Search of human proteins with 239742859

Search of human proteins with 239742859

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742859 PREDICTED: hypothetical protein XP_002342682 [Homo
sapiens]
         (153 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754291 PREDICTED: hypothetical protein [Homo sapiens]           322   6e-89
gi|239748828 PREDICTED: hypothetical protein XP_002346813 [Homo ...   322   6e-89
gi|239742859 PREDICTED: hypothetical protein XP_002342682 [Homo ...   322   6e-89
gi|239740809 PREDICTED: hypothetical protein [Homo sapiens]           322   6e-89
gi|239740705 PREDICTED: hypothetical protein [Homo sapiens]           322   6e-89
gi|239513967 PREDICTED: hypothetical protein [Homo sapiens]           322   6e-89
gi|239740875 PREDICTED: hypothetical protein XP_002344061 [Homo ...   322   8e-89
gi|239740759 PREDICTED: hypothetical protein [Homo sapiens]           322   8e-89
gi|110227615 echinoderm microtubule associated protein like 3 [H...    34   0.043
gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo s...    34   0.056
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s...    34   0.056
gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo s...    34   0.056
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s...    34   0.056
gi|151301154 mucin 6, gastric [Homo sapiens]                           31   0.36 
gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]        31   0.47 
gi|4759022 RAD9 homolog [Homo sapiens]                                 31   0.47 
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]              31   0.47 
gi|55749678 ninein-like [Homo sapiens]                                 31   0.47 
gi|148806908 fibronectin type III domain containing 1 [Homo sapi...    30   0.62 
gi|45505145 neuromedin B isoform 2 [Homo sapiens]                      30   0.81 
gi|229577422 solute carrier family 39, member 11 isoform 1 [Homo...    30   1.1  
gi|24497501 forkhead box A1 [Homo sapiens]                             30   1.1  
gi|83367077 mucin 16 [Homo sapiens]                                    30   1.1  
gi|239753682 PREDICTED: hypothetical protein XP_002345751 [Homo ...    30   1.1  
gi|239748296 PREDICTED: hypothetical protein [Homo sapiens]            30   1.1  
gi|239742194 PREDICTED: hypothetical protein XP_002342449 [Homo ...    30   1.1  
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    30   1.1  
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    30   1.1  
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    30   1.1  
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    30   1.1  

>gi|239754291 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score =  322 bits (826), Expect = 6e-89
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
           MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60

Query: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
           LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120

Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
           GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153


>gi|239748828 PREDICTED: hypothetical protein XP_002346813 [Homo
           sapiens]
          Length = 153

 Score =  322 bits (826), Expect = 6e-89
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
           MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60

Query: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
           LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120

Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
           GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153


>gi|239742859 PREDICTED: hypothetical protein XP_002342682 [Homo
           sapiens]
          Length = 153

 Score =  322 bits (826), Expect = 6e-89
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
           MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60

Query: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
           LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120

Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
           GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153


>gi|239740809 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score =  322 bits (826), Expect = 6e-89
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
           MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60

Query: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
           LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120

Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
           GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153


>gi|239740705 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score =  322 bits (826), Expect = 6e-89
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
           MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60

Query: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
           LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120

Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
           GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153


>gi|239513967 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score =  322 bits (826), Expect = 6e-89
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
           MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60

Query: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
           LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120

Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
           GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153


>gi|239740875 PREDICTED: hypothetical protein XP_002344061 [Homo
           sapiens]
          Length = 153

 Score =  322 bits (825), Expect = 8e-89
 Identities = 152/153 (99%), Positives = 153/153 (100%)

Query: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
           MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60

Query: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
           LLFTDALQAGQSRLLRT+TSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61  LLFTDALQAGQSRLLRTITSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120

Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
           GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153


>gi|239740759 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score =  322 bits (825), Expect = 8e-89
 Identities = 152/153 (99%), Positives = 153/153 (100%)

Query: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
           MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1   MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60

Query: 61  LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
           LLFTDALQAGQSRLLRT+TSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61  LLFTDALQAGQSRLLRTITSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120

Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
           GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153


