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Search of human proteins with 239743401
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743401 PREDICTED: hypothetical protein XP_002342828 [Homo
sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754775 PREDICTED: hypothetical protein [Homo sapiens] 257 1e-69
gi|239749307 PREDICTED: hypothetical protein XP_002346986 [Homo ... 257 1e-69
gi|239743401 PREDICTED: hypothetical protein XP_002342828 [Homo ... 257 1e-69
gi|239509100 PREDICTED: hypothetical protein [Homo sapiens] 257 1e-69
gi|32528301 EPH receptor B4 precursor [Homo sapiens] 32 0.14
gi|94681038 phospholipase D4 [Homo sapiens] 31 0.25
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 30 0.42
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 30 0.42
gi|239757437 PREDICTED: hypothetical protein [Homo sapiens] 29 0.94
gi|239751954 PREDICTED: hypothetical protein [Homo sapiens] 29 0.94
gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo ... 29 0.94
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 27 3.6
gi|219842343 glutamate receptor, metabotropic 5 isoform a precur... 27 4.7
gi|4504143 glutamate receptor, metabotropic 5 isoform b precurso... 27 4.7
gi|118572606 hemicentin 1 [Homo sapiens] 27 4.7
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 27 4.7
gi|134031945 SCO-spondin [Homo sapiens] 27 4.7
gi|239757591 PREDICTED: hypothetical protein XP_002345493 [Homo ... 26 6.1
gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens] 26 6.1
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 26 6.1
gi|62243567 netrin receptor Unc5h1 [Homo sapiens] 26 6.1
gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo sa... 26 6.1
gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchan... 26 7.9
gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo ... 26 7.9
gi|16445029 immunoglobulin superfamily, member 8 [Homo sapiens] 26 7.9
gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domai... 26 7.9
gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain... 26 7.9
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens] 26 7.9
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens] 26 7.9
>gi|239754775 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 257 bits (657), Expect = 1e-69
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA
Sbjct: 1 MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
Query: 61 TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV
Sbjct: 61 TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
>gi|239749307 PREDICTED: hypothetical protein XP_002346986 [Homo
sapiens]
Length = 119
Score = 257 bits (657), Expect = 1e-69
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA
Sbjct: 1 MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
Query: 61 TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV
Sbjct: 61 TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
>gi|239743401 PREDICTED: hypothetical protein XP_002342828 [Homo
sapiens]
Length = 119
Score = 257 bits (657), Expect = 1e-69
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA
Sbjct: 1 MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
Query: 61 TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV
Sbjct: 61 TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
>gi|239509100 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 257 bits (657), Expect = 1e-69
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA
Sbjct: 1 MQGAFPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVA 60
Query: 61 TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV
Sbjct: 61 TAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
>gi|32528301 EPH receptor B4 precursor [Homo sapiens]
Length = 987
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 2 QGAFPILVSDVGVGSCH----QQHMNT-GSVACS--TGLVQGGAAPRGTVWPCSPPQQQP 54
QG F L G GSC H NT GS C G + PRG PC+ P P
Sbjct: 273 QGTFKPLS---GEGSCQPCPANSHSNTIGSAVCQCRVGYFRARTDPRGA--PCTTPPSAP 327
Query: 55 QDF--RVATAGCHMQWGGQL 72
+ R+ + H++W L
Sbjct: 328 RSVVSRLNGSSLHLEWSAPL 347
>gi|94681038 phospholipase D4 [Homo sapiens]
Length = 506
Score = 30.8 bits (68), Expect = 0.25
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 45 WPCSPPQQQPQDFRVAT----AGCHMQWGGQLLFVCQRPECPSPLWW 87
