Guide to the Human Genome
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Search of human proteins with 239743678

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743678 PREDICTED: hypothetical protein XP_002342943 [Homo
sapiens]
         (225 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755040 PREDICTED: hypothetical protein XP_002346201 [Homo ...   485   e-137
gi|239749529 PREDICTED: hypothetical protein XP_002347078 [Homo ...   485   e-137
gi|239743678 PREDICTED: hypothetical protein XP_002342943 [Homo ...   485   e-137
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s...    37   0.010
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    37   0.010
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ...    37   0.010
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             37   0.018
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ...    36   0.030
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ...    36   0.030
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ...    36   0.030
gi|55956788 nucleolin [Homo sapiens]                                   35   0.052
gi|28875797 small protein rich in arginine and glycine [Homo sap...    35   0.052
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i...    35   0.068
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s...    35   0.068
gi|115511036 alpha-kinase 3 [Homo sapiens]                             35   0.068
gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a ...    34   0.088
gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b ...    34   0.088
gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a ...    34   0.088
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]            34   0.088
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]            34   0.088
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ...    34   0.12 
gi|239754584 PREDICTED: hypothetical protein [Homo sapiens]            34   0.12 
gi|239754578 PREDICTED: hypothetical protein [Homo sapiens]            34   0.12 
gi|239749143 PREDICTED: hypothetical protein XP_002346923 [Homo ...    34   0.12 
gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo ...    34   0.12 
gi|239743187 PREDICTED: hypothetical protein XP_002342771 [Homo ...    34   0.12 
gi|239743182 PREDICTED: hypothetical protein XP_002342770 [Homo ...    34   0.12 
gi|239508856 PREDICTED: hypothetical protein [Homo sapiens]            34   0.12 
gi|239508847 PREDICTED: hypothetical protein [Homo sapiens]            34   0.12 
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]            33   0.15 

>gi|239755040 PREDICTED: hypothetical protein XP_002346201 [Homo
           sapiens]
          Length = 225

 Score =  485 bits (1249), Expect = e-137
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60
           MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG
Sbjct: 1   MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60

Query: 61  GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120
           GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF
Sbjct: 61  GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120

Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180
           VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP
Sbjct: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180

Query: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225
           CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL
Sbjct: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225


>gi|239749529 PREDICTED: hypothetical protein XP_002347078 [Homo
           sapiens]
          Length = 225

 Score =  485 bits (1249), Expect = e-137
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60
           MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG
Sbjct: 1   MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60

Query: 61  GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120
           GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF
Sbjct: 61  GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120

Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180
           VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP
Sbjct: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180

Query: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225
           CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL
Sbjct: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225


>gi|239743678 PREDICTED: hypothetical protein XP_002342943 [Homo
           sapiens]
          Length = 225

 Score =  485 bits (1249), Expect = e-137
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60
           MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG
Sbjct: 1   MGQVTGISTTKPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERSAGCASFGNENPHPNG 60

Query: 61  GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120
           GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF
Sbjct: 61  GTERGNPAQVPCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYTHTHTNNVSKKFSCDF 120

Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180
           VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP
Sbjct: 121 VPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCP 180

Query: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225
           CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL
Sbjct: 181 CAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAARAGL 225


>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
            sapiens]
          Length = 2971

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 149  GGFRRRCDPGRRGRR--TGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAG-RGEGGRG 205
            GGF RR  PG +G +   G PG    +GTR     A  +G PG       +G RG GG  
Sbjct: 1992 GGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAA 2051

Query: 206  REEGSRARS 214
               G R R+
Sbjct: 2052 GAPGERGRT 2060


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
            sapiens]
          Length = 3177

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 149  GGFRRRCDPGRRGRR--TGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAG-RGEGGRG 205
            GGF RR  PG +G +   G PG    +GTR     A  +G PG       +G RG GG  
Sbjct: 2198 GGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAA 2257

Query: 206  REEGSRARS 214
               G R R+
Sbjct: 2258 GAPGERGRT 2266


>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
            sapiens]
          Length = 2570

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 149  GGFRRRCDPGRRGRR--TGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAG-RGEGGRG 205
            GGF RR  PG +G +   G PG    +GTR     A  +G PG       +G RG GG  
Sbjct: 1591 GGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAA 1650

Query: 206  REEGSRARS 214
               G R R+
Sbjct: 1651 GAPGERGRT 1659


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 29/69 (42%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 147 AAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAP-----RSGLPGRRSVDAAAGRGE 201
           AAGG  RR    RR RR+        R  RRR   AP     RS    R S D+ +GRG 
Sbjct: 379 AAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGA 438

Query: 202 GGRGREEGS 210
            G G E GS
Sbjct: 439 PGPGPEPGS 447



 Score = 30.4 bits (67), Expect = 1.3
 Identities = 73/278 (26%), Positives = 89/278 (32%), Gaps = 81/278 (29%)

