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Search of human proteins with 239743305
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743305 PREDICTED: hypothetical protein XP_002342789 [Homo
sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743305 PREDICTED: hypothetical protein XP_002342789 [Homo ... 360 e-100
gi|239508988 PREDICTED: similar to HSPC047 protein [Homo sapiens] 360 e-100
gi|239743313 PREDICTED: hypothetical protein XP_002342790 [Homo ... 352 7e-98
gi|169170602 PREDICTED: hypothetical protein [Homo sapiens] 352 7e-98
gi|239743129 PREDICTED: hypothetical protein XP_002342758 [Homo ... 346 5e-96
gi|239508786 PREDICTED: similar to HSPC047 protein [Homo sapiens] 346 5e-96
gi|83367077 mucin 16 [Homo sapiens] 29 2.3
gi|150421681 ATPase, class VI, type 11A isoform b [Homo sapiens] 29 2.3
gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens] 29 2.3
gi|224589129 karyopherin 7 [Homo sapiens] 28 3.0
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 28 3.9
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 28 3.9
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 28 5.1
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens] 28 5.1
gi|46409304 glutamate-rich 1 [Homo sapiens] 28 5.1
gi|38348336 inter-alpha (globulin) inhibitor H5-like [Homo sapiens] 27 6.7
gi|167555110 kinesin family member C1 [Homo sapiens] 27 6.7
gi|62122917 filaggrin family member 2 [Homo sapiens] 27 8.7
gi|169217460 PREDICTED: similar to Mucin-6, partial [Homo sapiens] 27 8.7
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 27 8.7
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 27 8.7
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 27 8.7
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 27 8.7
>gi|239743305 PREDICTED: hypothetical protein XP_002342789 [Homo
sapiens]
Length = 172
Score = 360 bits (925), Expect = e-100
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
Query: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG
Sbjct: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
Query: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRYR 172
PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRYR
Sbjct: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRYR 172
>gi|239508988 PREDICTED: similar to HSPC047 protein [Homo sapiens]
Length = 172
Score = 360 bits (925), Expect = e-100
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
Query: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG
Sbjct: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
Query: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRYR 172
PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRYR
Sbjct: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRYR 172
>gi|239743313 PREDICTED: hypothetical protein XP_002342790 [Homo
sapiens]
Length = 172
Score = 352 bits (904), Expect = 7e-98
Identities = 169/172 (98%), Positives = 169/172 (98%)
Query: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
Query: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLG LQTGKPQALLASANPLSRSMG
Sbjct: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGALQTGKPQALLASANPLSRSMG 120
Query: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRYR 172
PPDHHLTTLILISL TPFPGLLSSGCFSLTLTL LDHGGLGNRCLPRCWRYR
Sbjct: 121 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGGLGNRCLPRCWRYR 172
>gi|169170602 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 352 bits (904), Expect = 7e-98
Identities = 169/172 (98%), Positives = 169/172 (98%)
Query: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
Query: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLG LQTGKPQALLASANPLSRSMG
Sbjct: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGALQTGKPQALLASANPLSRSMG 120
