Guide to the Human Genome
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Name: LOC100287432 Sequence: fasta or formatted (147aa) NCBI GI: 239744850
Description:

PREDICTED: hypothetical protein XP_002344130

Not currently referenced in the text

Other entries for this name:
alt mRNA {147aa} PREDICTED: similar to hCG2038535
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         11           2
 C cysteine            2.7          4           1
 D aspartate           1.4          2           1
 E glutamate           3.4          5           1
 F phenylalanine       2.7          4           2
 G glycine            10.9         16           5
 H histidine           3.4          5           1
 I isoleucine          4.8          7           1
 K lysine              5.4          8           1
 L leucine             7.5         11           2
 M methionine          0.7          1           1
 N asparagine          3.4          5           1
 P proline             8.2         12           2
 Q glutamine           6.8         10           2
 R arginine            9.5         14           2
 S serine              7.5         11           2
 T threonine           5.4          8           1
 V valine              3.4          5           1
 W tryptophan          3.4          5           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344130 
LOC100292195          1.000   PREDICTED: similar to hCG2038535 
LOC100287432          1.000   PREDICTED: similar to hCG2038535 
LOC100289917          0.031   PREDICTED: hypothetical protein XP_002347096 
COL9A1                0.031   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.031   alpha 1 type IX collagen isoform 2 precursor 
LOC100292958          0.028   PREDICTED: hypothetical protein 
LOC100288311          0.028   PREDICTED: hypothetical protein 
LOC100288311          0.028   PREDICTED: hypothetical protein XP_002342972 
LOC339192             0.028   PREDICTED: hypothetical protein 
LOC339192             0.028   PREDICTED: hypothetical protein 
LOC339192             0.028   PREDICTED: hypothetical protein 
SP7                   0.024   osterix 
CACNA1I               0.024   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.024   calcium channel, voltage-dependent, T type, alpha 1I...
LOC100133554          0.021   PREDICTED: hypothetical protein 
LOC100133554          0.021   PREDICTED: hypothetical protein 
PTPN13                0.021   protein tyrosine phosphatase, non-receptor type 13 is...
TRIOBP                0.017   TRIO and F-actin binding protein isoform 2 
TRIOBP                0.017   TRIO and F-actin binding protein isoform 1 
RALY                  0.017   RNA binding protein (autoantigenic, hnRNP-associated ...
RALY                  0.017   RNA binding protein (autoantigenic, hnRNP-associated...
LOC649201             0.017   PREDICTED: similar to paraneoplastic antigen MA1 [H...
DHX36                 0.017   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.017   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
SGK2                  0.017   serum/glucocorticoid regulated kinase 2 isoform beta...
HIC2                  0.017   hypermethylated in cancer 2 
LOC100271715          0.014   DH and coiled-coil domain-containing protein 
LOC100128131          0.014   PREDICTED: hypothetical protein 
LOC441722             0.014   PREDICTED: similar to U2 small nuclear RNA auxillary...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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