WPCS P ++P D T + W G + +C + P P W
Sbjct: 14 WPCSMPPRRPWDREAGTLQVLGALAVLWLGSVALICLLWQVPRPPTW 60
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 6 PILVSDVGVGSCHQQHMNTGSVAC--------STGLVQGGAAPRGTVWPCSPPQQQPQDF 57
P+ G H + + T C STGL GGA P G + P F
Sbjct: 233 PLPCPQCGKSFIHPKRLQTHEAQCRRGASTRGSTGLGAGGAGPGGPAGVDASALPPPVGF 292
Query: 58 RVATAGCHMQWGGQLLFVC 76
R GG +L+VC
Sbjct: 293 RGGPEHVVKVVGGHVLYVC 311
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 6 PILVSDVGVGSCHQQHMNTGSVAC--------STGLVQGGAAPRGTVWPCSPPQQQPQDF 57
P+ G H + + T C STGL GGA P G + P F
Sbjct: 233 PLPCPQCGKSFIHPKRLQTHEAQCRRGASTRGSTGLGAGGAGPGGPAGVDASALPPPVGF 292
Query: 58 RVATAGCHMQWGGQLLFVC 76
R GG +L+VC
Sbjct: 293 RGGPEHVVKVVGGHVLYVC 311
>gi|239757437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 28.9 bits (63), Expect = 0.94
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 32 GLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPLWWLLQR 91
G+ + G G P + P ++ G H WGG L + PSPL L
Sbjct: 320 GMEKAGRQGEGKSKPAAGPS-------ISEPGIHRGWGGGPLRTGEDKPSPSPLRLYLVE 372
Query: 92 GSAARLSSSRSAVLCG 107
L SR + CG
Sbjct: 373 LPQFALGDSRIFLFCG 388
>gi|239751954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 28.9 bits (63), Expect = 0.94
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 32 GLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPLWWLLQR 91
G+ + G G P + P ++ G H WGG L + PSPL L
Sbjct: 320 GMEKAGRQGEGKSKPAAGPS-------ISEPGIHRGWGGGPLRTGEDKPSPSPLRLYLVE 372
Query: 92 GSAARLSSSRSAVLCG 107
L SR + CG
Sbjct: 373 LPQFALGDSRIFLFCG 388
>gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo
sapiens]
Length = 503
Score = 28.9 bits (63), Expect = 0.94
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 32 GLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPLWWLLQR 91
G+ + G G P + P ++ G H WGG L + PSPL L
Sbjct: 320 GMEKAGRQGEGKSKPAAGPS-------ISEPGIHRGWGGGPLRTGEDKPSPSPLRLYLVE 372
Query: 92 GSAARLSSSRSAVLCG 107
L SR + CG
Sbjct: 373 LPQFALGDSRIFLFCG 388
>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 361
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 15 GSCHQQHMNTG---SVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAG 63
G C + + TG SVA G +GG PR P+ +P+ A +G
Sbjct: 267 GECQHERLGTGHGWSVAARPGARRGGRRPRSPSPARGEPEPEPERSGAARSG 318
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 23 NTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECP 82
N + + G + G PRGTV P +P +PQ HM GG Q P P
Sbjct: 271 NLTTATPALGSLPAGRGPRGTVAPATP--TKPQRTSPTNPHQHMAVGGP----AQTPLLP 324
Query: 83 SPL 85
+ L
Sbjct: 325 AKL 327
>gi|219842343 glutamate receptor, metabotropic 5 isoform a precursor
[Homo sapiens]
Length = 1212
Score = 26.6 bits (57), Expect = 4.7
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 5 FPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGC 64
FP G+G+ + G V + G GA P G P SP + VA A
Sbjct: 952 FPKSTESRGLGAGAGAGGSAGGVGATGGAGCAGAGPGG---PESPDAGPKALYDVAEAEE 1008
Query: 65 HMQWGGQLLFVCQRPECPSPLWWLLQR-GSAAR 96
H RP PSP+ L R GSA+R
Sbjct: 1009 HFP-------APARPRSPSPISTLSHRAGSASR 1034
>gi|4504143 glutamate receptor, metabotropic 5 isoform b precursor
[Homo sapiens]
Length = 1180
Score = 26.6 bits (57), Expect = 4.7
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 5 FPILVSDVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGC 64
FP G+G+ + G V + G GA P G P SP + VA A
Sbjct: 920 FPKSTESRGLGAGAGAGGSAGGVGATGGAGCAGAGPGG---PESPDAGPKALYDVAEAEE 976
Query: 65 HMQWGGQLLFVCQRPECPSPLWWLLQR-GSAAR 96
H RP PSP+ L R GSA+R
Sbjct: 977 HFP-------APARPRSPSPISTLSHRAGSASR 1002
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 26.6 bits (57), Expect = 4.7
Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 23 NTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECP 82
+ G C G A T+ PP QPQ + H+ +L C+ P
Sbjct: 3961 HAGRYTCVARNAAGSAHRHVTLHVHEPPVIQPQPSEL-----HVILNNPILLPCEATGTP 4015
Query: 83 SPLWWLLQRGSAARLSSSRSAVLCGG 108
SP + G S AVL G
Sbjct: 4016 SPFITWQKEGINVNTSGRNHAVLPSG 4041
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 26.6 bits (57), Expect = 4.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 56 DFRVATAGCHMQWGGQLLFVCQRPECPS 83
D VA AG H+++ L CQ P PS
Sbjct: 1896 DISVAAAGFHLEYKTVGLAACQEPALPS 1923