Query: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRYR 172
PPDHHLTTLILISL TPFPGLLSSGCFSLTLTL LDHGGLGNRCLPRCWRYR
Sbjct: 121 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGGLGNRCLPRCWRYR 172
>gi|239743129 PREDICTED: hypothetical protein XP_002342758 [Homo
sapiens]
Length = 182
Score = 346 bits (888), Expect = 5e-96
Identities = 166/171 (97%), Positives = 167/171 (97%)
Query: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
MTQ QGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 11 MTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 70
Query: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPL+RSMG
Sbjct: 71 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLNRSMG 130
Query: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRY 171
PPDHHLTTLILISL TPFPGLLSSGCFSLTLTL LDHG LGNRCLPRCWRY
Sbjct: 131 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWRY 181
>gi|239508786 PREDICTED: similar to HSPC047 protein [Homo sapiens]
Length = 182
Score = 346 bits (888), Expect = 5e-96
Identities = 166/171 (97%), Positives = 167/171 (97%)
Query: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
MTQ QGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 11 MTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 70
Query: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPL+RSMG
Sbjct: 71 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLNRSMG 130
Query: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRY 171
PPDHHLTTLILISL TPFPGLLSSGCFSLTLTL LDHG LGNRCLPRCWRY
Sbjct: 131 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWRY 181
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 28.9 bits (63), Expect = 2.3
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 102 TGKPQALLASANPLSRS-MGPPDHHLTTLILISLYTPFPGLLSSGCFSLT 150
TG P+A+ S +P SR+ GP D L+T I SL + P SS F+ T
Sbjct: 10292 TGVPRAISGSGSPFSRTESGPGDATLST-IAESLPSSTPVPFSSSTFTTT 10340
>gi|150421681 ATPase, class VI, type 11A isoform b [Homo sapiens]
Length = 1191
Score = 28.9 bits (63), Expect = 2.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 44 IVYLCISLNFSRIKKLKKYTWPG-PTRDSP 72
IVYLCI ++ + I + KY W P RD P
Sbjct: 298 IVYLCILISKALINTVLKYMWQSEPFRDEP 327
>gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens]
Length = 1134
Score = 28.9 bits (63), Expect = 2.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 44 IVYLCISLNFSRIKKLKKYTWPG-PTRDSP 72
IVYLCI ++ + I + KY W P RD P
Sbjct: 298 IVYLCILISKALINTVLKYMWQSEPFRDEP 327
>gi|224589129 karyopherin 7 [Homo sapiens]
Length = 516
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 100 LQTGKPQALLASANPLSRSMGPPDHHLTTLILISLYTPFPGLLSSGCFSL 149
LQ KP +A LS P HH+ L+ + P LL +G F +
Sbjct: 334 LQHNKPSIQKEAAWALSNVAAGPCHHIQQLLAYDVLPPLVALLKNGEFKV 383
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 28.1 bits (61), Expect = 3.9
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 41 LSCIVYLCISLNFSRIKKLKKYTWPGP-TRDSPNASLQPGRAKF-AFSHASHTPLHSQLG 98
LSC+++ C L FS +K K T P T+ A+L P + F A ++ TP + G
Sbjct: 7 LSCLIFSC--LTFSWLKIWGKMTDSKPITKSKSEANLIPSQEPFPASDNSGETPQRNGEG 64
Query: 99 ELQTGKPQALLASANPLSRSMGPPD 123
P + A P S GP D
Sbjct: 65 HTLPKTP----SQAEPASHK-GPKD 84
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 28.1 bits (61), Expect = 3.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 91 TPLHSQLGELQTGKPQALLASANPLSRSMGPPDH 124
+P S G LQTGKP A + +M PP H
Sbjct: 477 SPRGSPDGSLQTGKPSAPKKLKLDVGEAMAPPSH 510
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 27.7 bits (60), Expect = 5.1
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 15/59 (25%)
Query: 11 VEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLKKYTWPGPTR 69
+E E++G RG L+ CGVCGG+L+ SL S I++ + PG TR
Sbjct: 424 LEYLMELDGGRRG---LV-----CGVCGGALA-------SLKMSTIERHIRRRHPGSTR 467
