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Search of human proteins with 239742701
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742701 PREDICTED: hypothetical protein XP_002342609 [Homo
sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742701 PREDICTED: hypothetical protein XP_002342609 [Homo ... 382 e-106
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 40 0.001
gi|161019170 mucin 5AC [Homo sapiens] 35 0.051
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 34 0.067
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 32 0.25
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 32 0.25
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 32 0.25
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 32 0.33
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 32 0.33
gi|151301154 mucin 6, gastric [Homo sapiens] 32 0.33
gi|168229256 ankyrin repeat domain 41 [Homo sapiens] 32 0.33
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 32 0.33
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 32 0.33
gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens] 31 0.74
gi|116268091 PHD finger protein 23 [Homo sapiens] 31 0.74
gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Ho... 30 0.97
gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Ho... 30 0.97
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 30 1.6
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] 29 2.2
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 29 2.2
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 29 2.2
gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens] 29 2.2
gi|4504095 motilin receptor [Homo sapiens] 29 2.2
gi|83367077 mucin 16 [Homo sapiens] 29 2.8
gi|239749510 PREDICTED: hypothetical protein, partial [Homo sapi... 29 2.8
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 29 2.8
gi|4507319 surfeit 1 [Homo sapiens] 28 3.7
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 28 3.7
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom... 28 3.7
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom... 28 3.7
>gi|239742701 PREDICTED: hypothetical protein XP_002342609 [Homo
sapiens]
Length = 192
Score = 382 bits (981), Expect = e-106
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MHELSVSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAW 60
MHELSVSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAW
Sbjct: 1 MHELSVSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAW 60
Query: 61 LLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDA 120
LLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDA
Sbjct: 61 LLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDA 120
Query: 121 AVATTRRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVTLL 180
AVATTRRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVTLL
Sbjct: 121 AVATTRRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVTLL 180
Query: 181 LRGGMPASRALT 192
LRGGMPASRALT
Sbjct: 181 LRGGMPASRALT 192
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 40.0 bits (92), Expect = 0.001
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 39 STSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSAS---SQWSFTSTSRRWRVAFAS 95
STSAA+ TS+ A A L S S +VT+ SAS + STS AS
Sbjct: 1822 STSAAAITSSSAPASAPAPTPILASVSTPASVTILASASIPILASALASTSAPTPAPAAS 1881
Query: 96 SRVLVVLIS---PVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGLHPLNTAPAHS 152
S V+ + P +PT A+V + +P AP+P S +P APA +
Sbjct: 1882 SPAAPVITAPTIPASAPT---------ASVPLAPASASAPAPAPTPVSAPNPAPPAPAQT 1932
