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Search of human proteins with 239743042
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ... 337 3e-93
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ... 337 3e-93
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens] 287 3e-78
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 43 1e-04
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 43 1e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 41 5e-04
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 40 0.001
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 39 0.001
gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo ... 39 0.001
gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo ... 39 0.001
gi|153792074 proline rich 12 [Homo sapiens] 39 0.002
gi|169202970 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169203510 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169202296 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|122937211 KIAA0368 protein [Homo sapiens] 38 0.003
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 37 0.005
gi|223890203 zinc finger and BTB domain containing 22 [Homo sapi... 37 0.005
gi|223890199 zinc finger and BTB domain containing 22 [Homo sapi... 37 0.005
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 37 0.007
gi|194272140 dendrin [Homo sapiens] 37 0.007
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 37 0.007
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 37 0.009
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 37 0.009
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 37 0.009
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 37 0.009
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 36 0.012
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens] 36 0.016
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 36 0.016
>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
sapiens]
Length = 159
Score = 337 bits (863), Expect = 3e-93
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MTNGPLRFGAAGFRVVIIGLVQEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLS 60
MTNGPLRFGAAGFRVVIIGLVQEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLS
Sbjct: 1 MTNGPLRFGAAGFRVVIIGLVQEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLS 60
Query: 61 GPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQ 120
GPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQ
Sbjct: 61 GPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQ 120
Query: 121 CCWGHRRRSAPEPVPAVRTRVHGASRRLVCRWDCPFPPA 159
CCWGHRRRSAPEPVPAVRTRVHGASRRLVCRWDCPFPPA
Sbjct: 121 CCWGHRRRSAPEPVPAVRTRVHGASRRLVCRWDCPFPPA 159
>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
sapiens]
Length = 159
Score = 337 bits (863), Expect = 3e-93
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MTNGPLRFGAAGFRVVIIGLVQEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLS 60
MTNGPLRFGAAGFRVVIIGLVQEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLS
Sbjct: 1 MTNGPLRFGAAGFRVVIIGLVQEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLS 60
Query: 61 GPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQ 120
GPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQ
Sbjct: 61 GPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQ 120
Query: 121 CCWGHRRRSAPEPVPAVRTRVHGASRRLVCRWDCPFPPA 159
CCWGHRRRSAPEPVPAVRTRVHGASRRLVCRWDCPFPPA
Sbjct: 121 CCWGHRRRSAPEPVPAVRTRVHGASRRLVCRWDCPFPPA 159
>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 287 bits (734), Expect = 3e-78
