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Search of human proteins with 239743678
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743678 PREDICTED: hypothetical protein XP_002342943 [Homo
sapiens]
(225 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755040 PREDICTED: hypothetical protein XP_002346201 [Homo ... 485 e-137
gi|239749529 PREDICTED: hypothetical protein XP_002347078 [Homo ... 485 e-137
gi|239743678 PREDICTED: hypothetical protein XP_002342943 [Homo ... 485 e-137
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 37 0.010
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 37 0.010
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 37 0.010
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.018
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 36 0.030
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 36 0.030
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 36 0.030
gi|55956788 nucleolin [Homo sapiens] 35 0.052
gi|28875797 small protein rich in arginine and glycine [Homo sap... 35 0.052
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 35 0.068
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 35 0.068
gi|115511036 alpha-kinase 3 [Homo sapiens] 35 0.068
gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a ... 34 0.088
gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b ... 34 0.088
gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a ... 34 0.088
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 34 0.088
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 34 0.088
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ... 34 0.12
gi|239754584 PREDICTED: hypothetical protein [Homo sapiens] 34 0.12
gi|239754578 PREDICTED: hypothetical protein [Homo sapiens] 34 0.12
gi|239749143 PREDICTED: hypothetical protein XP_002346923 [Homo ... 34 0.12
gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo ... 34 0.12
gi|239743187 PREDICTED: hypothetical protein XP_002342771 [Homo ... 34 0.12
gi|239743182 PREDICTED: hypothetical protein XP_002342770 [Homo ... 34 0.12
gi|239508856 PREDICTED: hypothetical protein [Homo sapiens] 34 0.12
gi|239508847 PREDICTED: hypothetical protein [Homo sapiens] 34 0.12
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
>gi|239755040 PREDICTED: hypothetical protein XP_002346201 [Homo
sapiens]
Length = 225
Score = 485 bits (1249), Expect = e-137
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60
MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG
Sbjct: 1 MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60
Query: 61 GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120
GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF
Sbjct: 61 GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120
Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180
VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP
Sbjct: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180
Query: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225
CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL
Sbjct: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225
>gi|239749529 PREDICTED: hypothetical protein XP_002347078 [Homo
sapiens]
Length = 225
Score = 485 bits (1249), Expect = e-137
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60
MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG
Sbjct: 1 MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60
Query: 61 GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120
GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF
Sbjct: 61 GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120
Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180
VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP
Sbjct: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180
Query: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225
CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL
Sbjct: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225
>gi|239743678 PREDICTED: hypothetical protein XP_002342943 [Homo
sapiens]
Length = 225
Score = 485 bits (1249), Expect = e-137
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60
MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG
Sbjct: 1 MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60
Query: 61 GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120
GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF
Sbjct: 61 GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120
Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180
VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP
Sbjct: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180
Query: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225
CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL
Sbjct: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 37.4 bits (85), Expect = 0.010
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 149 GGFRRRCDPGRRGRR--TGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAG-RGEGGRG 205
GGF RR PG +G + G PG +GTR A +G PG +G RG GG
Sbjct: 1992 GGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAA 2051
Query: 206 REEGSRARS 214
G R R+
Sbjct: 2052 GAPGERGRT 2060
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 37.4 bits (85), Expect = 0.010
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 149 GGFRRRCDPGRRGRR--TGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAG-RGEGGRG 205
GGF RR PG +G + G PG +GTR A +G PG +G RG GG
Sbjct: 2198 GGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAA 2257
Query: 206 REEGSRARS 214
G R R+
Sbjct: 2258 GAPGERGRT 2266
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 37.4 bits (85), Expect = 0.010
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 149 GGFRRRCDPGRRGRR--TGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAG-RGEGGRG 205
GGF RR PG +G + G PG +GTR A +G PG +G RG GG
Sbjct: 1591 GGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAA 1650
Query: 206 REEGSRARS 214
G R R+
Sbjct: 1651 GAPGERGRT 1659
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 36.6 bits (83), Expect = 0.018
Identities = 29/69 (42%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 147 AAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAP-----RSGLPGRRSVDAAAGRGE 201
AAGG RR RR RR+ R RRR AP RS R S D+ +GRG
Sbjct: 379 AAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGA 438
Query: 202 GGRGREEGS 210
G G E GS
Sbjct: 439 PGPGPEPGS 447
Score = 30.4 bits (67), Expect = 1.3
Identities = 73/278 (26%), Positives = 89/278 (32%), Gaps = 81/278 (29%)
Query: 2 GQVTGISTTKPGVRVPSP------GRPARVTAGGRRWRGVTWG------------SSPSE 43
G+ TG S G R PSP G P R G+R G G SSPS
Sbjct: 286 GRKTG-SQRSSGSRSPSPSGGSGWGSPQRNGGSGQR-SGAHGGRPGSAHSPPDKPSSPSP 343
Query: 44 RSAGCASFGNENPHPNGGTERGNPAQVPCV-------------RARLRGQRRQGEEEAEA 90
R A+ P P G E +P P R R R +RR+ A A
Sbjct: 344 RVRDKAAAAAPTP-PARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASA 402
Query: 91 ----GWLDPRHQLILPCYTHTHTNNVSKKFSCDFVPRLSCSSSSWAGECFWGPTPGCWLI 146
G PR P + ++S+ R S S S G GP PG
Sbjct: 403 PRRRGRRRPR-----PAPPRGSSRSLSRA-------RSSSDSGSGRGAPGPGPEPGSER- 449
Query: 147 AAGGFRRRC--------------DPGRRGRRTGGPGRGSGRG--------TRRRCPCAPR 184
GG +R PG GRR G G+ S R + R P R
Sbjct: 450 GHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSR 509
Query: 185 SGLPGRR--------SVDAAAGRGEGGRGREEGSRARS 214
S +R S R + G GR S A +
Sbjct: 510 SRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEA 547
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 35.8 bits (81), Expect = 0.030
Identities = 36/105 (34%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLI--AAGGFRRRCDPGRRGRRTGGPGRGSGR-GTRR 177
VPR S C GP P GG R R RT P G G R+
Sbjct: 149 VPRPRLPSQRRGASCGLGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQ 208
Query: 178 RCPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAAR 222
P LPG R AAG G RG R SV AAAR
Sbjct: 209 AGP------LPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAAR 247
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 35.8 bits (81), Expect = 0.030
Identities = 36/105 (34%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLI--AAGGFRRRCDPGRRGRRTGGPGRGSGR-GTRR 177
VPR S C GP P GG R R RT P G G R+
Sbjct: 149 VPRPRLPSQRRGASCGLGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQ 208
Query: 178 RCPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAAR 222
P LPG R AAG G RG R SV AAAR
Sbjct: 209 AGP------LPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAAR 247
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 35.8 bits (81), Expect = 0.030
Identities = 36/105 (34%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLI--AAGGFRRRCDPGRRGRRTGGPGRGSGR-GTRR 177
VPR S C GP P GG R R RT P G G R+
Sbjct: 149 VPRPRLPSQRRGASCGLGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQ 208
Query: 178 RCPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAAR 222
P LPG R AAG G RG R SV AAAR
Sbjct: 209 AGP------LPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAAR 247
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 35.0 bits (79), Expect = 0.052
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 158 GRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRAR 213