Query: 153 QR------RQPTQGASSADKVVVPAL-IPGSVT 178
Q + P Q S + K P++ +P + T
Sbjct: 1933 QAQTHKPVQNPLQTTSQSSKQPPPSIRLPSAQT 1965
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 34.7 bits (78), Expect = 0.051
Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 12/157 (7%)
Query: 27 TTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTS 86
TT A + T T+T A +TP+ + + + T T S S+
Sbjct: 3938 TTHTATVLTTTTTTVATGSMATPSSSTQTSGTTHTPPVPNTTATTHGRSLPP-----SSP 3992
Query: 87 RRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGL---- 142
R A+ S+ ++ + + P+ T AA +T +HS +P P S
Sbjct: 3993 HTVRTAWTSATSGILGTTHITEPST--VTSHTPAATTSTTQHSTPALSSPHPSSRTTESP 4050
Query: 143 -HPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVT 178
P T P H++ T ++ K L+P S T
Sbjct: 4051 PSPGTTTPGHTRGTSRTTATATPSKTRTSTLLPSSPT 4087
Score = 33.1 bits (74), Expect = 0.15
Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 27 TTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTS 86
TT + T T+T A +TP+ + + + T T S S S+
Sbjct: 3293 TTHTPTVLTTTTTTVATGSMATPSSSTQTSGTTHTPPVPNTTATTHGRSLSP-----SSP 3347
Query: 87 RRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGL---- 142
R A+ S+ + + + P+ T AA T +HS +P P S
Sbjct: 3348 HTVRTAWTSATSGTLGTTHITEPSTG--TSHTPAATTGTTQHSTPALSSPHPSSRTTESP 3405
Query: 143 -HPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVT 178
P T P H++ T ++ K L+P S T
Sbjct: 3406 PSPGTTTPGHTRATSRTTATATPSKTRTSTLLPSSPT 3442
Score = 32.7 bits (73), Expect = 0.19
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 1 MHELSVSCAKHRSVVYSSNVSTNRLDTTQ------------MAMIRYTLTSTSAASRTST 48
+H S H S V ++ +T R ++ + + T+T+A T+T
Sbjct: 3677 IHPSSTPETTHTSTVLTTKATTTRATSSMSTPSSTPGTTWILTELTTAATTTAATGPTAT 3736
Query: 49 PAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQS 108
P+ T W+L+ +TT TV V S + +ST A++ L VL S +
Sbjct: 3737 PSSTPGTT---WILT-EPSTTATVTVPTGSTATASSTR-------ATAGTLKVLTSTATT 3785
Query: 109 PTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQGASSA 164
PT +++ S SP A + P+ T A S P+ +A
Sbjct: 3786 PT----------VISSRATPSSSPGTATALPALRSTATTPTATSVTAIPSSSLGTA 3831
Score = 32.3 bits (72), Expect = 0.25
Identities = 36/157 (22%), Positives = 56/157 (35%), Gaps = 12/157 (7%)
Query: 27 TTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTS 86
TT + T T+T A +TP+ + + + T T S S S+
Sbjct: 4440 TTHTPTVLTTTTTTVATGSMATPSSSTQTSGTTHTPPVPNTTATTHGRSLSP-----SSP 4494
Query: 87 RRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGL---- 142
R A+ S+ + + + P+ T AA T +HS +P P S
Sbjct: 4495 HTVRTAWTSATSGTLGTTHITEPSTG--TSHTPAATTGTTQHSTPALSSPHPSSRTTESP 4552
Query: 143 -HPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVT 178
P T P H+ T ++ K L+P S T
Sbjct: 4553 PSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPT 4589
Score = 31.2 bits (69), Expect = 0.57
Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 16/159 (10%)
Query: 27 TTQMAMIRYTLTSTSAASRTSTPAKARD--GTFLAWLLSASDATTVTVAVSASSQWSFTS 84
TT A + T T+T A +TP+ + GT + + ATT ++ SS +
Sbjct: 2791 TTHTATVLTTTTTTVATGSMATPSSSTQTSGTTHTPPVPNTMATTHGRSLPPSSPHTV-- 2848
Query: 85 TSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGL-- 142
R A+ S+ ++ + + P+ T AA T +HS +P P S
Sbjct: 2849 -----RTAWTSATSGILGTTHITEPST--VTSHTLAATTGTTQHSTPALSSPHPSSRTTE 2901
Query: 143 ---HPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVT 178
P T P H+ T ++ K L+P S T
Sbjct: 2902 SPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPT 2940
Score = 28.9 bits (63), Expect = 2.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 38 TSTSAASRTSTPAKARDGTFL-AWLLSASDATTVTVAVSASSQWS 81