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 27 EQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGP 86
EQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGP
Sbjct: 14 EQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGP 73
Query: 87 ARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRSAPEPVPAVRTRVHGASR 146
ARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRSAPEPVPAVRTRVHGASR
Sbjct: 74 ARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRSAPEPVPAVRTRVHGASR 133
Query: 147 RLVCRWDCPFPPA 159
RLVCRWDCPFPPA
Sbjct: 134 RLVCRWDCPFPPA 146
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 42.7 bits (99), Expect = 1e-04
Identities = 49/145 (33%), Positives = 58/145 (40%), Gaps = 28/145 (19%)
Query: 31 PLARRLPGHQRASGRHLRRRRGSCSSRRLSG-------PGRRAGAPTPRGPPPRPRSFPE 83
PL R P HQ + R L G+ S+ SG GR AG +P PP PRS PE
Sbjct: 3 PLRPRGP-HQGGTPRPLPASAGAQGSQARSGLRLCRTTQGRPAGGASP---PPSPRSRPE 58
Query: 84 -TGPAR-------------LGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRS 129
GP R G +AGP+ R+RP + P A R L + G R
Sbjct: 59 GPGPPRPATPSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALH-ARTRMGRAARG 117
Query: 130 APEPV--PAVRTRVHGASRRLVCRW 152
P P P R A RRL W
Sbjct: 118 PPAPSRGPLKRVTWTCAVRRLWTSW 142
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 42.7 bits (99), Expect = 1e-04
Identities = 49/145 (33%), Positives = 58/145 (40%), Gaps = 28/145 (19%)
Query: 31 PLARRLPGHQRASGRHLRRRRGSCSSRRLSG-------PGRRAGAPTPRGPPPRPRSFPE 83
PL R P HQ + R L G+ S+ SG GR AG +P PP PRS PE
Sbjct: 3 PLRPRGP-HQGGTPRPLPASAGAQGSQARSGLRLCRTTQGRPAGGASP---PPSPRSRPE 58
Query: 84 -TGPAR-------------LGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRS 129
GP R G +AGP+ R+RP + P A R L + G R
Sbjct: 59 GPGPPRPATPSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALH-ARTRMGRAARG 117
Query: 130 APEPV--PAVRTRVHGASRRLVCRW 152
P P P R A RRL W
Sbjct: 118 PPAPSRGPLKRVTWTCAVRRLWTSW 142
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 40.8 bits (94), Expect = 5e-04
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 30 PPLARRL---PGHQRASGRHLRRRRGSCSSRRLSGPG-----RRAGAPTPR---GPPPRP 78
PP RR+ P ++ S +RR S SS+ G R A +P P P PRP
Sbjct: 629 PPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRP 688
Query: 79 RSFPETG----PARLGAAAGPSSRARPSRGERP 107
R+ P+T P R GA++ P R PS RP
Sbjct: 689 RA-PQTSSSPPPVRRGASSSPQRRQSPSPSTRP 720
Score = 35.4 bits (80), Expect = 0.021
Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 35 RLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAG---APTPRGPPPRPRSFPETGPAR--- 88
R P H R RH R R S S RR P RR PR PP PR P R
Sbjct: 291 RSPSHTRPRRRH-RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 349
Query: 89 --LGAAAGPSSRARPSRGERP 107
+ +G SS + SR P
Sbjct: 350 RSSASLSGSSSSSSSSRSRSP 370
Score = 35.0 bits (79), Expect = 0.027
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 30 PPLARRLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRP---RSFPETGP 86
PP P R S +RRRR S +S LSG + + R PP +P S P
Sbjct: 328 PPRRMPPPPRHRRSRSPVRRRRRSSAS--LSGSSSSSSSSRSRSPPKKPPKRTSSPPRKT 385
Query: 87 ARLGAAAGPSSRA-RPSRGERP 107
RL +A P R RPS P
Sbjct: 386 RRLSPSASPPRRRHRPSPPATP 407
Score = 33.5 bits (75), Expect = 0.079
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 48 RRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRAR----PSR 103
RRRR S S P +R +PRG R S P T R + A P R R P R
Sbjct: 519 RRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPR 578
Query: 104 GERPWLAAQLRGLQVGQCCWGHRRRSAPEPVPAVRT 139
