Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239743401

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743401 PREDICTED: hypothetical protein XP_002342828 [Homo
sapiens]
         (119 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754775 PREDICTED: hypothetical protein [Homo sapiens]           257   1e-69
gi|239749307 PREDICTED: hypothetical protein XP_002346986 [Homo ...   257   1e-69
gi|239743401 PREDICTED: hypothetical protein XP_002342828 [Homo ...   257   1e-69
gi|239509100 PREDICTED: hypothetical protein [Homo sapiens]           257   1e-69
gi|32528301 EPH receptor B4 precursor [Homo sapiens]                   32   0.14 
gi|94681038 phospholipase D4 [Homo sapiens]                            31   0.25 
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]    30   0.42 
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]    30   0.42 
gi|239757437 PREDICTED: hypothetical protein [Homo sapiens]            29   0.94 
gi|239751954 PREDICTED: hypothetical protein [Homo sapiens]            29   0.94 
gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo ...    29   0.94 
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               27   3.6  
gi|219842343 glutamate receptor, metabotropic 5 isoform a precur...    27   4.7  
gi|4504143 glutamate receptor, metabotropic 5 isoform b precurso...    27   4.7  
gi|118572606 hemicentin 1 [Homo sapiens]                               27   4.7  
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]           27   4.7  
gi|134031945 SCO-spondin [Homo sapiens]                                27   4.7  
gi|239757591 PREDICTED: hypothetical protein XP_002345493 [Homo ...    26   6.1  
gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens]                26   6.1  
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]         26   6.1  
gi|62243567 netrin receptor Unc5h1 [Homo sapiens]                      26   6.1  
gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo sa...    26   6.1  
gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchan...    26   7.9  
gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo ...    26   7.9  
gi|16445029 immunoglobulin superfamily, member 8 [Homo sapiens]        26   7.9  
gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domai...    26   7.9  
gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain...    26   7.9  
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]         26   7.9  
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]          26   7.9  

>gi|239754775 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score =  257 bits (657), Expect = 1e-69
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
           MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA
Sbjct: 1   MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60

Query: 61  TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
           TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV
Sbjct: 61  TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119


>gi|239749307 PREDICTED: hypothetical protein XP_002346986 [Homo
           sapiens]
          Length = 119

 Score =  257 bits (657), Expect = 1e-69
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
           MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA
Sbjct: 1   MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60

Query: 61  TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
           TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV
Sbjct: 61  TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119


>gi|239743401 PREDICTED: hypothetical protein XP_002342828 [Homo
           sapiens]
          Length = 119

 Score =  257 bits (657), Expect = 1e-69
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
           MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA
Sbjct: 1   MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60

Query: 61  TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
           TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV
Sbjct: 61  TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119


>gi|239509100 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score =  257 bits (657), Expect = 1e-69
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
           MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA
Sbjct: 1   MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60

Query: 61  TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
           TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV
Sbjct: 61  TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119


>gi|32528301 EPH receptor B4 precursor [Homo sapiens]
          Length = 987

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 14/80 (17%)

Query: 2   QGAFPILVSDVGVGSCH----QQHMNT-GSVACS--TGLVQGGAAPRGTVWPCSPPQQQP 54
           QG F  L    G GSC       H NT GS  C    G  +    PRG   PC+ P   P
Sbjct: 273 QGTFKPLS---GEGSCQPCPANSHSNTIGSAVCQCRVGYFRARTDPRGA--PCTTPPSAP 327

Query: 55  QDF--RVATAGCHMQWGGQL 72
           +    R+  +  H++W   L
Sbjct: 328 RSVVSRLNGSSLHLEWSAPL 347


>gi|94681038 phospholipase D4 [Homo sapiens]
          Length = 506

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 45 WPCSPPQQQPQDFRVAT----AGCHMQWGGQLLFVCQRPECPSPLWW 87
          WPCS P ++P D    T        + W G +  +C   + P P  W
Sbjct: 14 WPCSMPPRRPWDREAGTLQVLGALAVLWLGSVALICLLWQVPRPPTW 60


>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 6   PILVSDVGVGSCHQQHMNTGSVAC--------STGLVQGGAAPRGTVWPCSPPQQQPQDF 57
           P+     G    H + + T    C        STGL  GGA P G     +     P  F
Sbjct: 233 PLPCPQCGKSFIHPKRLQTHEAQCRRGASTRGSTGLGAGGAGPGGPAGVDASALPPPVGF 292