T+TS + T+TP+K R T L + SA T VT+ WS
Sbjct: 2915 TATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWS 2959
Score = 28.5 bits (62), Expect = 3.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 38 TSTSAASRTSTPAKARDGTFL-AWLLSASDATTVTVAVSASSQWS 81
T+TS + T+TP+K R T L + SA T VT WS
Sbjct: 4564 TATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWS 4608
Score = 28.5 bits (62), Expect = 3.7
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 1 MHELSVSCAKHRSVVYSSNVSTNRLDTTQ------------MAMIRYTLTSTSAASRTST 48
+H S H S V ++ +T R ++ + + T+T+A T+T
Sbjct: 4824 IHPSSTPETTHTSTVLTTKATTTRATSSTSTPSSTPGTTWILTELTTAATTTAATGPTAT 4883
Query: 49 PAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVL 102
P+ T W+L+ T T A + S+ ++ W + S+ V +
Sbjct: 4884 PSSTPGTT---WILTELTTTATTTASTGSTATPSSTPGTTWILTEPSTTATVTV 4934
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 34.3 bits (77), Expect = 0.067
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 15/167 (8%)
Query: 17 SSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSA 76
++N S+ T ++ T T+ +A S T TP+ A GT + + ATT ++S
Sbjct: 2706 TTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSAL-GTTHTPPVPNTTATTHGRSLSP 2764
Query: 77 SSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAP 136
SS + R A+ S+ + + + P+ T AA T +HS +P
Sbjct: 2765 SSPHTV-------RTAWTSATSGTLGTTHITEPSTG--TSHTPAATTGTTQHSTPALSSP 2815
Query: 137 SPPSGL-----HPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVT 178
P S P T P H++ T ++ K L+P S T
Sbjct: 2816 HPSSRTTESPPSPGTTTPGHTRATSRTTATATPSKTRTSTLLPSSPT 2862
Score = 33.9 bits (76), Expect = 0.087
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 17 SSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSA 76
++N S+ T ++ T T+ +A S T TP+ A GT + + ATT ++
Sbjct: 3406 TTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSAL-GTTHTPPVPNTTATTHGRSLPP 3464
Query: 77 SSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAP 136
SS + R A+ S+ ++ + + P+ T AA +T +HS +P
Sbjct: 3465 SSPHTV-------RTAWTSATSGILGTTHITEPST--VTSHTPAATTSTTQHSTPALSSP 3515
Query: 137 SPPSGL-----HPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVT 178
P S P T P H++ T ++ K L+P S T
Sbjct: 3516 HPSSRTTESPPSPGTTTPGHTRGTSRTTATATPSKTRTSTLLPSSPT 3562
Score = 33.5 bits (75), Expect = 0.11
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 15/167 (8%)
Query: 17 SSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSA 76
++N S+ T ++ T T+ +A S T TP+ A GT + + ATT ++S
Sbjct: 3963 TTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSAL-GTTHTPPVPNTTATTHGRSLSP 4021
Query: 77 SSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAP 136
SS + R A+ S+ + + + P+ T AA T +HS +P
Sbjct: 4022 SSPHTV-------RTAWTSATSGTLGTTHITEPSTG--TSHTPAATTGTTQHSTPALSSP 4072
Query: 137 SPPSGL-----HPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVT 178
P S P T P H+ T ++ K L+P S T
Sbjct: 4073 HPSSRTTESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPT 4119
Score = 32.7 bits (73), Expect = 0.19
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 1 MHELSVSCAKHRSVVYSSNVSTNRLDTTQ------------MAMIRYTLTSTSAASRTST 48
+H S H S V ++ +T R ++ + + T+T+A T+T
Sbjct: 3097 IHPSSTPETTHTSTVLTTKATTTRATSSMSTPSSTPGTTWILTELTTAATTTAATGPTAT 3156
Query: 49 PAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQS 108
P+ T W+L+ +TT TV V S + +ST A++ L VL S +
Sbjct: 3157 PSSTPGTT---WILT-EPSTTATVTVPTGSTATASSTR-------ATAGTLKVLTSTATT 3205
Query: 109 PTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQGASSA 164
PT +++ S SP A + P+ T A S P+ +A
