Guide to the Human Genome
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Name: LOC100289233 Sequence: fasta or formatted (107aa) NCBI GI: 239742846
Description:

PREDICTED: hypothetical protein XP_002342676

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4          9           2
 C cysteine            2.8          3           1
 D aspartate           1.9          2           1
 E glutamate           2.8          3           1
 F phenylalanine       2.8          3           1
 G glycine            13.1         14           1
 H histidine           5.6          6           2
 I isoleucine          1.9          2           1
 K lysine              1.9          2           1
 L leucine            11.2         12           2
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline            15.9         17           2
 Q glutamine           6.5          7           1
 R arginine            4.7          5           1
 S serine              9.3         10           2
 T threonine           1.9          2           1
 V valine              5.6          6           1
 W tryptophan          1.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342676 
LOC100292000          1.000   PREDICTED: hypothetical protein XP_002345938 
LOC100290815          1.000   PREDICTED: hypothetical protein XP_002346806 
LOC100294309          1.000   PREDICTED: hypothetical protein XP_002344080 
LOC100294268          1.000   PREDICTED: hypothetical protein XP_002344045 
LOC100294218          1.000   PREDICTED: hypothetical protein 
LOC100294183          1.000   PREDICTED: hypothetical protein 
LOC100294154          1.000   PREDICTED: hypothetical protein 
COL4A1                0.063   alpha 1 type IV collagen preproprotein 
PPRC1                 0.039   peroxisome proliferator-activated receptor gamma, co...
WBP11                 0.039   WW domain binding protein 11 
LOC100287141          0.034   PREDICTED: hypothetical protein XP_002343631 
LMTK3                 0.034   lemur tyrosine kinase 3 
COL8A2                0.034   collagen, type VIII, alpha 2 
ADNP2                 0.034   ADNP homeobox 2 
SOD2                  0.034   manganese superoxide dismutase isoform A precursor [...
SOD2                  0.034   manganese superoxide dismutase isoform A precursor [...
MYO15A                0.034   myosin XV 
COL11A2               0.034   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.034   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.034   collagen, type XI, alpha 2 isoform 1 preproprotein ...
HGS                   0.029   hepatocyte growth factor-regulated tyrosine kinase su...
DIAPH1                0.029   diaphanous 1 isoform 2 
DIAPH1                0.029   diaphanous 1 isoform 1 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.029   PREDICTED: hypothetical protein LOC80164 
SFRS14                0.029   splicing factor, arginine/serine-rich 14 
SFRS14                0.029   splicing factor, arginine/serine-rich 14 
SAMD1                 0.029   sterile alpha motif domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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