Query: 2   GQVTGISTTKPGVRVPSP------GRPARVTAGGRRWRGVTWG------------SSPSE 43
           G+ TG S    G R PSP      G P R    G+R  G   G            SSPS 
Sbjct: 286 GRKTG-SQRSSGSRSPSPSGGSGWGSPQRNGGSGQR-SGAHGGRPGSAHSPPDKPSSPSP 343

Query: 44  RSAGCASFGNENPHPNGGTERGNPAQVPCV-------------RARLRGQRRQGEEEAEA 90
           R    A+     P P  G E  +P   P               R R R +RR+    A A
Sbjct: 344 RVRDKAAAAAPTP-PARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASA 402

Query: 91  ----GWLDPRHQLILPCYTHTHTNNVSKKFSCDFVPRLSCSSSSWAGECFWGPTPGCWLI 146
               G   PR     P      + ++S+        R S  S S  G    GP PG    
Sbjct: 403 PRRRGRRRPR-----PAPPRGSSRSLSRA-------RSSSDSGSGRGAPGPGPEPGSER- 449

Query: 147 AAGGFRRRC--------------DPGRRGRRTGGPGRGSGRG--------TRRRCPCAPR 184
             GG  +R                PG  GRR G  G+ S R         +  R P   R
Sbjct: 450 GHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSR 509

Query: 185 SGLPGRR--------SVDAAAGRGEGGRGREEGSRARS 214
           S    +R        S      R + G GR   S A +
Sbjct: 510 SRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEA 547


>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
           sapiens]
          Length = 355

 Score = 35.8 bits (81), Expect = 0.030
 Identities = 36/105 (34%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLI--AAGGFRRRCDPGRRGRRTGGPGRGSGR-GTRR 177
           VPR    S      C  GP P         GG   R    R   RT  P  G    G R+
Sbjct: 149 VPRPRLPSQRRGASCGLGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQ 208

Query: 178 RCPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAAR 222
             P      LPG R    AAG G   RG     R  SV   AAAR
Sbjct: 209 AGP------LPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAAR 247


>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
           sapiens]
          Length = 355

 Score = 35.8 bits (81), Expect = 0.030
 Identities = 36/105 (34%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLI--AAGGFRRRCDPGRRGRRTGGPGRGSGR-GTRR 177
           VPR    S      C  GP P         GG   R    R   RT  P  G    G R+
Sbjct: 149 VPRPRLPSQRRGASCGLGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQ 208

Query: 178 RCPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAAR 222
             P      LPG R    AAG G   RG     R  SV   AAAR
Sbjct: 209 AGP------LPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAAR 247


>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
           sapiens]
          Length = 355

 Score = 35.8 bits (81), Expect = 0.030
 Identities = 36/105 (34%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 121 VPRLSCSSSSWAGECFWGPTPGCWLI--AAGGFRRRCDPGRRGRRTGGPGRGSGR-GTRR 177
           VPR    S      C  GP P         GG   R    R   RT  P  G    G R+
Sbjct: 149 VPRPRLPSQRRGASCGLGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQ 208

Query: 178 RCPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRARSVDVCAAAR 222
             P      LPG R    AAG G   RG     R  SV   AAAR
Sbjct: 209 AGP------LPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAAR 247


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 158 GRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRAR 213
           GR G R G  GRG GRG R       R G  GR       GRG GG  + +G + +
Sbjct: 655 GRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGF--RGGRGGGGDHKPQGKKTK 708


>gi|28875797 small protein rich in arginine and glycine [Homo
           sapiens]
          Length = 248

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 149 GGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRGEGGRGREE 208
           GG R R  PGR G   G  GRG   G  R      R G  GR       GR   GRGR  
Sbjct: 154 GGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGR-------GR---GRGRGR 203

Query: 209 GSRARSV 215
           G+ AR V
Sbjct: 204 GALARPV 210


>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
           isoform [Homo sapiens]
          Length = 302

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 160 RGRRTG-GPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRGEGGRGREE 208
           RGR  G G GRG GRG  R  P +  SGL G        G G GG  R E
Sbjct: 76  RGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125


>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
           sapiens]
          Length = 411

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 160 RGRRTG-GPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRGEGGRGREE 208
           RGR  G G GRG GRG  R  P +  SGL G        G G GG  R E
Sbjct: 76  RGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125


>gi|115511036 alpha-kinase 3 [Homo sapiens]
          Length = 1907

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 138 GPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAA 197
           GP  G W  A  G  +   PGR       PG G  + T  R P   R G    R+  AAA
Sbjct: 122 GPGAGTWAPAPPGVSKPRCPGR-----ARPGEGQQQVTTARPPAINR-GARQPRAGAAAA 175