Sbjct: 3206 PT----------VISSRATPSSSPGTATALPALRSTATTPTATSVTAIPSSSLGTA 3251
Score = 30.8 bits (68), Expect = 0.74
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 15/167 (8%)
Query: 17 SSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSA 76
++N S+ T ++ T T+ +A S T TP+ A GT + + ATT ++
Sbjct: 2149 TTNPSSTPGTTPIPPVLTTTATTPAATSNTVTPSSAL-GTTHTPPVPNTMATTHGRSLPP 2207
Query: 77 SSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAP 136
SS + R A+ S+ ++ + + P+ T AA T +HS +P
Sbjct: 2208 SSPHTV-------RTAWTSATSGILGTTHITEPST--VTSHTLAATTGTTQHSTPALSSP 2258
Query: 137 SPPSGL-----HPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVT 178
P S P T P H+ T ++ K L+P S T
Sbjct: 2259 HPSSRTTESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPT 2305
Score = 28.9 bits (63), Expect = 2.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 38 TSTSAASRTSTPAKARDGTFL-AWLLSASDATTVTVAVSASSQWS 81
T+TS + T+TP+K R T L + SA T VT+ WS
Sbjct: 2280 TATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWS 2324
Score = 28.5 bits (62), Expect = 3.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 38 TSTSAASRTSTPAKARDGTFL-AWLLSASDATTVTVAVSASSQWS 81
T+TS + T+TP+K R T L + SA T VT WS
Sbjct: 4094 TATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWS 4138
Score = 28.5 bits (62), Expect = 3.7
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 1 MHELSVSCAKHRSVVYSSNVSTNRLDTTQ------------MAMIRYTLTSTSAASRTST 48
+H S H S V ++ +T R ++ + + T+T+A T+T
Sbjct: 4354 IHPSSTPETTHTSTVLTTKATTTRATSSTSTPSSTPGTTWILTELTTAATTTAATGPTAT 4413
Query: 49 PAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVL 102
P+ T W+L+ T T A + S+ ++ W + S+ V +
Sbjct: 4414 PSSTPGTT---WILTELTTTATTTASTGSTATPSSTPGTTWILTEPSTTATVTV 4464
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 32.3 bits (72), Expect = 0.25
Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 13/142 (9%)
Query: 37 LTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTSRRW---RVAF 93
L S+S S TSTP LLS++ TT S+S+ ++++R W
Sbjct: 475 LISSSVPSTTSTPTVTSAAGLQKSLLSSTSTTTKITTGSSSAGTQSSTSNRLWAEDSTEK 534
Query: 94 ASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGLHPLNTAPAHSQ 153
V + PV N T T S + S L P+ + SQ
Sbjct: 535 EKDSVPTAVTIPVAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESESQ 594
Query: 154 R----------RQPTQGASSAD 165
R R+ TQG + D
Sbjct: 595 RKARSRQARQSRRSTQGVTLTD 616
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 32.3 bits (72), Expect = 0.25
Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 13/142 (9%)
Query: 37 LTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTSRRW---RVAF 93
L S+S S TSTP LLS++ TT S+S+ ++++R W
Sbjct: 562 LISSSVPSTTSTPTVTSAAGLQKSLLSSTSTTTKITTGSSSAGTQSSTSNRLWAEDSTEK 621
Query: 94 ASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGLHPLNTAPAHSQ 153
V + PV N T T S + S L P+ + SQ
Sbjct: 622 EKDSVPTAVTIPVAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESESQ 681
Query: 154 R----------RQPTQGASSAD 165
R R+ TQG + D
Sbjct: 682 RKARSRQARQSRRSTQGVTLTD 703
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 32.3 bits (72), Expect = 0.25
Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 13/142 (9%)
Query: 37 LTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTSRRW---RVAF 93
L S+S S TSTP LLS++ TT S+S+ ++++R W
Sbjct: 562 LISSSVPSTTSTPTVTSAAGLQKSLLSSTSTTTKITTGSSSAGTQSSTSNRLWAEDSTEK 621
Query: 94 ASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGLHPLNTAPAHSQ 153
V + PV N T T S + S L P+ + SQ
Sbjct: 622 EKDSVPTAVTIPVAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESESQ 681
