Guide to the Human Genome
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Name: LOC100287704 Sequence: fasta or formatted (148aa) NCBI GI: 239743182
Description:

PREDICTED: hypothetical protein XP_002342770

Not currently referenced in the text

Other entries for this name:
alt mRNA {148aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         21           1
 C cysteine            2.0          3           2
 D aspartate           2.0          3           1
 E glutamate           1.4          2           1
 F phenylalanine       2.0          3           1
 G glycine            12.8         19           2
 H histidine           3.4          5           1
 I isoleucine          1.4          2           1
 K lysine              0.7          1           1
 L leucine             4.1          6           1
 M methionine          4.1          6           1
 N asparagine          0.7          1           1
 P proline            12.2         18           2
 Q glutamine           2.7          4           1
 R arginine           16.2         24           2
 S serine              7.4         11           1
 T threonine           7.4         11           3
 V valine              4.7          7           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342770 
LOC100291195          1.000   PREDICTED: hypothetical protein XP_002346923 
LOC100287834          1.000   PREDICTED: hypothetical protein XP_002342771 
LOC100287834          1.000   PREDICTED: hypothetical protein 
LOC100287704          1.000   PREDICTED: hypothetical protein 
LOC100293719          0.993   PREDICTED: hypothetical protein 
LOC100293589          0.993   PREDICTED: hypothetical protein 
LOC730183             0.060   PREDICTED: hypothetical protein 
LOC100292143          0.049   PREDICTED: hypothetical protein 
LOC100132261          0.049   PREDICTED: similar to hCG2023245 
RANBP9                0.049   RAN binding protein 9 
GAS2L2                0.042   growth arrest-specific 2 like 2 
LOC283999             0.042   hypothetical protein LOC283999 
LOC100291624          0.039   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.039   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.039   PREDICTED: hypothetical protein XP_002342583 
FLJ31945              0.039   PREDICTED: hypothetical protein 
LOC100291634          0.039   PREDICTED: hypothetical protein XP_002346062 
LOC728650             0.039   PREDICTED: hypothetical protein 
LOC100287232          0.039   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.039   PREDICTED: hypothetical protein 
LOC100291096          0.035   PREDICTED: hypothetical protein XP_002346952 
KDM1                  0.035   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.035   amine oxidase (flavin containing) domain 2 isoform b...
LOC100130360          0.035   PREDICTED: hypothetical protein 
BAG1                  0.035   BCL2-associated athanogene isoform 1L 
LOC643355             0.032   PREDICTED: hypothetical protein 
LOC643355             0.032   PREDICTED: hypothetical protein 
MEX3D                 0.032   ring finger and KH domain containing 1 
LOC646034             0.032   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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