Guide to the Human Genome
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Name: SOD2 Sequence: fasta or formatted (222aa) NCBI GI: 67782305
Description:

manganese superoxide dismutase isoform A precursor

Referenced in:

Mitochondria
Superoxide Pathway

Other entries for this name:
alt mRNA [222aa] manganese superoxide dismutase isoform A precursor
alt prot [183aa] manganese superoxide dismutase isoform B precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         19           2
 C cysteine            1.4          3           1
 D aspartate           3.6          8           1
 E glutamate           5.4         12           2
 F phenylalanine       2.7          6           1
 G glycine             9.9         22           3
 H histidine           4.5         10           2
 I isoleucine          5.0         11           1
 K lysine              6.8         15           2
 L leucine            10.8         24           2
 M methionine          1.4          3           1
 N asparagine          6.3         14           2
 P proline             5.0         11           1
 Q glutamine           5.4         12           1
 R arginine            3.2          7           1
 S serine              4.5         10           1
 T threonine           3.6          8           2
 V valine              5.0         11           1
 W tryptophan          2.7          6           1
 Y tyrosine            4.5         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   manganese superoxide dismutase isoform A precursor [... 
SOD2                  1.000   manganese superoxide dismutase isoform A precursor [...
SOD2                  0.770   manganese superoxide dismutase isoform B precursor [...
LOC100292000          0.016   PREDICTED: hypothetical protein XP_002345938 
LOC100290815          0.016   PREDICTED: hypothetical protein XP_002346806 
LOC100289233          0.016   PREDICTED: hypothetical protein XP_002342676 
LOC100294309          0.016   PREDICTED: hypothetical protein XP_002344080 
LOC100294268          0.016   PREDICTED: hypothetical protein XP_002344045 
LOC100294218          0.016   PREDICTED: hypothetical protein 
LOC100294183          0.016   PREDICTED: hypothetical protein 
LOC100294154          0.016   PREDICTED: hypothetical protein 
TACC2                 0.011   transforming, acidic coiled-coil containing protein...
DSCAM                 0.009   Down syndrome cell adhesion molecule isoform CHD2-42...
PROCA1                0.007   protein interacting with cyclin A1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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