Query: 58  RVATAGCHMQWGGQLLFVC 76
           R          GG +L+VC
Sbjct: 293 RGGPEHVVKVVGGHVLYVC 311


>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 6   PILVSDVGVGSCHQQHMNTGSVAC--------STGLVQGGAAPRGTVWPCSPPQQQPQDF 57
           P+     G    H + + T    C        STGL  GGA P G     +     P  F
Sbjct: 233 PLPCPQCGKSFIHPKRLQTHEAQCRRGASTRGSTGLGAGGAGPGGPAGVDASALPPPVGF 292

Query: 58  RVATAGCHMQWGGQLLFVC 76
           R          GG +L+VC
Sbjct: 293 RGGPEHVVKVVGGHVLYVC 311


>gi|239757437 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 503

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 32  GLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPLWWLLQR 91
           G+ + G    G   P + P        ++  G H  WGG  L   +    PSPL   L  
Sbjct: 320 GMEKAGRQGEGKSKPAAGPS-------ISEPGIHRGWGGGPLRTGEDKPSPSPLRLYLVE 372

Query: 92  GSAARLSSSRSAVLCG 107
                L  SR  + CG
Sbjct: 373 LPQFALGDSRIFLFCG 388


>gi|239751954 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 503

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 32  GLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPLWWLLQR 91
           G+ + G    G   P + P        ++  G H  WGG  L   +    PSPL   L  
Sbjct: 320 GMEKAGRQGEGKSKPAAGPS-------ISEPGIHRGWGGGPLRTGEDKPSPSPLRLYLVE 372

Query: 92  GSAARLSSSRSAVLCG 107
                L  SR  + CG
Sbjct: 373 LPQFALGDSRIFLFCG 388


>gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo
           sapiens]
          Length = 503

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 32  GLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPLWWLLQR 91
           G+ + G    G   P + P        ++  G H  WGG  L   +    PSPL   L  
Sbjct: 320 GMEKAGRQGEGKSKPAAGPS-------ISEPGIHRGWGGGPLRTGEDKPSPSPLRLYLVE 372

Query: 92  GSAARLSSSRSAVLCG 107
                L  SR  + CG
Sbjct: 373 LPQFALGDSRIFLFCG 388


>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 361

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 15  GSCHQQHMNTG---SVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAG 63
           G C  + + TG   SVA   G  +GG  PR        P+ +P+    A +G
Sbjct: 267 GECQHERLGTGHGWSVAARPGARRGGRRPRSPSPARGEPEPEPERSGAARSG 318


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 23  NTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECP 82
           N  +   + G +  G  PRGTV P +P   +PQ         HM  GG      Q P  P
Sbjct: 271 NLTTATPALGSLPAGRGPRGTVAPATP--TKPQRTSPTNPHQHMAVGGP----AQTPLLP 324

Query: 83  SPL 85
           + L
Sbjct: 325 AKL 327


>gi|219842343 glutamate receptor, metabotropic 5 isoform a precursor
            [Homo sapiens]
          Length = 1212

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 5    FPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGC 64
            FP      G+G+      + G V  + G    GA P G   P SP       + VA A  
Sbjct: 952  FPKSTESRGLGAGAGAGGSAGGVGATGGAGCAGAGPGG---PESPDAGPKALYDVAEAEE 1008

Query: 65   HMQWGGQLLFVCQRPECPSPLWWLLQR-GSAAR 96
            H            RP  PSP+  L  R GSA+R
Sbjct: 1009 HFP-------APARPRSPSPISTLSHRAGSASR 1034


>gi|4504143 glutamate receptor, metabotropic 5 isoform b precursor
            [Homo sapiens]
          Length = 1180

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 5    FPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGC 64
            FP      G+G+      + G V  + G    GA P G   P SP       + VA A  
Sbjct: 920  FPKSTESRGLGAGAGAGGSAGGVGATGGAGCAGAGPGG---PESPDAGPKALYDVAEAEE 976

Query: 65   HMQWGGQLLFVCQRPECPSPLWWLLQR-GSAAR 96
            H            RP  PSP+  L  R GSA+R
Sbjct: 977  HFP-------APARPRSPSPISTLSHRAGSASR 1002


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 23   NTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECP 82
            + G   C      G A    T+    PP  QPQ   +     H+     +L  C+    P
Sbjct: 3961 HAGRYTCVARNAAGSAHRHVTLHVHEPPVIQPQPSEL-----HVILNNPILLPCEATGTP 4015

Query: 83   SPLWWLLQRGSAARLSSSRSAVLCGG 108
            SP     + G     S    AVL  G
Sbjct: 4016 SPFITWQKEGINVNTSGRNHAVLPSG 4041


>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
          Length = 3565

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 56   DFRVATAGCHMQWGGQLLFVCQRPECPS 83
            D  VA AG H+++    L  CQ P  PS
Sbjct: 1896 DISVAAAGFHLEYKTVGLAACQEPALPS 1923


