Search of human proteins with 239742176

Search of human proteins with 239742176

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742176 PREDICTED: hypothetical protein XP_002342444 [Homo
sapiens]
         (176 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753701 PREDICTED: hypothetical protein [Homo sapiens]           347   4e-96
gi|239748275 PREDICTED: hypothetical protein XP_002346602 [Homo ...   347   4e-96
gi|239742176 PREDICTED: hypothetical protein XP_002342444 [Homo ...   347   4e-96
gi|239753906 PREDICTED: hypothetical protein [Homo sapiens]            74   5e-14
gi|239748450 PREDICTED: hypothetical protein [Homo sapiens]            74   5e-14
gi|239742411 PREDICTED: hypothetical protein XP_002342509 [Homo ...    74   5e-14
gi|239756499 PREDICTED: hypothetical protein [Homo sapiens]            49   2e-06
gi|239745442 PREDICTED: hypothetical protein XP_002343468 [Homo ...    49   2e-06
gi|239755308 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003
gi|239749801 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003
gi|239744092 PREDICTED: hypothetical protein XP_002343030 [Homo ...    39   0.003
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]       34   0.057
gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens]            34   0.057
gi|210032580 SET domain containing 1B [Homo sapiens]                   32   0.22 
gi|4505101 microtubule-associated protein 7 [Homo sapiens]             32   0.37 
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]    32   0.37 
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi...    32   0.37 
gi|44955929 calmodulin regulated spectrin-associated protein 1-l...    32   0.37 
gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof...    31   0.49 
gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isofo...    31   0.49 
gi|13259508 dynactin 1 isoform 2 [Homo sapiens]                        31   0.49 
gi|13259510 dynactin 1 isoform 1 [Homo sapiens]                        31   0.49 
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H...    31   0.63 
gi|22907034 folliculin isoform 1 [Homo sapiens]                        31   0.63 
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]         31   0.63 
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]          31   0.63 
gi|206725424 hypothetical protein LOC127687 isoform 1 [Homo sapi...    30   0.83 
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]            30   1.1  
gi|14150047 solute carrier family 37 (glycerol-3-phosphate trans...    30   1.1  
gi|153791282 nuclear RNA export factor 2B [Homo sapiens]               30   1.4  

>gi|239753701 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 176

 Score =  347 bits (889), Expect = 4e-96
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MCSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHK 60
           MCSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHK
Sbjct: 1   MCSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHK 60

Query: 61  GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL 120
           GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL
Sbjct: 61  GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL 120

Query: 121 AIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQNL 176
           AIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQNL
Sbjct: 121 AIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQNL 176


>gi|239748275 PREDICTED: hypothetical protein XP_002346602 [Homo
           sapiens]
          Length = 176

 Score =  347 bits (889), Expect = 4e-96
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MCSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHK 60
           MCSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHK
Sbjct: 1   MCSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHK 60

Query: 61  GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL 120
           GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL
Sbjct: 61  GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL 120

Query: 121 AIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQNL 176
           AIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQNL
Sbjct: 121 AIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQNL 176


>gi|239742176 PREDICTED: hypothetical protein XP_002342444 [Homo
           sapiens]
          Length = 176

 Score =  347 bits (889), Expect = 4e-96
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MCSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHK 60
           MCSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHK
Sbjct: 1   MCSEFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHK 60

Query: 61  GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL 120
           GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL
Sbjct: 61  GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL 120

Query: 121 AIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQNL 176
           AIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQNL
Sbjct: 121 AIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQNL 176


>gi|239753906 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 129

 Score = 74.3 bits (181), Expect = 5e-14
 Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 6/101 (5%)

Query: 4   EFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFV------VKLQTFAVSVT 57
           EFLP  G      SGVK +TFA SVT  K    EL +PPGGFV      VKLQTFAVSVT
Sbjct: 16  EFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVLLTSGVKLQTFAVSVT 75

Query: 58  AHKGSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGA 98
           AHKG+   +    +   + +K+++  +    P+R    RGA
Sbjct: 76  AHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGA 116


>gi|239748450 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 129

 Score = 74.3 bits (181), Expect = 5e-14
 Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 6/101 (5%)

Query: 4   EFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFV------VKLQTFAVSVT 57
           EFLP  G      SGVK +TFA SVT  K    EL +PPGGFV      VKLQTFAVSVT
Sbjct: 16  EFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVLLTSGVKLQTFAVSVT 75

Query: 58  AHKGSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGA 98
           AHKG+   +    +   + +K+++  +    P+R    RGA
Sbjct: 76  AHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGA 116


>gi|239742411 PREDICTED: hypothetical protein XP_002342509 [Homo
           sapiens]
          Length = 129

 Score = 74.3 bits (181), Expect = 5e-14
 Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 6/101 (5%)

Query: 4   EFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFV------VKLQTFAVSVT 57
           EFLP  G      SGVK +TFA SVT  K    EL +PPGGFV      VKLQTFAVSVT
Sbjct: 16  EFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVLLTSGVKLQTFAVSVT 75

Query: 58  AHKGSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGA 98
           AHKG+   +    +   + +K+++  +    P+R    RGA
Sbjct: 76  AHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGA 116


>gi|239756499 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 110

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 29/50 (58%), Positives = 31/50 (62%), Gaps = 6/50 (12%)

Query: 39 FVPPGGFVV------KLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSS 82
          F+P G FVV      KLQ F+ SVTAHK S DP SEQQQ L Q  KE  S
Sbjct: 17 FLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQNRKELPS 66


>gi|239745442 PREDICTED: hypothetical protein XP_002343468 [Homo
          sapiens]
          Length = 110