Query: 154 R----------RQPTQGASSAD 165
R R+ TQG + D
Sbjct: 682 RKARSRQARQSRRSTQGVTLTD 703
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 32.0 bits (71), Expect = 0.33
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 9/152 (5%)
Query: 5 SVSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSA 64
S+S S+ S ++ +T T+TSTS ++ TST + + TF + S
Sbjct: 160 SISITSTSSISSSITSTSTSTTSTSSNSTTSTVTSTSTSTSTST-STSTSSTFTS-TTST 217
Query: 65 SDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVAT 124
S +T T + S S+ S + + A + + +S + S G
Sbjct: 218 STTSTSTTSTSTSATSSIRKLTPHQKQCGALASAFLFGLSLLVSTGTKGL-----GRSLV 272
Query: 125 TRRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQ 156
T R S PP P SG ++ AP + RQ
Sbjct: 273 TPRPSPPPPLTPQAESG--GVDAAPRAPETRQ 302
Score = 31.6 bits (70), Expect = 0.43
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 6 VSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSAS 65
+S H ++ +SN ST+ TT +TS+ S TS + + +F + S
Sbjct: 100 MSVLSHHTLHITSNSSTSSSSTTSSTSTSSFITSSFTTS-TSITSTSSTSSFTTSTATTS 158
Query: 66 DATTVTVAVSASSQWSFTSTS 86
+ ++T S SS + TSTS
Sbjct: 159 TSISITSTSSISSSITSTSTS 179
Score = 27.3 bits (59), Expect = 8.2
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 5 SVSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAAS----RTSTPAKARDGTFLAW 60
+ S S + SS ++ + +T T T+T++ S TS+ + + T +
Sbjct: 121 TTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSISSSITSTSTST 180
Query: 61 LLSASDATTVTVAVSASSQWSFTSTS 86
++S++TT TV +++S + TSTS
Sbjct: 181 TSTSSNSTTSTVTSTSTSTSTSTSTS 206
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 32.0 bits (71), Expect = 0.33
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 9/152 (5%)
Query: 5 SVSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSA 64
S+S S+ S ++ +T T+TSTS ++ TST + + TF + S
Sbjct: 160 SISITSTSSISSSITSTSTSTTSTSSNSTTSTVTSTSTSTSTST-STSTSSTFTS-TTST 217
Query: 65 SDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVAT 124
S +T T + S S+ S + + A + + +S + S G
Sbjct: 218 STTSTSTTSTSTSATSSIRKLTPHQKQCGALASAFLFGLSLLVSTGTKGL-----GRSLV 272
Query: 125 TRRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQ 156
T R S PP P SG ++ AP + RQ
Sbjct: 273 TPRPSPPPPLTPQAESG--GVDAAPRAPETRQ 302
Score = 31.6 bits (70), Expect = 0.43
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 6 VSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSAS 65
+S H ++ +SN ST+ TT +TS+ S TS + + +F + S
Sbjct: 100 MSVLSHHTLHITSNSSTSSSSTTSSTSTSSFITSSFTTS-TSITSTSSTSSFTTSTATTS 158
Query: 66 DATTVTVAVSASSQWSFTSTS 86
+ ++T S SS + TSTS
Sbjct: 159 TSISITSTSSISSSITSTSTS 179
Score = 27.3 bits (59), Expect = 8.2
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 5 SVSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAAS----RTSTPAKARDGTFLAW 60
+ S S + SS ++ + +T T T+T++ S TS+ + + T +
Sbjct: 121 TTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSISSSITSTSTST 180
Query: 61 LLSASDATTVTVAVSASSQWSFTSTS 86
++S++TT TV +++S + TSTS
Sbjct: 181 TSTSSNSTTSTVTSTSTSTSTSTSTS 206
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 32.0 bits (71), Expect = 0.33
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 12/157 (7%)
Query: 17 SSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSA 76
++N++ N T M T+T++ + S+ + A+ T L S++ VT +
Sbjct: 1711 TTNITPNPTSTGTPPM---TVTTSGTSQSRSSFSTAKTSTSLHSHTSSTHHPEVTSTSTT 1767
Query: 77 SSQWSFTSTSRRWRVAFASSRVLVVLISPVQS---PTWNGCCQLTDAAVATTRRHSWSPP 133
S + TST R VA +S L +P + PT T AT+ + + + P
Sbjct: 1768 SITPNHTSTGTRTPVAHTTSATSSRLPTPFTTHSPPTGTTPISSTGPVTATSFQTTTTYP 1827