Query: 198 GRGEGGRGREEGSRARS 214
           GRG G      G  A S
Sbjct: 176 GRGPGAGAWRTGEAAAS 192


>gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a
           [Homo sapiens]
          Length = 464

 Score = 34.3 bits (77), Expect = 0.088
 Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 149 GGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGR--------G 200
           GGF    D  RRGR  G P RG G   R       R   P RR  D  + R        G
Sbjct: 237 GGFTMMFDD-RRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPG 295

Query: 201 EGGRGREEGSRARSV 215
            GGRG   GSRAR++
Sbjct: 296 RGGRG---GSRARNL 307


>gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b
           [Homo sapiens]
          Length = 463

 Score = 34.3 bits (77), Expect = 0.088
 Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 149 GGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGR--------G 200
           GGF    D  RRGR  G P RG G   R       R   P RR  D  + R        G
Sbjct: 237 GGFTMMFDD-RRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPG 295

Query: 201 EGGRGREEGSRARSV 215
            GGRG   GSRAR++
Sbjct: 296 RGGRG---GSRARNL 307


>gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a
           [Homo sapiens]
          Length = 464

 Score = 34.3 bits (77), Expect = 0.088
 Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 149 GGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGR--------G 200
           GGF    D  RRGR  G P RG G   R       R   P RR  D  + R        G
Sbjct: 237 GGFTMMFDD-RRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPG 295

Query: 201 EGGRGREEGSRARSV 215
            GGRG   GSRAR++
Sbjct: 296 RGGRG---GSRARNL 307


>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 34.3 bits (77), Expect = 0.088
 Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 158 GRRGRRTGGPG---RGSGRGTRRRCPC---APRSGLPGRRSVDAAAGRGEGGRGREEGSR 211
           GRR RR  GPG    GS         C   AP S L  RR +      G GGRG   G R
Sbjct: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASAL--RRPLTQWDASGGGGRGSHSGPR 164

Query: 212 ARSVDVCAAARAG 224
           A +     ++RAG
Sbjct: 165 AGTPGGGRSSRAG 177



 Score = 28.9 bits (63), Expect = 3.7
 Identities = 34/106 (32%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 122 PRLSCSSSSWA---GECFWGPTPGCWLI-------AAGGFRRRCDPGRRGRRTGGPGRGS 171
           P L C+ S+ A    +   GP P   L        A+GG  R    G R    GG GR S
Sbjct: 116 PGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGG-GRSS 174

Query: 172 GRGTRRR-----CPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRA 212
             G RR+     CP   R G   R       G   GG G     RA
Sbjct: 175 RAGARRKTPLSLCPLKLRKGSSRRCQ---GLGSSWGGSGTPPPPRA 217


>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 34.3 bits (77), Expect = 0.088
 Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 158 GRRGRRTGGPG---RGSGRGTRRRCPC---APRSGLPGRRSVDAAAGRGEGGRGREEGSR 211
           GRR RR  GPG    GS         C   AP S L  RR +      G GGRG   G R
Sbjct: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASAL--RRPLTQWDASGGGGRGSHSGPR 164

Query: 212 ARSVDVCAAARAG 224
           A +     ++RAG
Sbjct: 165 AGTPGGGRSSRAG 177



 Score = 28.9 bits (63), Expect = 3.7
 Identities = 34/106 (32%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 122 PRLSCSSSSWA---GECFWGPTPGCWLI-------AAGGFRRRCDPGRRGRRTGGPGRGS 171
           P L C+ S+ A    +   GP P   L        A+GG  R    G R    GG GR S
Sbjct: 116 PGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGG-GRSS 174

Query: 172 GRGTRRR-----CPCAPRSGLPGRRSVDAAAGRGEGGRGREEGSRA 212
             G RR+     CP   R G   R       G   GG G     RA
Sbjct: 175 RAGARRKTPLSLCPLKLRKGSSRRCQ---GLGSSWGGSGTPPPPRA 217


>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
           sapiens]
          Length = 755

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 53/216 (24%), Positives = 70/216 (32%), Gaps = 54/216 (25%)

Query: 8   STTKPGVRVPSPGRPA-RVTAGGRRWRGVTWGSSPSERSAGCASFGNENP---------- 56
           S  K G+    P RPA  V  G   W     G  P +R+ G A+   ++           
Sbjct: 173 SLCKSGLCCAHPVRPAGHVACGAGIWTRAQAG--PHKRAVGAAAGAAQSSGLFSKWVPCQ 230

Query: 57  ----HPNGGTERGNPAQV-------PCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYT 105
               HP G      P  +       PC  A      RQG  EA+                
Sbjct: 231 PLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQG--------------- 275

Query: 106 HTHTNNVSKKFSCDFVPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCD-PGRRGRRT 164
                  ++  S D +P L+C   S  G+C   PT G       G   +C  PG  G R+
Sbjct: 276 -------TRGGSADGIPELTCYQRSKCGKCGTVPTQG-----PPGTNPQCAMPGASGTRS 323