P + R + +RR +P P P RT
Sbjct: 579 RRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 614
Score = 31.6 bits (70), Expect = 0.30
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 30 PPLARRLPGHQRASGRHLRRRRGSCSSRRLSG----PGRRAGAPTP-------RGPPPRP 78
PP RR P +R S RR S +R + P +R +P+P PPP+
Sbjct: 584 PPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQ 643
Query: 79 RSFPETGPARLGAAAGPSSRARPSRGER 106
RS P T ++ + PSR R
Sbjct: 644 RSSPVTKRRSPSLSSKHRKGSSPSRSTR 671
Score = 28.1 bits (61), Expect = 3.3
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 30 PPLARRLPGHQRASGRHLRRRRGSCSSRRLSGPG--RRAGAPTPRGPPPRPRSFPETGPA 87
PP RR A RR RR P RR+ +P PP + R P P
Sbjct: 552 PPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPK 611
Query: 88 RLGAAAGPSSRARPSRGERP 107
R A+ P + R S P
Sbjct: 612 RRTASPPPPPKRRASPSPPP 631
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 39.7 bits (91), Expect = 0.001
Identities = 38/115 (33%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 22 QEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSF 81
+ +L + P ARR Q S RH RR + S + G +P PPP R
Sbjct: 385 EAHSLWPLQPRARR----QGGSDRHRRRGQSGASGLGTAAAGAERTSPVGARPPPPARLV 440
Query: 82 PETGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRSAPEPVPA 136
T P G AGP R G P A RGL +G C G RR + PA
Sbjct: 441 TNTAPTLGG--AGPRLEGR--GGAAP--PAGKRGLLIG--CEGDRRLRLEDASPA 487
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 39.7 bits (91), Expect = 0.001
Identities = 38/115 (33%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 22 QEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSF 81
+ +L + P ARR Q S RH RR + S + G +P PPP R
Sbjct: 475 EAHSLWPLQPRARR----QGGSDRHRRRGQSGASGLGTAAAGAERTSPVGARPPPPARLV 530
Query: 82 PETGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRSAPEPVPA 136
T P G AGP R G P A RGL +G C G RR + PA
Sbjct: 531 TNTAPTLGG--AGPRLEGR--GGAAP--PAGKRGLLIG--CEGDRRLRLEDASPA 577
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 39.7 bits (91), Expect = 0.001
Identities = 38/115 (33%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 22 QEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSF 81
+ +L + P ARR Q S RH RR + S + G +P PPP R
Sbjct: 475 EAHSLWPLQPRARR----QGGSDRHRRRGQSGASGLGTAAAGAERTSPVGARPPPPARLV 530
Query: 82 PETGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRSAPEPVPA 136
T P G AGP R G P A RGL +G C G RR + PA
Sbjct: 531 TNTAPTLGG--AGPRLEGR--GGAAP--PAGKRGLLIG--CEGDRRLRLEDASPA 577
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 39.3 bits (90), Expect = 0.001
Identities = 37/115 (32%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 36 LPGHQRAS------GRHLRRRRGSCSSRRLSGPGRRAGAP---------TPRGPPPRPRS 80
L G QRA G R R GPG A AP PRGP PR
Sbjct: 103 LAGRQRAGAAPRGPGGPARTPAVRAGRRAADGPGEEAPAPGRARFSGLSQPRGPQPRAAV 162
Query: 81 FPETG---PARLGAAAGPSSRARPSRGER----PWLAAQLRGLQVGQCCWGHRRR 128
P G P GA P RG R L +LRG G G R+R
Sbjct: 163 RPRRGGALPRGTGAVPERGPGTEPQRGRRCSDLQGLGGRLRGCPAGPSARGERQR 217
>gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo
sapiens]
Length = 162
Score = 39.3 bits (90), Expect = 0.001
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 41 RASGRHLRRRRGSCSSRRLSGPGRRAG--APT--PRGPPPRPRSFPETGPARLGAAAGPS 96
R G RGS +RLS GRR G APT PRGP PRP G A A P
Sbjct: 73 RGGGERWAAGRGSWL-QRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQ 131
Query: 97 SRARPSR 103
S A P+R
Sbjct: 132 STAPPAR 138
>gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo
sapiens]
Length = 192
Score = 39.3 bits (90), Expect = 0.001