>gi|110227615 echinoderm microtubule associated protein like 3 [Homo
           sapiens]
          Length = 896

 Score = 34.3 bits (77), Expect = 0.043
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 89  TPIRSSGVRGAPSRPSWLPCFLLLPP---LEGNAQGQVLGEVVHCGIPSCLHIPGMGG 143
           T  R  GV G   +P ++PCF+ LP    L G+++G +L        PS    PG GG
Sbjct: 445 TLTRKQGVFGKYKKPKFIPCFVFLPDGDILTGDSEGNIL---TWGRSPSDSKTPGRGG 499


>gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo
           sapiens]
          Length = 554

 Score = 33.9 bits (76), Expect = 0.056
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 22  TAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTD 65
           T P   TP  +  S    SAS    HRE  A+  D DG +L+TD
Sbjct: 330 TVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTD 373


>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
           sapiens]
          Length = 634

 Score = 33.9 bits (76), Expect = 0.056
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 22  TAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTD 65
           T P   TP  +  S    SAS    HRE  A+  D DG +L+TD
Sbjct: 410 TVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTD 453


>gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo
           sapiens]
          Length = 565

 Score = 33.9 bits (76), Expect = 0.056
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 22  TAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTD 65
           T P   TP  +  S    SAS    HRE  A+  D DG +L+TD
Sbjct: 341 TVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTD 384


>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
           sapiens]
          Length = 645

 Score = 33.9 bits (76), Expect = 0.056
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 22  TAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTD 65
           T P   TP  +  S    SAS    HRE  A+  D DG +L+TD
Sbjct: 421 TVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTD 464


>gi|151301154 mucin 6, gastric [Homo sapiens]
          Length = 2439

 Score = 31.2 bits (69), Expect = 0.36
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 20   HSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLL--RT 77
            HST   +G+ S +S  P   S S S      PA+   +   L  T +     S LL   T
Sbjct: 2171 HSTTLSSGSHSSLSTHPTTASVSASPLFPSSPAASTTIRATLPHTISSPFTLSALLPIST 2230

Query: 78   VTSSGTPT---------LPATPIRSSGVRGAPS 101
            VT S TP+          P+TP  ++    AP+
Sbjct: 2231 VTVSPTPSSHLASSTIAFPSTPRTTASTHTAPA 2263


>gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]
          Length = 366

 Score = 30.8 bits (68), Expect = 0.47
 Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 25/106 (23%)

Query: 48  RERPASR-------CDVDGVLLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAP 100
           RERP  R       C +  VLLF   L A   R        G+PT           R AP
Sbjct: 3   RERPPGRGCGVLRRCLLGAVLLFGLRLCAELRR-----AGPGSPT-----------RSAP 46

Query: 101 SRPSWLPCFLLLPPLEGNAQGQVLGEVVHCGIPSCLHIPGMGGRTG 146
             P+W P    LPP  G  +G    +V +  + S    P  GG +G
Sbjct: 47  PGPAWRPPGPHLPPAPGQPRGASRRQVTY--VRSGRRAPPGGGGSG 90


>gi|4759022 RAD9 homolog [Homo sapiens]
          Length = 391

 Score = 30.8 bits (68), Expect = 0.47
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 27  GTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQAGQ-SRLLRTVTSSGTPT 85
           G+P R  H P P   +HST H +  A+  D+D  ++  +     + SR+L +++ S  P 
Sbjct: 276 GSPER--HQPVPQLQAHSTPHPDDFAND-DIDSYMIAMETTIGNEGSRVLPSISLSPGPQ 332

Query: 86  LPATP 90
            P +P
Sbjct: 333 PPKSP 337


>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
          Length = 1586

 Score = 30.8 bits (68), Expect = 0.47
 Identities = 35/133 (26%), Positives = 44/133 (33%), Gaps = 8/133 (6%)

Query: 26  AGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTVTSSGTPT 85
           AG P   S + +    S   S R   AS+C     LL     Q    R      + G P 
Sbjct: 843 AGRPHNASSADSYDPISTDASRRSSEASQCSGGSGLLNLTPAQQYSLRAKYAAATGGPPP 902