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 78   RPECPSPLWW-LLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
            R +CP  L   L   G+ ARL S  +     G  +C   R PV
Sbjct: 2942 RSQCPCQLHGQLYASGAMARLDSCNNCTCVSGKMACTSERCPV 2984


>gi|239757591 PREDICTED: hypothetical protein XP_002345493 [Homo
           sapiens]
          Length = 598

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 36  GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGG 70
           G A PRG V    PP  +P+    A  G ++  GG
Sbjct: 521 GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGG 555


>gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens]
          Length = 450

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 38  AAPRGTVWPCSPPQQQPQDFRV 59
           A P      CSPP QQPQ  RV
Sbjct: 314 AVPVSPASACSPPLQQPQGSRV 335


>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
          Length = 1303

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 22/51 (43%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 24   TGSVACSTGLVQGGA-APRGTVWP---CSPPQQQPQDFRVATAGCHMQWGG 70
            T S A S     G A AP  T  P    SPP   P D RV  AG   Q GG
Sbjct: 1086 TDSTASSRAAKPGPAEAPSPTASPSGDASPPATAPYDPRVLAAGGLGQGGG 1136


>gi|62243567 netrin receptor Unc5h1 [Homo sapiens]
          Length = 842

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 33  LVQGGAAPRGTVWPCSPPQQQPQDFRVATAGC 64
           L+   A PRG ++       +P+D R+  AGC
Sbjct: 464 LIPPDAIPRGKIYEIYLTLHKPEDVRLPLAGC 495


>gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo
          sapiens]
          Length = 1194

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 13/50 (26%)

Query: 36 GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPL 85
          GG  PR  V P   PQ++P+             GGQL     RP C   L
Sbjct: 51 GGGRPRQQVSPPRSPQREPR-------------GGQLRTPRMRPSCSRSL 87


>gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchange
           factor 4 [Homo sapiens]
          Length = 368

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 11  DVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAG 63
           D+G  S     ++ GS + S+G+V GG    G +          +  R ATAG
Sbjct: 235 DLGTSSSSSAGLSPGSDSDSSGVVCGGRGGNGGMRGAVSRSWSLESLRSATAG 287


>gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo
           sapiens]
          Length = 424

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 46  PCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGS 93
           PC PPQ      ++++A   + W         RP  P  L W++ R S
Sbjct: 176 PC-PPQPNQLAPQLSSAPAQLVWAETHSLALPRPNGPESLTWVIFRKS 222


>gi|16445029 immunoglobulin superfamily, member 8 [Homo sapiens]
          Length = 613

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 12/66 (18%)

Query: 11  DVGVGSCHQQHMNTGSVACSTGLVQ------------GGAAPRGTVWPCSPPQQQPQDFR 58
           D G+  CH    +T  +   +G V+                PRG   P SPP+    + +
Sbjct: 121 DAGIYECHTPSTDTRYLGSYSGKVELRVLPDVLQVSAAPPGPRGRQAPTSPPRMTVHEGQ 180

Query: 59  VATAGC 64
               GC
Sbjct: 181 ELALGC 186


>gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
           isoform b [Homo sapiens]
          Length = 894

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 36  GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFV----CQRPECPSPLWWLLQR 91
           G A P+G    C PP       R    GC     G    V     + PE P  L      
Sbjct: 731 GAATPQGESEDCPPPLPVKNSSRTLVQGCARHASGDRSEVSSLSSEAPETPESL------ 784

Query: 92  GSAARLSSSRSAVLCGGNS 110
           GS A  SS  S +  G  S
Sbjct: 785 GSPASSSSLMSPLEPGDPS 803


>gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
           isoform a [Homo sapiens]
          Length = 903

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 36  GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFV----CQRPECPSPLWWLLQR 91
           G A P+G    C PP       R    GC     G    V     + PE P  L      
Sbjct: 740 GAATPQGESEDCPPPLPVKNSSRTLVQGCARHASGDRSEVSSLSSEAPETPESL------ 793

Query: 92  GSAARLSSSRSAVLCGGNS 110
           GS A  SS  S +  G  S
Sbjct: 794 GSPASSSSLMSPLEPGDPS 812


>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
          Length = 973

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 36  GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFV 75
           GG  P       SP + +P   R+  +G  +QW   L+ +
Sbjct: 714 GGRGPAAPASAGSPERSRPPGSRLGVSGSVLQWDTPLIVI 753


>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
          Length = 1070

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 36  GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFV 75
           GG  P       SP + +P   R+  +G  +QW   L+ +
Sbjct: 714 GGRGPAAPASAGSPERSRPPGSRLGVSGSVLQWDTPLIVI 753


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.133    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,485,366
Number of Sequences: 37866
Number of extensions: 262657
Number of successful extensions: 741
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 36
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press