Guide to the Human Genome
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Name: LOC100289525 Sequence: fasta or formatted (153aa) NCBI GI: 239742859
Description:

PREDICTED: hypothetical protein XP_002342682

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         10           1
 C cysteine            2.6          4           1
 D aspartate           2.6          4           1
 E glutamate           3.9          6           1
 F phenylalanine       2.0          3           1
 G glycine            11.1         17           2
 H histidine           3.9          6           1
 I isoleucine          2.6          4           1
 K lysine              0.0          0           0
 L leucine            11.8         18           3
 M methionine          1.3          2           1
 N asparagine          0.7          1           1
 P proline            12.4         19           2
 Q glutamine           2.6          4           1
 R arginine            7.8         12           1
 S serine             11.8         18           2
 T threonine           7.2         11           1
 V valine              6.5         10           2
 W tryptophan          2.6          4           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342682 
LOC100292194          1.000   PREDICTED: hypothetical protein 
LOC100291023          1.000   PREDICTED: hypothetical protein XP_002346813 
LOC100294226          1.000   PREDICTED: hypothetical protein 
LOC100294164          1.000   PREDICTED: hypothetical protein 
LOC100294118          1.000   PREDICTED: hypothetical protein 
LOC100294281          1.000   PREDICTED: hypothetical protein XP_002344061 
LOC100294194          1.000   PREDICTED: hypothetical protein 
EML3                  0.030   echinoderm microtubule associated protein like 3 [H...
PHACTR2               0.030   phosphatase and actin regulator 2 isoform 4 
PHACTR2               0.030   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.030   phosphatase and actin regulator 2 isoform 2 
PHACTR2               0.030   phosphatase and actin regulator 2 isoform 1 
MUC6                  0.020   mucin 6, gastric 
C6orf186              0.020   chromosome 6 open reading frame 186 
RAD9A                 0.020   RAD9 homolog 
GLI2                  0.020   GLI-Kruppel family member GLI2 
NINL                  0.020   ninein-like 
FNDC1                 0.017   fibronectin type III domain containing 1 
NMB                   0.017   neuromedin B isoform 2 
SLC39A11              0.017   solute carrier family 39, member 11 isoform 1 [Homo...
FOXA1                 0.017   forkhead box A1 
MUC16                 0.017   mucin 16 
LOC100291718          0.017   PREDICTED: hypothetical protein XP_002345751 
LOC100287726          0.017   PREDICTED: hypothetical protein 
LOC100287726          0.017   PREDICTED: hypothetical protein XP_002342449 
TAF4                  0.017   TBP-associated factor 4 
COL4A5                0.017   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.017   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.017   type IV collagen alpha 5 isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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