Query: 86  LPATPIRSSGVR------GAPSRPSWLPCFLLLPPLEGNAQGQVLGEVVHCGIPSCLH-I 138
            P   +    +R       AP R     C   L P  G + G   G       P+  H  
Sbjct: 903 TPLPGLERMSLRTRLALLDAPERTLPAGCPRPLGPRRG-SDGPTYGHGHAGAAPAFPHEA 961

Query: 139 PGMGGRTGLEPER 151
           PG G R   +P R
Sbjct: 962 PGGGARRASDPVR 974


>gi|55749678 ninein-like [Homo sapiens]
          Length = 1382

 Score = 30.8 bits (68), Expect = 0.47
 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 13/65 (20%)

Query: 3   PFLWLSPGGVTLDPWWEHSTAPVAG--------TPSRISHSPAPGSASHSTSHRERPASR 54
           P  WL+PG        E   A  AG        T +  S +PAP  ASH  S R      
Sbjct: 857 PLAWLAPGDGR-----ESEEAAGAGPRRRQAQDTEATQSPAPAPAPASHGPSERWSRMQP 911

Query: 55  CDVDG 59
           C VDG
Sbjct: 912 CGVDG 916


>gi|148806908 fibronectin type III domain containing 1 [Homo
           sapiens]
          Length = 1894

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 24/129 (18%)

Query: 16  PWWEHSTAPVAGTPSRISHSPAPGSASHSTSHR-ERPASRCDVDGVLLFTDALQAGQ--- 71
           P +  +T P  G P   S SPA  +++  TSHR   PAS  D D V    D    G    
Sbjct: 600 PGFSLATQPRPGAPPSASASPAHHASTQGTSHRPSLPASLNDNDLVDSDEDERAVGSLHP 659

Query: 72  ------------------SRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPS--WLPCFLL 111
                             S +LR  +S      PA+P R +   GA    S    P   L
Sbjct: 660 KGAFAQPRPALSPSRQSPSSVLRDRSSVHPGAKPASPARRTPHSGAAEEDSSASAPPSRL 719

Query: 112 LPPLEGNAQ 120
            PP  G+++
Sbjct: 720 SPPHGGSSR 728


>gi|45505145 neuromedin B isoform 2 [Homo sapiens]
          Length = 154

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 21  STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTV- 78
           +T    G  S    SP+P G+A H++   +R     D+ G+LL   AL    SR    + 
Sbjct: 51  ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110

Query: 79  TSSGTPTLPATPI 91
            ++GT T   TPI
Sbjct: 111 EAAGTNTAEMTPI 123


>gi|229577422 solute carrier family 39, member 11 isoform 1 [Homo
           sapiens]
          Length = 342

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 62  LFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLL 112
           L +D  + G++   +   ++G P  PA P+ S G    P   SW    LL+
Sbjct: 148 LLSDKSENGEAYQRKKAAATGLPEGPAVPVPSRGNLAQPGGSSWRRIALLI 198


>gi|24497501 forkhead box A1 [Homo sapiens]
          Length = 472

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 7   LSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDA 66
           L P    ++P      +P+A  PS +  S A G     T  R  P ++     + L T A
Sbjct: 127 LGPYAAAMNP----CMSPMAYAPSNLGRSRAGGGGDAKTFKRSYPHAKPPYSYISLITMA 182

Query: 67  LQAGQSRLL 75
           +Q   S++L
Sbjct: 183 IQQAPSKML 191


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 4   FLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERP-ASRCDVDGVLL 62
           FL LSP G T +   E S   +  T      SP PGSA HS      P +S   V    +
Sbjct: 237 FLDLSPKG-TPNSRGETSLELILSTTGYPFSSPEPGSAGHSRISTSAPLSSSASVLDNKI 295

Query: 63  FTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGV 96
              ++ +GQS  L +  S G P   A+ + +S +
Sbjct: 296 SETSIFSGQS--LTSPLSPGVPEARASTMPNSAI 327