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 41 RASGRHLRRRRGSCSSRRLSGPGRRAG--APT--PRGPPPRPRSFPETGPARLGAAAGPS 96
R G RGS +RLS GRR G APT PRGP PRP G A A P
Sbjct: 73 RGGGERWAAGRGSWL-QRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQ 131
Query: 97 SRARPSR 103
S A P+R
Sbjct: 132 STAPPAR 138
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 38.9 bits (89), Expect = 0.002
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 61 GPGRRAGAPTP--RGPPPRPRSFPETGPARLGAAAGPSSRARPSRGER 106
GP RR PT R PPRPR P P + AGP+S + P+ G +
Sbjct: 1151 GPRRRGRKPTKAKRDGPPRPRGRPRIRPLEVPTTAGPASASTPTDGAK 1198
Score = 30.4 bits (67), Expect = 0.67
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 62 PGRRAGAPTPRGPPPRPRSFPETGPARLGA--------AAGPSSRARPSRGERP 107
P R GAP P PPP P P P +L A A PS R RP P
Sbjct: 826 PATRDGAPQPPPPPPPP---PPPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDP 876
Score = 28.5 bits (62), Expect = 2.5
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 52 GSCSSRRLSGPGRRAGAPTP-RGPPPRPRSFPETGPARLGAAAGPSSRARPSRG----ER 106
G+ +GP G P GPPP P ++ GP G A+G P G +
Sbjct: 957 GAADDYGKAGPPEDEGDPKAGAGPPPGPPAYDPYGPYCPGRASGAGPET-PGLGLDPNKP 1015
Query: 107 PWLAAQLRGLQVGQCCWGHRRRSAPEPVP 135
P L + + +G G + + P P P
Sbjct: 1016 PELPSTVNAEPLGLIQSGPHQAAPPPPPP 1044
>gi|169202970 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/45 (51%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 55 SSRRLSGPGRRAGAPTPRGPPPRPRSFPETGP-ARLGAAAGPSSR 98
SSRR GP R G+P P PP SFP P AR GAA SR
Sbjct: 46 SSRRGLGPPRAGGSPPPTAPPTPTGSFPACRPGARFGAARCHQSR 90
>gi|169203510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/45 (51%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 55 SSRRLSGPGRRAGAPTPRGPPPRPRSFPETGP-ARLGAAAGPSSR 98
SSRR GP R G+P P PP SFP P AR GAA SR
Sbjct: 46 SSRRGLGPPRAGGSPPPTAPPTPTGSFPACRPGARFGAARCHQSR 90
>gi|169202296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/45 (51%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 55 SSRRLSGPGRRAGAPTPRGPPPRPRSFPETGP-ARLGAAAGPSSR 98
SSRR GP R G+P P PP SFP P AR GAA SR
Sbjct: 46 SSRRGLGPPRAGGSPPPTAPPTPTGSFPACRPGARFGAARCHQSR 90
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 38.1 bits (87), Expect = 0.003
Identities = 40/113 (35%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 37 PGHQRASGRHLRRR-RGSCSSRRL----------SGPGRRAGAPTPRGPPPRP-RSFPET 84
PG + GR +RR +G SSRRL S P R G+P P GP P R
Sbjct: 53 PGLSQRRGREVRREAQGGASSRRLRARLYFSESTSLPLDRRGSPGPLGPAPHGLRRAAPR 112
Query: 85 GPAR---LGAAAGPSSRA-RPSRGERPWLAAQLRGLQVGQCCWGHRRRSAPEP 133
GPAR A RA RP G+R L ++ R G W R A P
Sbjct: 113 GPARRTPRSTALTSRRRAQRPRHGDRLRLRSEARPRAAGD--WPCARGGAVRP 163
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 37.4 bits (85), Expect = 0.005
Identities = 41/130 (31%), Positives = 45/130 (34%), Gaps = 38/130 (29%)
Query: 56 SRRLSGPGRRAGAPTPRGPPP--RPRSFP----------------ETGPARLGAAA---- 93
SR GPG A AP+P PPP PRS P P RLG A
Sbjct: 7 SRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTR 66
Query: 94 ----GPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRSAPEPVPAVRTRVHGASRRLV 149
P+ RA P GE Q RG + G P P PA GA
Sbjct: 67 VPRSPPAGRAEPGGGE----DRQARGTEPG--------APGPSPGPAPGPGEDGAPAAGY 114
Query: 150 CRWDCPFPPA 159
RW+ P A
Sbjct: 115 RRWERAAPLA 124
>gi|223890203 zinc finger and BTB domain containing 22 [Homo
sapiens]
Length = 634
Score = 37.4 bits (85), Expect = 0.005
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 49 RRRGSCSSR-RLSGPGRRAGAPTPRGPP-PRPRSFPETGPARLGAAAGPSSRARPSRGER 106
R RG C R RL G G G TP GP P R P G G + +S A P R