Query: 165 GGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRG 200
             P     R    +C      G PG  +  A  G G
Sbjct: 324 --PIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAG 357


>gi|239754584 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
           P  GC     G FR +  PG + RR G  GRG+G G   R   A    + G R V A
Sbjct: 38  PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91


>gi|239754578 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
           P  GC     G FR +  PG + RR G  GRG+G G   R   A    + G R V A
Sbjct: 38  PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91


>gi|239749143 PREDICTED: hypothetical protein XP_002346923 [Homo
           sapiens]
          Length = 148

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
           P  GC     G FR +  PG + RR G  GRG+G G   R   A    + G R V A
Sbjct: 38  PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91


>gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo
           sapiens]
          Length = 755

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 53/216 (24%), Positives = 70/216 (32%), Gaps = 54/216 (25%)

Query: 8   STTKPGVRVPSPGRPA-RVTAGGRRWRGVTWGSSPSERSAGCASFGNENP---------- 56
           S  K G+    P RPA  V  G   W     G  P +R+ G A+   ++           
Sbjct: 173 SLCKSGLCCAHPVRPAGHVACGAGIWTRAQAG--PHKRAVGAAAGAAQSSGLFSKWVPCQ 230

Query: 57  ----HPNGGTERGNPAQV-------PCVRARLRGQRRQGEEEAEAGWLDPRHQLILPCYT 105
               HP G      P  +       PC  A      RQG  EA+                
Sbjct: 231 PLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQG--------------- 275

Query: 106 HTHTNNVSKKFSCDFVPRLSCSSSSWAGECFWGPTPGCWLIAAGGFRRRCD-PGRRGRRT 164
                  ++  S D +P L+C   S  G+C   PT G       G   +C  PG  G R+
Sbjct: 276 -------TRGGSADGIPELTCYQRSKCGKCGTVPTQG-----PPGTNPQCAMPGASGTRS 323

Query: 165 GGPGRGSGRGTRRRCPCAPRSGLPGRRSVDAAAGRG 200
             P     R    +C      G PG  +  A  G G
Sbjct: 324 --PIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAG 357


>gi|239743187 PREDICTED: hypothetical protein XP_002342771 [Homo
           sapiens]
          Length = 148

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
           P  GC     G FR +  PG + RR G  GRG+G G   R   A    + G R V A
Sbjct: 38  PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91


>gi|239743182 PREDICTED: hypothetical protein XP_002342770 [Homo
           sapiens]
          Length = 148

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
           P  GC     G FR +  PG + RR G  GRG+G G   R   A    + G R V A
Sbjct: 38  PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91


>gi|239508856 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
           P  GC     G FR +  PG + RR G  GRG+G G   R   A    + G R V A
Sbjct: 38  PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91


>gi|239508847 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 139 PTPGCWLIAAGGFRRRCDPGRRGRRTGGPGRGSGRGTRRRCPCAPRSGLPGRRSVDA 195
           P  GC     G FR +  PG + RR G  GRG+G G   R   A    + G R V A
Sbjct: 38  PASGC--CGTGTFRTQRRPGDKSRRAGSRGRGAGPGRHDR-DSAHAGSMRGARLVPA 91


>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 294

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 35/100 (35%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 128 SSSWAGECFWGPTPGCWLIAAGGFRRRCDPGRRGRRTGGPGR--GSGRGTRRRCPCAPRS 185
           S++ AG     P P C L+   G+  R  PG      G P    G+ R +  R P  PR 
Sbjct: 14  SAAPAGSSLNSPDP-CQLLPGTGWMMR--PGEVAPAGGSPLAVGGAFRVSSPR-PFPPRP 69

Query: 186 GLPGRRSVDAAAGRGEGGRGRE--EGSRARSVDVCAAARA 223
             P RR        G G RGRE   GSR       A ARA
Sbjct: 70  ERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARA 109



 Score = 27.7 bits (60), Expect = 8.3
 Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 11  KPGVRVPSPGRPARVTAGGRRWRGVTWGSSPSERS----AGCASFGNENPHPNGGTERG- 65
           +PG   P+ G P  V    R      +   P   S    AGC + G   P   G   R  
Sbjct: 39  RPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHG---PGSRGRERRRG 95

Query: 66  --NPAQVPCVRARLRGQRRQGEEEAEAGWLDP 95
             +P   P  RAR RG+   G  +  +G   P
Sbjct: 96  SRDPPAGPVARARARGRSAPGSAQPASGAAGP 127


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,021,115
Number of Sequences: 37866
Number of extensions: 753703
Number of successful extensions: 4286
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 3799
Number of HSP's gapped (non-prelim): 746
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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