Guide to the Human Genome
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Name: LOC100286937 Sequence: fasta or formatted (172aa) NCBI GI: 239743305
Description:

PREDICTED: hypothetical protein XP_002342789

Not currently referenced in the text

Other entries for this name:
alt mRNA {172aa} PREDICTED: similar to HSPC047 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          7           1
 C cysteine            4.1          7           1
 D aspartate           2.3          4           1
 E glutamate           3.5          6           1
 F phenylalanine       2.9          5           1
 G glycine            11.0         19           2
 H histidine           4.1          7           2
 I isoleucine          4.1          7           2
 K lysine              4.1          7           2
 L leucine            14.0         24           2
 M methionine          1.7          3           1
 N asparagine          2.3          4           1
 P proline             7.0         12           2
 Q glutamine           4.7          8           1
 R arginine            7.6         13           1
 S serine             10.5         18           2
 T threonine           6.4         11           2
 V valine              2.3          4           1
 W tryptophan          1.2          2           1
 Y tyrosine            2.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342789 
LOC100286937          1.000   PREDICTED: similar to HSPC047 protein 
LOC100286974          0.976   PREDICTED: hypothetical protein XP_002342790 
LOC100134584          0.976   PREDICTED: hypothetical protein 
LOC100287164          0.958   PREDICTED: hypothetical protein XP_002342758 
LOC100287164          0.958   PREDICTED: similar to HSPC047 protein 
MUC16                 0.012   mucin 16 
ATP11A                0.012   ATPase, class VI, type 11A isoform b 
ATP11A                0.012   ATPase, class VI, type 11A isoform a 
KPNA7                 0.009   karyopherin 7 
ACACB                 0.009   acetyl-Coenzyme A carboxylase beta 
PELP1                 0.009   proline, glutamic acid and leucine rich protein 1 [...
LOC65998              0.009   hypothetical protein LOC65998 
RXRG                  0.009   retinoid X receptor, gamma isoform a 
ERICH1                0.009   glutamate-rich 1 
ITIH5L                0.006   inter-alpha (globulin) inhibitor H5-like 
KIFC1                 0.006   kinesin family member C1 
FLG2                  0.006   filaggrin family member 2 
LOC100133761          0.006   PREDICTED: similar to Mucin-6, partial 
LOC100130506          0.006   PREDICTED: hypothetical protein 
LOC100288911          0.006   PREDICTED: hypothetical protein XP_002342241 
AUTS2                 0.006   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.006   autism susceptibility candidate 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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