Sbjct: 558 RHRGHCERRHRLGGVGAVPGPGTPTGPSLPSKRESPGVG----GGSGDEASAATPPSSRR 613
Query: 107 PWLAAQLRGLQVG 119
W ++ +++G
Sbjct: 614 VWSPPRVHKVEMG 626
>gi|223890199 zinc finger and BTB domain containing 22 [Homo
sapiens]
Length = 634
Score = 37.4 bits (85), Expect = 0.005
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 49 RRRGSCSSR-RLSGPGRRAGAPTPRGPP-PRPRSFPETGPARLGAAAGPSSRARPSRGER 106
R RG C R RL G G G TP GP P R P G G + +S A P R
Sbjct: 558 RHRGHCERRHRLGGVGAVPGPGTPTGPSLPSKRESPGVG----GGSGDEASAATPPSSRR 613
Query: 107 PWLAAQLRGLQVG 119
W ++ +++G
Sbjct: 614 VWSPPRVHKVEMG 626
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 37.0 bits (84), Expect = 0.007
Identities = 34/113 (30%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 18 IGLVQEQTLEQIPPLARRLP----GHQRASGRHLRRRRGSCSSRRLSGPGRRA------- 66
+ E + + P ARR P G QR + R L SS SGP R
Sbjct: 200 VSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAH 259
Query: 67 -GAPTPRG---------PPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWL 109
P P+G PPR + P GP A PS A PS P L
Sbjct: 260 PSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSL 312
Score = 30.8 bits (68), Expect = 0.51
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 4 GPLRFGAAGFRVVIIGLVQEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRLSGPG 63
GPL G G R+ V + P + G +R + +RR G
Sbjct: 118 GPL--GQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAG 175
Query: 64 RRAGAPTPRGPPPRPRSFPETGPARLGAAAG--------PSSRARPSRG 104
G P P P RPR P GP + ++A P++R RPS G
Sbjct: 176 TEVGLPRP-APSARPRP-PTEGPRKSVSSASEHSTTEPSPAARRRPSAG 222
Score = 30.0 bits (66), Expect = 0.87
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 52 GSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRA--RPSRGERPWL 109
G C+ GP AP P P P + G A GA AG SSR+ + GE P
Sbjct: 663 GLCTIYETEGPESATPAPGALDPGPSPGT--SGGKAAAGAGAGASSRSPKQARLGELPLG 720
Query: 110 AAQLRGLQ 117
A Q +Q
Sbjct: 721 ALQASVVQ 728
Score = 29.3 bits (64), Expect = 1.5
Identities = 34/114 (29%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 59 LSGPGRRAGAPTPRGPPPR-----------PRSFPETGPARLGAAAGPSSRARPSRGERP 107
L+ P + P P+ PP P SFP P A+ S A P P
Sbjct: 466 LAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP 525
Query: 108 WLAAQLRGLQVGQCCWGHRRRSAPE--PVPAVRTRVHGASRRLVCRWDCPFPPA 159
LAA L LQV AP P P T V G L P PP+
Sbjct: 526 VLAAPL--LQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPS 577
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 37.0 bits (84), Expect = 0.007
Identities = 45/147 (30%), Positives = 55/147 (37%), Gaps = 19/147 (12%)
Query: 20 LVQEQTLEQIPPLA--RRLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPR 77
++QE T + PLA R +R + R + + RR +G RR+ PP R
Sbjct: 90 VLQEATNWRAGPLAEVRAREQEKRKAASQEREAKETERKRRKAGGARRS-------PPGR 142
Query: 78 PRSFPETGP-----ARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRSAP- 131
PR P P A L A P A R RP Q WG RR P
Sbjct: 143 PRPEPRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWAGPWGGRRPGPPS 202
Query: 132 -EPVPAVRTRVHGASRRLVCRWDCPFP 157
E +R A RR RWD P P
Sbjct: 203 YEAHLLLRGSAGTAPRR---RWDRPPP 226
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 37.0 bits (84), Expect = 0.007
Identities = 31/74 (41%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 76 PRPRSFPETGPARL--------GAAAGPSSRARP-------SRGERPWLAAQLRGLQVGQ 120
PRP P TG A L AAA S+ RP SRG +LAA L GL +
Sbjct: 458 PRPPRCP-TGLAALLLLGLGLAAAAALGSAAHRPLRPLRLASRGLHAFLAAFLSGLLLAL 516
Query: 121 CCWGHRRRSAPEPV 134
CWG RRR A P+
Sbjct: 517 SCWGGRRRRAGAPL 530