>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
Length = 463
Score = 27.7 bits (60), Expect = 5.1
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 66 GPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKP-QALLASANPLSRSMGPPDH 124
G T SP+A+L G+ + + TP+ + G P AL + ++ +MGPP
Sbjct: 23 GSTSMSPSAALSTGKPMDSHPSYTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSG 82
Query: 125 HLTTLILISLYTP 137
L I+L P
Sbjct: 83 ALAAPPGINLVAP 95
>gi|46409304 glutamate-rich 1 [Homo sapiens]
Length = 443
Score = 27.7 bits (60), Expect = 5.1
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 51 LNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLA 110
LNF + + + Y + G +RD+ +A+L + ASH+ L S + L K LL
Sbjct: 341 LNFLKSTQ-EMYFYDGVSRDAASAALADAAEELLDRLASHSMLPSDVSILYHMKTLLLLQ 399
Query: 111 SANPLSRSMG--------PPDH 124
L ++ PPDH
Sbjct: 400 DTERLKHALEMFPEHCTMPPDH 421
>gi|38348336 inter-alpha (globulin) inhibitor H5-like [Homo sapiens]
Length = 1313
Score = 27.3 bits (59), Expect = 6.7
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 87 HASHTPLHSQLGELQTGKPQALLASANPLSRSMGPPDHHLTTLILISLYTPFPGLLSSGC 146
H TPL + + P++L N +S S GP T+++ L PF L G
Sbjct: 880 HMPQTPLPPRPDRPRPPLPESLSTFPNTISSSTGPSSTTTTSVLGEPLPMPFTPTLPPGR 939
Query: 147 F 147
F
Sbjct: 940 F 940
>gi|167555110 kinesin family member C1 [Homo sapiens]
Length = 673
Score = 27.3 bits (59), Expect = 6.7
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 4 RQGSGGEVEMRQEVEGRGRGSHELIITDKR 33
R+G GGE E+R+ G GS EL +T+ R
Sbjct: 478 RKGQGGECEIRR----AGPGSEELTVTNAR 503
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 26.9 bits (58), Expect = 8.7
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 66 GPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMGPPDHH 125
G + + S GR + + S +S + +HS + TG S + S S+ P H
Sbjct: 1634 GHGQSTQRGSRTTGRQRSSHSESSDSEVHSGVSHTHTGHTHGQAGSQHGQSESIVPERHG 1693
Query: 126 LT 127
T
Sbjct: 1694 TT 1695
>gi|169217460 PREDICTED: similar to Mucin-6, partial [Homo sapiens]
Length = 350
Score = 26.9 bits (58), Expect = 8.7
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 66 GPTRDSPNASLQPGRAKFAFSHAS----HTPLHSQLGELQTGKPQALLASA-----NPLS 116
G T +P +L A S + T LHS T P+A S NP S
Sbjct: 239 GSTHTAPTRTLTTSGTSQALSSLNTAKTSTSLHSHTSS--THHPEATSTSTTNITPNPTS 296
Query: 117 RSMGPPDHHLTTLILISLYTPF 138
G P H T+ L TPF
Sbjct: 297 TGTGTPVAHTTSATSSRLTTPF 318
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 26.9 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 65 PGPTRDSPNASLQPGRAKFAFSHASHTPLHSQ 96
P P R +P+AS P RA F SH S+
Sbjct: 36 PSPARPAPSASPSPSRAAGPFLPPSHASTSSR 67
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 26.9 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 65 PGPTRDSPNASLQPGRAKFAFSHASHTPLHSQ 96
P P R +P+AS P RA F SH S+
Sbjct: 36 PSPARPAPSASPSPSRAAGPFLPPSHASTSSR 67
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 26.9 bits (58), Expect = 8.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 50 SLNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQ 101
SL+ SR K T P P P+ S P + F S +H+PLHS LQ
Sbjct: 403 SLSSSRSSTPAK-TQPAP----PHISHHPSASPFPLSLPNHSPLHSFTPTLQ 449
>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
sapiens]
Length = 1259
Score = 26.9 bits (58), Expect = 8.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 50 SLNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQ 101
SL+ SR K T P P P+ S P + F S +H+PLHS LQ
Sbjct: 403 SLSSSRSSTPAK-TQPAP----PHISHHPSASPFPLSLPNHSPLHSFTPTLQ 449
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,116,480
Number of Sequences: 37866
Number of extensions: 393138
Number of successful extensions: 961
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 27
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.