GR G R G GRG GRG R R G GR GRG GG + +G + +
Sbjct: 655 GRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGF--RGGRGGGGDHKPQGKKTK 708
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 35.0 bits (79), Expect = 0.052
Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 149 GGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRGEGGRGREE 208
GG R R PGR G G GRG G R R G GR GR GRGR
Sbjct: 154 GGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGR-------GR---GRGRGR 203
Query: 209 GSRARSV 215
G+ AR V
Sbjct: 204 GALARPV 210
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 34.7 bits (78), Expect = 0.068
Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 160 RGRRTG-GPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRGEGGRGREE 208
RGR G G GRG GRG R P + SGL G G G GG R E
Sbjct: 76 RGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 34.7 bits (78), Expect = 0.068
Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 160 RGRRTG-GPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRGEGGRGREE 208
RGR G G GRG GRG R P + SGL G G G GG R E
Sbjct: 76 RGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 34.7 bits (78), Expect = 0.068
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 138 GPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAA 197
GP G W A G + PGR PG G + T R P R G R+ AAA
Sbjct: 122 GPGAGTWAPAPPGVSKPRCPGR-----ARPGEGQQQVTTARPPAINR-GARQPRAGAAAA 175
Query: 198 GRGEGGRGREEGSRARS 214
GRG G G A S
Sbjct: 176 GRGPGAGAWRTGEAAAS 192
>gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 34.3 bits (77), Expect = 0.088
Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 149 GGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGR--------G 200
GGF D RRGR G P RG G R R P RR D + R G
Sbjct: 237 GGFTMMFDD-RRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPG 295
Query: 201 EGGRGREEGSRARSV 215
GGRG GSRAR++
Sbjct: 296 RGGRG---GSRARNL 307
>gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b
[Homo sapiens]
Length = 463
Score = 34.3 bits (77), Expect = 0.088
Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 149 GGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGR--------G 200
GGF D RRGR G P RG G R R P RR D + R G
Sbjct: 237 GGFTMMFDD-RRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPG 295
Query: 201 EGGRGREEGSRARSV 215
GGRG GSRAR++
Sbjct: 296 RGGRG---GSRARNL 307
>gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 34.3 bits (77), Expect = 0.088
Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 149 GGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGR--------G 200
GGF D RRGR G P RG G R R P RR D + R G
Sbjct: 237 GGFTMMFDD-RRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPG 295
Query: 201 EGGRGREEGSRARSV 215
GGRG GSRAR++
Sbjct: 296 RGGRG---GSRARNL 307
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 34.3 bits (77), Expect = 0.088
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 158 GRRGRRTGGPG---RGSGRGTRRRCPC---APRSGLPGRRSVDAAAGRGEGGRGREEGSR 211
GRR RR GPG GS C AP S L RR + G GGRG G R
Sbjct: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASAL--RRPLTQWDASGGGGRGSHSGPR 164
Query: 212 ARSVDVCAAARAG 224
A + ++RAG
Sbjct: 165 AGTPGGGRSSRAG 177
Score = 28.9 bits (63), Expect = 3.7
Identities = 34/106 (32%), Positives = 39/106 (36%), Gaps = 19/106 (17%)
Query: 122 PRLSCSSSSWA---GECFWGPTPGCWLI-------AAGGFRRRCDPGRRGRRTGGPGRGS 171
P L C+ S+ A + GP P L A+GG R G R GG GR S
Sbjct: 116 PGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGG-GRSS 174
Query: 172 GRGTRRR-----CPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRA 212
G RR+ CP R G R G GG G RA
Sbjct: 175 RAGARRKTPLSLCPLKLRKGSSRRCQ---GLGSSWGGSGTPPPPRA 217
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 34.3 bits (77), Expect = 0.088
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 158 GRRGRRTGGPG---RGSGRGTRRRCPC---APRSGLPGRRSVDAAAGRGEGGRGREEGSR 211
GRR RR GPG GS C AP S L RR + G GGRG G R
Sbjct: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASAL--RRPLTQWDASGGGGRGSHSGPR 164
Query: 212 ARSVDVCAAARAG 224
A + ++RAG
Sbjct: 165 AGTPGGGRSSRAG 177
Score = 28.9 bits (63), Expect = 3.7
Identities = 34/106 (32%), Positives = 39/106 (36%), Gaps = 19/106 (17%)
Query: 122 PRLSCSSSSWA---GECFWGPTPGCWLI-------AAGGFRRRCDPGRRGRRTGGPGRGS 171
P L C+ S+ A + GP P L A+GG R G R GG GR S
Sbjct: 116 PGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGG-GRSS 174
Query: 172 GRGTRRR-----CPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRA 212
G RR+ CP R G R G GG G RA
Sbjct: 175 RAGARRKTPLSLCPLKLRKGSSRRCQ---GLGSSWGGSGTPPPPRA 217
