177
           V +    SL P S S    S    S +S PS +TTS +++ ++SS   SL
Sbjct: 385 VGLPSPSSLVPGSSS--QLSGNGNSGTSGPSGSTTSKTTSESSSSPSASL 432


>gi|21361851 integrator complex subunit 12 [Homo sapiens]
          Length = 462

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 69  PLGL-GLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQ 127
           P+GL GL  S +  +GS +     ++P         + PP     + G + ++      +
Sbjct: 330 PVGLTGLATSSKGGIGSKIGSNNSTTPTVP-----LKPPPPLTLGKTGLSRSVSCDNVSK 384

Query: 128 VFIHHLISLFPFSFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCISL 177
           V +    SL P S S    S    S +S PS +TTS +++ ++SS   SL
Sbjct: 385 VGLPSPSSLVPGSSS--QLSGNGNSGTSGPSGSTTSKTTSESSSSPSASL 432


>gi|24586667 transcription factor-like protein 4 isoform gamma [Homo
           sapiens]
          Length = 298

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 92  SSPGASSAGQGCRAPPGRERARLGPA---AALLAPPSPQVFI---------HHLISLFPF 139
           +SP  + AG+G RA  GR RAR G     A+LL+P SP + +         H   +   +
Sbjct: 15  ASPVGAHAGEG-RA--GRARARRGAGRRGASLLSPKSPTLSVPRGCREDSSHPACAKVEY 71

Query: 140 SFSFASFSFASFSSSSSPSSTTTSSSSAAATSSSCI 175
           ++S  S     F  S+   S  + ++S  +TS+S +
Sbjct: 72  AYSDNSLDPGLFVESTRKGSVVSRANSIGSTSASSV 107


>gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo
            sapiens]
          Length = 1662

 Score = 32.7 bits (73), Expect = 0.17
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 45   YLQPPVPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAG-----SSPGASSA 99
            YLQPP P  CS Q  +S   Q     G G+    R        CR G      +P  S  
Sbjct: 1152 YLQPPAPGRCSCQLRSSPVQQ-----GPGMSREQRRSCDCKRICRGGRPQATQTPVPSLR 1206

Query: 100  G-QGCRAPPGRERARLGPAAALLAPPSPQ 127
            G +  R  P + +   GP  +L +P + Q
Sbjct: 1207 GRERDRVLPSQRQPEAGPGVSLSSPINVQ 1235


>gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo
            sapiens]
          Length = 1810

 Score = 32.7 bits (73), Expect = 0.17
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 45   YLQPPVPHVCSLQRLASRWMQVRDPLGLGLGASGRADVGSAMSCRAG-----SSPGASSA 99
            YLQPP P  CS Q  +S   Q     G G+    R        CR G      +P  S  
Sbjct: 1300 YLQPPAPGRCSCQLRSSPVQQ-----GPGMSREQRRSCDCKRICRGGRPQATQTPVPSLR 1354

Query: 100  G-QGCRAPPGRERARLGPAAALLAPPSPQ 127
            G +  R  P + +   GP  +L +P + Q
Sbjct: 1355 GRERDRVLPSQRQPEAGPGVSLSSPINVQ 1383


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.129    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,039,269
Number of Sequences: 37866
Number of extensions: 401505
Number of successful extensions: 4973
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 3440
Number of HSP's gapped (non-prelim): 1030
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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