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 26.6 bits (57), Expect = 4.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 78 RPECPSPLWW-LLQRGSAARLSSSRSAVLCGGNSSCNLARSPV 119
R +CP L L G+ ARL S + G +C R PV
Sbjct: 2942 RSQCPCQLHGQLYASGAMARLDSCNNCTCVSGKMACTSERCPV 2984
>gi|239757591 PREDICTED: hypothetical protein XP_002345493 [Homo
sapiens]
Length = 598
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 36 GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGG 70
G A PRG V PP +P+ A G ++ GG
Sbjct: 521 GDAKPRGGVSGQPPPSNEPEKPAAAAGGPYLLRGG 555
>gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens]
Length = 450
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 38 AAPRGTVWPCSPPQQQPQDFRV 59
A P CSPP QQPQ RV
Sbjct: 314 AVPVSPASACSPPLQQPQGSRV 335
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/51 (43%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 24 TGSVACSTGLVQGGA-APRGTVWP---CSPPQQQPQDFRVATAGCHMQWGG 70
T S A S G A AP T P SPP P D RV AG Q GG
Sbjct: 1086 TDSTASSRAAKPGPAEAPSPTASPSGDASPPATAPYDPRVLAAGGLGQGGG 1136
>gi|62243567 netrin receptor Unc5h1 [Homo sapiens]
Length = 842
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 33 LVQGGAAPRGTVWPCSPPQQQPQDFRVATAGC 64
L+ A PRG ++ +P+D R+ AGC
Sbjct: 464 LIPPDAIPRGKIYEIYLTLHKPEDVRLPLAGC 495
>gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo
sapiens]
Length = 1194
Score = 26.2 bits (56), Expect = 6.1
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 13/50 (26%)
Query: 36 GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPL 85
GG PR V P PQ++P+ GGQL RP C L
Sbjct: 51 GGGRPRQQVSPPRSPQREPR-------------GGQLRTPRMRPSCSRSL 87
>gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchange
factor 4 [Homo sapiens]
Length = 368
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 11 DVGVGSCHQQHMNTGSVACSTGLVQGGAAPRGTVWPCSPPQQQPQDFRVATAG 63
D+G S ++ GS + S+G+V GG G + + R ATAG
Sbjct: 235 DLGTSSSSSAGLSPGSDSDSSGVVCGGRGGNGGMRGAVSRSWSLESLRSATAG 287
>gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo
sapiens]
Length = 424
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 46 PCSPPQQQPQDFRVATAGCHMQWGGQLLFVCQRPECPSPLWWLLQRGS 93
PC PPQ ++++A + W RP P L W++ R S
Sbjct: 176 PC-PPQPNQLAPQLSSAPAQLVWAETHSLALPRPNGPESLTWVIFRKS 222
>gi|16445029 immunoglobulin superfamily, member 8 [Homo sapiens]
Length = 613
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 11 DVGVGSCHQQHMNTGSVACSTGLVQ------------GGAAPRGTVWPCSPPQQQPQDFR 58
D G+ CH +T + +G V+ PRG P SPP+ + +
Sbjct: 121 DAGIYECHTPSTDTRYLGSYSGKVELRVLPDVLQVSAAPPGPRGRQAPTSPPRMTVHEGQ 180
Query: 59 VATAGC 64
GC
Sbjct: 181 ELALGC 186
>gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform b [Homo sapiens]
Length = 894
Score = 25.8 bits (55), Expect = 7.9
Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 36 GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFV----CQRPECPSPLWWLLQR 91
G A P+G C PP R GC G V + PE P L
Sbjct: 731 GAATPQGESEDCPPPLPVKNSSRTLVQGCARHASGDRSEVSSLSSEAPETPESL------ 784
Query: 92 GSAARLSSSRSAVLCGGNS 110
GS A SS S + G S
Sbjct: 785 GSPASSSSLMSPLEPGDPS 803
>gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform a [Homo sapiens]
Length = 903
Score = 25.8 bits (55), Expect = 7.9
Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 36 GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFV----CQRPECPSPLWWLLQR 91
G A P+G C PP R GC G V + PE P L
Sbjct: 740 GAATPQGESEDCPPPLPVKNSSRTLVQGCARHASGDRSEVSSLSSEAPETPESL------ 793
Query: 92 GSAARLSSSRSAVLCGGNS 110
GS A SS S + G S
Sbjct: 794 GSPASSSSLMSPLEPGDPS 812
>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
Length = 973
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 36 GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFV 75
GG P SP + +P R+ +G +QW L+ +
Sbjct: 714 GGRGPAAPASAGSPERSRPPGSRLGVSGSVLQWDTPLIVI 753
>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
Length = 1070
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 36 GGAAPRGTVWPCSPPQQQPQDFRVATAGCHMQWGGQLLFV 75
GG P SP + +P R+ +G +QW L+ +
Sbjct: 714 GGRGPAAPASAGSPERSRPPGSRLGVSGSVLQWDTPLIVI 753
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,485,366
Number of Sequences: 37866
Number of extensions: 262657
Number of successful extensions: 741
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 36
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.