>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 33.9 bits (76), Expect = 0.12
Identities = 53/216 (24%), Positives = 70/216 (32%), Gaps = 54/216 (25%)
Query: 8 STTKPGVRVPSPGRPA-RVTAGGRRWRGVTWGSSPSERSAGCASFGNENP---------- 56
S K G+ P RPA V G W G P +R+ G A+ ++
Sbjct: 173 SLCKSGLCCAHPVRPAGHVACGAGIWTRAQAG--PHKRAVGAAAGAAQSSGLFSKWVPCQ 230
Query: 57 ----HPNGGTERGNPAQV-------PCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYT 105
HP G P + PC A RQG EA+
Sbjct: 231 PLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQG--------------- 275
Query: 106 HTHTNNVSKKFSCDFVPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCD-PGRRGRRT 164
++ S D +P L+C S G+C PT G G +C PG G R+
Sbjct: 276 -------TRGGSADGIPELTCYQRSKCGKCGTVPTQG-----PPGTNPQCAMPGASGTRS 323
Query: 165 GGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRG 200
P R +C G PG + A G G
Sbjct: 324 --PIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAG 357
>gi|239754584 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
P GC G FR + PG + RR G GRG+G G R A + G R V A
Sbjct: 38 PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91
>gi|239754578 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
P GC G FR + PG + RR G GRG+G G R A + G R V A
Sbjct: 38 PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91
>gi|239749143 PREDICTED: hypothetical protein XP_002346923 [Homo
sapiens]
Length = 148
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
P GC G FR + PG + RR G GRG+G G R A + G R V A
Sbjct: 38 PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91
>gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 33.9 bits (76), Expect = 0.12
Identities = 53/216 (24%), Positives = 70/216 (32%), Gaps = 54/216 (25%)
Query: 8 STTKPGVRVPSPGRPA-RVTAGGRRWRGVTWGSSPSERSAGCASFGNENP---------- 56
S K G+ P RPA V G W G P +R+ G A+ ++
Sbjct: 173 SLCKSGLCCAHPVRPAGHVACGAGIWTRAQAG--PHKRAVGAAAGAAQSSGLFSKWVPCQ 230
Query: 57 ----HPNGGTERGNPAQV-------PCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYT 105
HP G P + PC A RQG EA+
Sbjct: 231 PLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQG--------------- 275
Query: 106 HTHTNNVSKKFSCDFVPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCD-PGRRGRRT 164
++ S D +P L+C S G+C PT G G +C PG G R+
Sbjct: 276 -------TRGGSADGIPELTCYQRSKCGKCGTVPTQG-----PPGTNPQCAMPGASGTRS 323
Query: 165 GGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRG 200
P R +C G PG + A G G
Sbjct: 324 --PIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAG 357
>gi|239743187 PREDICTED: hypothetical protein XP_002342771 [Homo
sapiens]
Length = 148
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
P GC G FR + PG + RR G GRG+G G R A + G R V A
Sbjct: 38 PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91
>gi|239743182 PREDICTED: hypothetical protein XP_002342770 [Homo
sapiens]
Length = 148
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
P GC G FR + PG + RR G GRG+G G R A + G R V A
Sbjct: 38 PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91
>gi|239508856 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
P GC G FR + PG + RR G GRG+G G R A + G R V A
Sbjct: 38 PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91
>gi|239508847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
P GC G FR + PG + RR G GRG+G G R A + G R V A
Sbjct: 38 PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 33.5 bits (75), Expect = 0.15
Identities = 35/100 (35%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 128 SSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGR--GSGRGTRRRCPCAPRS 185
S++ AG P P C L+ G+ R PG G P G+ R + R P PR
Sbjct: 14 SAAPAGSSLNSPDP-CQLLPGTGWMMR--PGEVAPAGGSPLAVGGAFRVSSPR-PFPPRP 69
Query: 186 GLPGRRSVDAAAGRGEGGRGRE--EGSRARSVDVCAAARA 223
P RR G G RGRE GSR A ARA
Sbjct: 70 ERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARA 109
Score = 27.7 bits (60), Expect = 8.3
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 11 KPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERS----AGCASFGNENPHPNGGTERG- 65
+PG P+ G P V R + P S AGC + G P G R
Sbjct: 39 RPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHG---PGSRGRERRRG 95
Query: 66 --NPAQVPCVRARLRGQRRQGEEEAEAGWLDP 95
+P P RAR RG+ G + +G P
Sbjct: 96 SRDPPAGPVARARARGRSAPGSAQPASGAAGP 127
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,021,115
Number of Sequences: 37866
Number of extensions: 753703
Number of successful extensions: 4286
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 3799
Number of HSP's gapped (non-prelim): 746
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.