Query: 134 CAPSPPSGLHPLNTAPAHSQRRQPTQGASSADKVVVP 170
PS HP T P H + S V++P
Sbjct: 1828 -TPS-----HPHTTLPTHVPSFSTSLVTPSTHTVIIP 1858
Score = 27.3 bits (59), Expect = 8.2
Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 11/167 (6%)
Query: 21 STNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSASSQW 80
ST T A R T ++ S A T++ A++ T + A+ T+ T+ S + +
Sbjct: 1294 STATKPTVTQATTRATASTASPA--TTSTAQSTTRTTMTLPTPATSGTSPTLPKSTNQEL 1351
Query: 81 SFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVAT------TRRHSWSPPC 134
T+ ++ + PT + T T T + SPP
Sbjct: 1352 PGTTATQTTGPRPTPASTTGPTTPQPGQPTRPTATETTQTRTTTEYTTPQTPHTTHSPPT 1411
Query: 135 APSPPSGLHPLNTAPAHSQRRQPTQGASSADKVVVPALIPGSVTLLL 181
A SP P+ H+ PT S + +P +P T L+
Sbjct: 1412 AGSPVPSTGPVTATSFHATTTYPT---PSHPETTLPTHVPPFSTSLV 1455
>gi|168229256 ankyrin repeat domain 41 [Homo sapiens]
Length = 615
Score = 32.0 bits (71), Expect = 0.33
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 64 ASDATTVTVAVSASSQWSFTSTSRRWRVAFASSR--VLVVLISPVQSPTWNGCCQLTDAA 121
+SDA+ VT AV S S + W + +R +L V+ + + P G T+A
Sbjct: 216 SSDASFVT-AVEVSGAEDPASDTPPWAGSLPPTRQGLLHVVHANQRVPRSQG----TEAE 270
Query: 122 V-ATTRRHSWSPPCAP---SPPSGLHPLNTAPAHSQRRQPTQGAS 162
+ A + + +PP A S PS + L+ +PAHS R PT GAS
Sbjct: 271 LNARLQALTLTPPNAAGFQSSPSSMPLLDRSPAHSPPRTPTPGAS 315
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sapiens]
Length = 2603
Score = 32.0 bits (71), Expect = 0.33
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 24/176 (13%)
Query: 10 KHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGT---------FLAW 60
K V SN +++ + + T+T+++S ++ P + +G+
Sbjct: 1942 KPHMVPRHSNQNSSGSQVNSAGSLTSSPTTTTSSSASTVPGTSTNGSPSSPSVRRQLFVT 2001
Query: 61 LLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNG------- 113
++ S+ATT TV +AS+ + T+ + + A V S P G
Sbjct: 2002 VVKTSNATTTTVTTTASNN-NTAPTNATYPMPTAKEHYPVSSPSSPSPPAQPGGVSRNSP 2060
Query: 114 --CCQLTDAAVATT-RRHSWSPPCAPS----PPSGLHPLNTAPAHSQRRQPTQGAS 162
C + VA++ + + SPP + PP+ ++ AHS ++QP S
Sbjct: 2061 LDCGSASPNKVASSSEQEAGSPPVVETTNTRPPNSSSSSGSSSAHSNQQQPPGSVS 2116
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sapiens]
Length = 2352
Score = 32.0 bits (71), Expect = 0.33
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 24/176 (13%)
Query: 10 KHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGT---------FLAW 60
K V SN +++ + + T+T+++S ++ P + +G+
Sbjct: 1691 KPHMVPRHSNQNSSGSQVNSAGSLTSSPTTTTSSSASTVPGTSTNGSPSSPSVRRQLFVT 1750
Query: 61 LLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNG------- 113
++ S+ATT TV +AS+ + T+ + + A V S P G
Sbjct: 1751 VVKTSNATTTTVTTTASNN-NTAPTNATYPMPTAKEHYPVSSPSSPSPPAQPGGVSRNSP 1809
Query: 114 --CCQLTDAAVATT-RRHSWSPPCAPS----PPSGLHPLNTAPAHSQRRQPTQGAS 162
C + VA++ + + SPP + PP+ ++ AHS ++QP S
Sbjct: 1810 LDCGSASPNKVASSSEQEAGSPPVVETTNTRPPNSSSSSGSSSAHSNQQQPPGSVS 1865
>gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens]
Length = 1280
Score = 30.8 bits (68), Expect = 0.74
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 78 SQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPS 137
S ++ T+T R S+ LV+L + P G Q TD+ R + S P
Sbjct: 82 SPYTETTTWERKYCILTDSQ-LVLLNKEKEIPVEGGQEQQTDSTKGRCLRRTVSVPSEGQ 140
Query: 138 ----PPSGLHPLNTAPAHSQRRQPTQGASSADKV-------VVPALIPGSVTLLLRGGMP 186
PP G L S RR+ G S+++K P +PG + L+G +
Sbjct: 141 FPEYPPEGATKLEVPAERSPRRRSISGTSTSEKPNSMDTANTSPFKVPGFFSKRLKGSIK 200
Query: 187 ASRA 190
+++
Sbjct: 201 RTKS 204
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 30.8 bits (68), Expect = 0.74
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 131 SPPCAPSPPSGLHPLNTAPAHSQRRQPTQGASSAD 165