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 36.6 bits (83), Expect = 0.009
Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 39/111 (35%)
Query: 57 RRLSGPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWLAAQL--R 114
RR +G RA P GP P P T P R E PW AA L R
Sbjct: 88 RRSAGHVARADVSPPAGPVPAP-----TPP-------------RARNAETPWNAASLLNR 129
Query: 115 GLQVGQCCWG--------------HRRRSAPEPVPAVRTRVHGASRRLVCR 151
G CCWG R+R P P + + R+ ASR+L R
Sbjct: 130 G-----CCWGAAALLIGRLLGANQKRQRMPPLPPSSPKARMERASRKLPSR 175
Score = 28.9 bits (63), Expect = 1.9
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 20/139 (14%)
Query: 12 GFRVVIIG--LVQEQTLEQIPPL------------ARRLPGHQRASGRHLRRRRGSCSSR 57
G ++IG L Q +++PPL +R+LP + H R + +
Sbjct: 134 GAAALLIGRLLGANQKRQRMPPLPPSSPKARMERASRKLPSRVNSRPPHPAPTRPTPRVQ 193
Query: 58 RLSGPGRRAGAPTPRG--PPPRPRSFPETGPARLGAAAGPSSRARPSRGE-RPWLAAQLR 114
G RA A RG PP R R ++GP R P+ R+ SRG RP +A
Sbjct: 194 GGFGREPRAAAGQGRGWLPPCRLR-LQDSGPRRRPGPGPPALRSGRSRGSGRPPDSAGAA 252
Query: 115 GLQVGQCCWGHRRRSAPEP 133
G G W R P P
Sbjct: 253 G--TGGSGWAAALRGWPAP 269
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 36.6 bits (83), Expect = 0.009
Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 39/111 (35%)
Query: 57 RRLSGPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWLAAQL--R 114
RR +G RA P GP P P T P R E PW AA L R
Sbjct: 88 RRSAGHVARADVSPPAGPVPAP-----TPP-------------RARNAETPWNAASLLNR 129
Query: 115 GLQVGQCCWG--------------HRRRSAPEPVPAVRTRVHGASRRLVCR 151
G CCWG R+R P P + + R+ ASR+L R
Sbjct: 130 G-----CCWGAAALLIGRLLGANQKRQRMPPLPPSSPKARMERASRKLPSR 175
Score = 28.9 bits (63), Expect = 1.9
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 20/139 (14%)
Query: 12 GFRVVIIG--LVQEQTLEQIPPL------------ARRLPGHQRASGRHLRRRRGSCSSR 57
G ++IG L Q +++PPL +R+LP + H R + +
Sbjct: 134 GAAALLIGRLLGANQKRQRMPPLPPSSPKARMERASRKLPSRVNSRPPHPAPTRPTPRVQ 193
Query: 58 RLSGPGRRAGAPTPRG--PPPRPRSFPETGPARLGAAAGPSSRARPSRGE-RPWLAAQLR 114
G RA A RG PP R R ++GP R P+ R+ SRG RP +A
Sbjct: 194 GGFGREPRAAAGQGRGWLPPCRLR-LQDSGPRRRPGPGPPALRSGRSRGSGRPPDSAGAA 252
Query: 115 GLQVGQCCWGHRRRSAPEP 133
G G W R P P
Sbjct: 253 G--TGGSGWAAALRGWPAP 269
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 36.6 bits (83), Expect = 0.009
Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 39/111 (35%)
Query: 57 RRLSGPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRARPSRGERPWLAAQL--R 114
RR +G RA P GP P P T P R E PW AA L R
Sbjct: 88 RRSAGHVARADVSPPAGPVPAP-----TPP-------------RARNAETPWNAASLLNR 129
Query: 115 GLQVGQCCWG--------------HRRRSAPEPVPAVRTRVHGASRRLVCR 151
G CCWG R+R P P + + R+ ASR+L R
Sbjct: 130 G-----CCWGAAALLIGRLLGANQKRQRMPPLPPSSPKARMERASRKLPSR 175
Score = 28.9 bits (63), Expect = 1.9
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 20/139 (14%)
Query: 12 GFRVVIIG--LVQEQTLEQIPPL------------ARRLPGHQRASGRHLRRRRGSCSSR 57
G ++IG L Q +++PPL +R+LP + H R + +
Sbjct: 134 GAAALLIGRLLGANQKRQRMPPLPPSSPKARMERASRKLPSRVNSRPPHPAPTRPTPRVQ 193
Query: 58 RLSGPGRRAGAPTPRG--PPPRPRSFPETGPARLGAAAGPSSRARPSRGE-RPWLAAQLR 114
G RA A RG PP R R ++GP R P+ R+ SRG RP +A
Sbjct: 194 GGFGREPRAAAGQGRGWLPPCRLR-LQDSGPRRRPGPGPPALRSGRSRGSGRPPDSAGAA 252
Query: 115 GLQVGQCCWGHRRRSAPEP 133
G G W R P P
Sbjct: 253 G--TGGSGWAAALRGWPAP 269
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 36.6 bits (83), Expect = 0.009
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 69 PTPRGPPPRPRSFPETGP-ARLGAAAGPSSR 98
P RGPPP R+ PE GP R G AGP +R
Sbjct: 1936 PARRGPPPLARAVPEPGPRGRAGTEAGPGAR 1966
Score = 28.9 bits (63), Expect = 1.9