 Score = 26.6 bits (57), Expect = 8.9
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 13    TLDPWWEH---STAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQA 69
             T+  W  H   ++ PV+ T S  SHS    +   +TS R   +S        + T     
Sbjct: 11686 TMASWVTHPPQTSTPVSRTTSSFSHSSPDATPVMATSPRTEASS-------AVLTTISPG 11738

Query: 70    GQSRLLRTVTSSGTPTLPATP 90
                 +   +TSSG  T    P
Sbjct: 11739 APEMVTSQITSSGAATSTTVP 11759


>gi|239753682 PREDICTED: hypothetical protein XP_002345751 [Homo
           sapiens]
          Length = 186

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 36  PAPGSASHSTSHR-----ERPASRCDVDGV-LLFTDALQAGQSRLLRTVTSSGTPTLPAT 89
           P+PG  SHS+ +R        +S C + G+ L       A     L  V    +   P  
Sbjct: 19  PSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVAVGASGEAPGR 78

Query: 90  PIRSSGVRGAPSRPS 104
           P    GVRG   RP+
Sbjct: 79  PRPPGGVRGLGRRPA 93


>gi|239748296 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 36  PAPGSASHSTSHR-----ERPASRCDVDGV-LLFTDALQAGQSRLLRTVTSSGTPTLPAT 89
           P+PG  SHS+ +R        +S C + G+ L       A     L  V    +   P  
Sbjct: 19  PSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVAVGASGEAPGR 78

Query: 90  PIRSSGVRGAPSRPS 104
           P    GVRG   RP+
Sbjct: 79  PRPPGGVRGLGRRPA 93


>gi|239742194 PREDICTED: hypothetical protein XP_002342449 [Homo
           sapiens]
          Length = 186

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 36  PAPGSASHSTSHR-----ERPASRCDVDGV-LLFTDALQAGQSRLLRTVTSSGTPTLPAT 89
           P+PG  SHS+ +R        +S C + G+ L       A     L  V    +   P  
Sbjct: 19  PSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVAVGASGEAPGR 78

Query: 90  PIRSSGVRGAPSRPS 104
           P    GVRG   RP+
Sbjct: 79  PRPPGGVRGLGRRPA 93


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 23  APVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTVTSSG 82
           AP AG P+ +S  P PG+A+ + +   +  S   V         +QA      +T+ +SG
Sbjct: 316 APAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRV---------VQAAPP-AAQTLAASG 365

Query: 83  TPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQG 121
             +  A+ +    ++GA   P+ +P     PP  G   G
Sbjct: 366 PASTAASMVIGPTMQGALPSPAAVP-----PPAPGTPTG 399


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 76  RTVTSSGTPTLPATPIRSS--------GVRGAPSRPSWLPCFLLLPPLEGNAQGQVLGEV 127
           +T+T  G P LP  P R          G+ G P  P  +P     P + G       G  
Sbjct: 657 QTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG-IPGSKGEPGIPGIGLPGPPGPK 715

Query: 128 VHCGIPSCLHIPGMGGRTGLE 148
              GIP     PG  GR GLE
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLE 736


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 76  RTVTSSGTPTLPATPIRSS--------GVRGAPSRPSWLPCFLLLPPLEGNAQGQVLGEV 127
           +T+T  G P LP  P R          G+ G P  P  +P     P + G       G  
Sbjct: 657 QTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG-IPGSKGEPGIPGIGLPGPPGPK 715

Query: 128 VHCGIPSCLHIPGMGGRTGLE 148
              GIP     PG  GR GLE
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLE 736


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 76  RTVTSSGTPTLPATPIRSS--------GVRGAPSRPSWLPCFLLLPPLEGNAQGQVLGEV 127
           +T+T  G P LP  P R          G+ G P  P  +P     P + G       G  
Sbjct: 657 QTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG-IPGSKGEPGIPGIGLPGPPGPK 715

Query: 128 VHCGIPSCLHIPGMGGRTGLE 148
              GIP     PG  GR GLE
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLE 736


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,878,716
Number of Sequences: 37866
Number of extensions: 415996
Number of successful extensions: 1830
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 169
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.