+PP AP PP+ +HP PA S+ ++ +S D
Sbjct: 277 TPPEAPRPPATVHPEGVPPADSESKEVGSTETSQD 311
>gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Homo
sapiens]
Length = 269
Score = 30.4 bits (67), Expect = 0.97
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 115 CQLTDAAVATTRRHSWSPPCA-----PSPPSGLHPLN 146
C A A RR ++ P CA P+PPS L PLN
Sbjct: 86 CPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLN 122
>gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Homo
sapiens]
Length = 299
Score = 30.4 bits (67), Expect = 0.97
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 115 CQLTDAAVATTRRHSWSPPCA-----PSPPSGLHPLN 146
C A A RR ++ P CA P+PPS L PLN
Sbjct: 86 CPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLN 122
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 29.6 bits (65), Expect = 1.6
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 94 ASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAPSPPSGLHPLNTAPAHSQ 153
A S +++ ++ PT T AA+ T SP A S P+ P + A A S
Sbjct: 1180 AESASFAAVVATLEEPTSPAASVPTPAAMVATLEEFTSP--AASVPTSEEPASLAAAVSN 1237
Query: 154 RRQPTQGASSADKVVVP 170
+PT A++ + P
Sbjct: 1238 PEEPTSPAAAVPTLEEP 1254
>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 29.3 bits (64), Expect = 2.2
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 104 SPVQSPTWNGCCQLTDAAVATT---RRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQG 160
+P + P + G +T V + R+H W P +PS G PA + RR G
Sbjct: 196 TPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLG-EAGGERPARALRRPRAPG 254
Query: 161 ASS-----ADKVVVPALIPGSVTLLLRGGMPA 187
+ + ++ PG L GG+P+
Sbjct: 255 RAGGGGPPGGGIPACSIGPGLARLAALGGLPS 286
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 29.3 bits (64), Expect = 2.2
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 104 SPVQSPTWNGCCQLTDAAVATT---RRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQG 160
+P + P + G +T V + R+H W P +PS G PA + RR G
Sbjct: 201 TPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLG-EAGGERPARALRRPRAPG 259
Query: 161 ASS-----ADKVVVPALIPGSVTLLLRGGMPA 187
+ + ++ PG L GG+P+
Sbjct: 260 RAGGGGPPGGGIPACSIGPGLARLAALGGLPS 291
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 29.3 bits (64), Expect = 2.2
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 104 SPVQSPTWNGCCQLTDAAVATT---RRHSWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQG 160
+P + P + G +T V + R+H W P +PS G PA + RR G
Sbjct: 201 TPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLG-EAGGERPARALRRPRAPG 259
Query: 161 ASS-----ADKVVVPALIPGSVTLLLRGGMPA 187
+ + ++ PG L GG+P+
Sbjct: 260 RAGGGGPPGGGIPACSIGPGLARLAALGGLPS 291
>gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens]
Length = 1007
Score = 29.3 bits (64), Expect = 2.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 138 PPSGLHPLNTAPAHSQRRQPTQGASSADKVVVPA 171
PP+ L P T P SQ+ QP + +++PA
Sbjct: 715 PPAPLFPHETPPTQSQQTQPPVAPQAPSSILLPA 748
>gi|4504095 motilin receptor [Homo sapiens]
Length = 412
Score = 29.3 bits (64), Expect = 2.2
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 89 WRVAFASSRVLVVLISPVQSPT------WNGCCQLTDAAVATTRRHSWSPPCAPSPPSGL 142
W VA S+ + L+ Q P NG ++ + +A++ S PSPPSG
Sbjct: 163 WAVALLSAGPFLFLVGVEQDPGISVVPGLNGTARIASSPLASSPPLWLSRAPPPSPPSGP 222
Query: 143 HPLNTAPAHSQRRQPTQGASSADKVVV 169
A S+ +P+ A +V++
Sbjct: 223 ETAEAAALFSRECRPSPAQLGALRVML 249
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 28.9 bits (63), Expect = 2.8
Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 33/194 (17%)
Query: 5 SVSCAKHRSVVYSSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSA 64
+VS S V S NV+T+ ++ T ++ ++ +S +RT T + L
Sbjct: 4847 TVSAYPEPSKVTSPNVTTSTMEDTTISR---SIPKSSKTTRTETETTSS-------LTPK 4896
Query: 65 SDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLT---DAA 121
T+++ +++S++ TST + A++ V ++ S ++ G Q T D +
Sbjct: 4897 LRETSISQEITSSTE---TSTVPYKELTGATTEVSRTDVTSSSSTSFPGPDQSTVSLDIS 4953
Query: 122 VATTRRHSWSPPCAPSP---------PSG--------LHPLNTAPAHSQRRQPTQGASSA 164
T R S SP S P G + P NT P T G S
Sbjct: 4954 TETNTRLSTSPIMTESAEITITTQTGPHGATSQDTFTMDPSNTTPQAGIHSAMTHGFSQL 5013
Query: 165 DKVVVPALIPGSVT 178
D + + IP V+
Sbjct: 5014 DVTTLMSRIPQDVS 5027
>gi|239749510 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 108
Score = 28.9 bits (63), Expect = 2.8
Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 14/122 (11%)
Query: 17 SSNVSTNRLDTTQMAMIRYTLTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSA 76
++ ++ TT +I T+T T+ + T+T + + TT+T+ +
Sbjct: 1 TTTITITTTTTTTTTIITTTMTITTTITNTTT--------------TNTTTTTITITTTT 46
Query: 77 SSQWSFTSTSRRWRVAFASSRVLVVLISPVQSPTWNGCCQLTDAAVATTRRHSWSPPCAP 136
+ + T+T+ + ++ + + T +T TT PP P
Sbjct: 47 IAMTTTTTTTTTMTITTTTTMTITTTTMTTTTTTTMTTTTITSITNTTTTTTMTPPPPTP 106
Query: 137 SP 138
P
Sbjct: 107 PP 108
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 28.9 bits (63), Expect = 2.8
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 114 CCQLTDAAVATTRRHSWSPPCAPSPPSG---LHPLNTAPAHSQRRQPTQGASS 163
C + T AAV+T + +P PPSG L P + AP+ QP+ +SS
Sbjct: 817 CYRGTGAAVSTRPGPLPTTQYSPGPPSGATALPPTSAAPSAQGSPQPSASSSS 869
>gi|4507319 surfeit 1 [Homo sapiens]
Length = 300
Score = 28.5 bits (62), Expect = 3.7
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 40 TSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASSRVL 99
+SAA ++T KA D +FL W+L + + V+A ++ R+W++ +
Sbjct: 46 SSAAEASAT--KAEDDSFLQWVL-------LLIPVTAFGLGTWQVQRRKWKLNLIAELES 96
Query: 100 VVLISPVQSP 109
VL PV P
Sbjct: 97 RVLAEPVPLP 106
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 28.5 bits (62), Expect = 3.7
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Query: 37 LTSTSAASRTSTPAKARDGTFLAWLLSASDATTVTVAVSASSQWSFTSTSRRWRVAFASS 96
+T+T+ + T TP + T + +S + T T + S T TS +S
Sbjct: 1615 ITTTTTVTATPTPTGTQTPTMIP--ISTTTTVTPTPTPTTGSTGPPTHTSTAPIAELTTS 1672
Query: 97 RVLVVLISP-----VQSPTWNGCCQLTDA--AVATTRRHSWSPPCAPSPPSGLHPLN--- 146
+P SP L+ A+ T S P AP+ SG H L+
Sbjct: 1673 NPPPESSTPQTSRSTSSPLTESTTLLSTLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPP 1732
Query: 147 ---TAPAHSQRRQPTQGASSA 164
T+P + R T G+SSA
Sbjct: 1733 STTTSPPGTPTRGTTTGSSSA 1753
>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 28.5 bits (62), Expect = 3.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 129 SWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQGASSADKVVVPALIPGS 176
S+SPP PSP PL P+ + Q +G S + P L P S
Sbjct: 191 SFSPPTGPSPSLAQSPLKLFPSQA-THQLGEGESYSMPTAFPGLAPTS 237
>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 28.5 bits (62), Expect = 3.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 129 SWSPPCAPSPPSGLHPLNTAPAHSQRRQPTQGASSADKVVVPALIPGS 176
S+SPP PSP PL P+ + Q +G S + P L P S
Sbjct: 191 SFSPPTGPSPSLAQSPLKLFPSQA-THQLGEGESYSMPTAFPGLAPTS 237
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.121 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,139,514
Number of Sequences: 37866
Number of extensions: 318588
Number of successful extensions: 2294
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2148
Number of HSP's gapped (non-prelim): 160
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.