Identities = 37/118 (31%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 54 CSSR--RLSGPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSS---RARPSRGERPW 108
CSSR L R+ AP R PP R P PAR + PS RA +R E
Sbjct: 2039 CSSRCEELRAAPRQGPAPA-RQRPPAARPSPGERPARRTTSESPSRLPVRAPAARPETVK 2097
Query: 109 LAAQLRGLQVGQCCWG-----------HRRRSAPEPVPAVRTRVHGASRRLVCRWDCP 155
A L + V + G RR S EP P R G + R + D P
Sbjct: 2098 RYASLPHISVARRPDGAVPAAPASADAARRSSDGEPRPLPRVAAPGTTWRRIRDEDVP 2155
Score = 26.9 bits (58), Expect = 7.4
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 27 EQIPPLARRLPGHQRASG--RHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPP---RPRSF 81
++ PP A P H+R S R R R + P + A P PPP +P
Sbjct: 1515 DEEPPAAAPTPTHRRTSAIPRAFTRERPQ-GRKEAPAPSKAA----PAAPPPARTQPSLI 1569
Query: 82 PETGPARLGAAAGPSSRARPSRGERP 107
+ P ++ SS + P E P
Sbjct: 1570 ADETPPCYSLSSSASSLSEPEPSEPP 1595
Score = 26.6 bits (57), Expect = 9.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 37 PGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPS 96
PG QR+ R L R + LS P R A PP R P + ++ A+ P
Sbjct: 1835 PGQQRS--RSLHRPAKTSELATLSQPPRSAT------PPARLAKTPSSSSSQTSPASQPL 1886
Query: 97 SRARP 101
R RP
Sbjct: 1887 PRKRP 1891
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.012
Identities = 36/107 (33%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 41 RASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGPARLGAAAGPSSRAR 100
RASGR S + R P RR G P R P PRP + G A P+SR
Sbjct: 95 RASGRPHGNTTASTAPPRHPRP-RRPGGPALR-PTPRPCA---------GPAPPPASRDC 143
Query: 101 PSRGERPWLAAQLRGLQVGQC---CWGHRRRSAPEPVPAVRTRVHGA 144
R R W A RG + G C C G + P+ + RT G+
Sbjct: 144 RCRRPRRWPRAGRRGRRAGACKPSCAGAAWSARGAPLCSYRTSCAGS 190
>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 361
Score = 35.8 bits (81), Expect = 0.016
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 19 GLVQEQTLEQIPPLARRLPGHQRASGRHLRRRRGSCSSRRL---------SGPGRRAGAP 69
G + L +PP R R+ G G C RL + PG R G
Sbjct: 237 GCTRRALLGHLPP---RRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARPGARRGGR 293
Query: 70 TPRGPPPRPRSFPETGPARLGAA-AGPSSRARPSRG 104
PR P P R PE P R GAA +G + +R G
Sbjct: 294 RPRSPSP-ARGEPEPEPERSGAARSGTGAESRAGAG 328
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 35.8 bits (81), Expect = 0.016
Identities = 38/116 (32%), Positives = 42/116 (36%), Gaps = 22/116 (18%)
Query: 38 GHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPE-------------- 83
G A + RR RG+ S+ P R AP P PPP P P
Sbjct: 36 GAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAF 95
Query: 84 TGPARLGAAAGPSSRARPSRGERPWLAAQLRGLQVGQCCWGHRRRSAPEPVPAVRT 139
P LG A S RA S G AA L Q G G R P PA+RT
Sbjct: 96 VSPGPLGRRASCSGRA-GSAGRLRCSAAALSAAQRG----GPARAQVP---PALRT 143
Score = 30.8 bits (68), Expect = 0.51
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 31 PLARRLPGHQRASGRHLRRRRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGPARLG 90
PL RR SGR R CS+ LS R G P PP R+F
Sbjct: 100 PLGRRAS----CSGRAGSAGRLRCSAAALSAAQR--GGPARAQVPPALRTF--------- 144
Query: 91 AAAGPSSRARPSRGERPWLAAQLRGLQVGQC 121
+ GP+S R S G RP ++ RG +C
Sbjct: 145 -SPGPASPPRASPGGRP--GSEARGRSGAEC 172
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,934,933
Number of Sequences: 37866
Number of extensions: 567427
Number of successful extensions: 7461
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 809
Number of HSP's that attempted gapping in prelim test: 5311
Number of HSP's gapped (non-prelim): 2772
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.