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 29/50 (58%), Positives = 31/50 (62%), Gaps = 6/50 (12%)

Query: 39 FVPPGGFVV------KLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSS 82
          F+P G FVV      KLQ F+ SVTAHK S DP SEQQQ L Q  KE  S
Sbjct: 17 FLPSGEFVVSLTSRGKLQNFSASVTAHKRSADPTSEQQQYLSQNRKELPS 66


>gi|239755308 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 77

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 20/29 (68%), Positives = 22/29 (75%), Gaps = 6/29 (20%)

Query: 39 FVPPGGFVV------KLQTFAVSVTAHKG 61
          F+P GGF+V      KLQTFAVSVTAHKG
Sbjct: 17 FLPSGGFLVSLTSRVKLQTFAVSVTAHKG 45



 Score = 36.2 bits (82), Expect = 0.015
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 2  CSEFLPSGGLRGLAGSGVKPRTFAASVTAPK 32
          C+EFLPSGG      S VK +TFA SVTA K
Sbjct: 14 CAEFLPSGGFLVSLTSRVKLQTFAVSVTAHK 44


>gi|239749801 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 77

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 20/29 (68%), Positives = 22/29 (75%), Gaps = 6/29 (20%)

Query: 39 FVPPGGFVV------KLQTFAVSVTAHKG 61
          F+P GGF+V      KLQTFAVSVTAHKG
Sbjct: 17 FLPSGGFLVSLTSRVKLQTFAVSVTAHKG 45



 Score = 36.2 bits (82), Expect = 0.015
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 2  CSEFLPSGGLRGLAGSGVKPRTFAASVTAPK 32
          C+EFLPSGG      S VK +TFA SVTA K
Sbjct: 14 CAEFLPSGGFLVSLTSRVKLQTFAVSVTAHK 44


>gi|239744092 PREDICTED: hypothetical protein XP_002343030 [Homo
          sapiens]
          Length = 77

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 20/29 (68%), Positives = 22/29 (75%), Gaps = 6/29 (20%)

Query: 39 FVPPGGFVV------KLQTFAVSVTAHKG 61
          F+P GGF+V      KLQTFAVSVTAHKG
Sbjct: 17 FLPSGGFLVSLTSRVKLQTFAVSVTAHKG 45



 Score = 36.2 bits (82), Expect = 0.015
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 2  CSEFLPSGGLRGLAGSGVKPRTFAASVTAPK 32
          C+EFLPSGG      S VK +TFA SVTA K
Sbjct: 14 CAEFLPSGGFLVSLTSRVKLQTFAVSVTAHK 44


>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
          Length = 748

 Score = 34.3 bits (77), Expect = 0.057
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 63  VDPKSEQQQDLLQRVK--EQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSL 120
           V P+ +QQQ  +Q  +  +  +  V+   S LP+L      +QV  +P  +P  P QPS 
Sbjct: 359 VQPQVQQQQTAVQTAQAAQMVAPGVQVSQSSLPMLSSPSPGQQV-QTPQSMP-PPPQPSP 416

Query: 121 AIARPASEDASSEASLDTPLPLRVKRIPS 149
              +P+S+  S+ +S   P P      PS
Sbjct: 417 QPGQPSSQPNSNVSSGPAPSPSSFLPSPS 445


>gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens]
          Length = 970

 Score = 34.3 bits (77), Expect = 0.057
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 66  KSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGAS----------PLHLPGAP 115
           K  QQQ+ L+ +++ +    + D  +LPL    R S +              P  +  AP
Sbjct: 505 KIRQQQEKLEALQKTTPIRSQADLKKLPLEVTTRPSTEEPVRRPQRPRSPPLPAVIRNAP 564

Query: 116 AQ-PSLAIARPASEDASSEASLDTP-LPLRVKRIPSGPFRLLAPSHSLQKNLATL 168
           ++ PSL   RPAS+   +     TP LP    R  +   RLL P  + +K   TL
Sbjct: 565 SRPPSLPTPRPASQPRKAPVISSTPKLPALAAREEASTSRLLQPPEAPRKPANTL 619


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 21/84 (25%), Positives = 34/84 (40%)

Query: 67   SEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSLAIARPA 126
            SE +++++ R +E+     E          G  + EQ G      PGAPA  SL +    
Sbjct: 1132 SEDEEEVVAREEEEEEEEEEMVAEESMASAGPEDFEQDGEEAALAPGAPAVDSLGMEEEV 1191

Query: 127  SEDASSEASLDTPLPLRVKRIPSG 150
              +  + A  + P  L    +P G
Sbjct: 1192 DIETEAVAPEERPSMLDEPPLPVG 1215


>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
          Length = 749

 Score = 31.6 bits (70), Expect = 0.37
 Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 24/178 (13%)

Query: 5   FLPSGGLRGLAGSGVKPRTFAAS---VTAPKAAHLE------LFVPPGGFVVKLQTFAVS 55
           FL SG  R ++ S  K R  A S   + +    HL         +PPG   VK     V 
Sbjct: 305 FLTSGTRRAVSPSNPKARQPARSRLWLPSKSLPHLPGTPRPTSSLPPGS--VKAAPAQVR 362

Query: 56  VTAHKGSVDP-KSEQQQDLLQRVKEQSSHSVEWDPS---RLPLLR--GARESEQVGASPL 109
             +  G++ P K E + +  ++  E+    V  +PS   R PL++   A   E+  A P 
Sbjct: 363 PPS-PGNIRPVKREVKVEPEKKDPEKEPQKVANEPSLKGRAPLVKVEEATVEERTPAEPE 421

Query: 110 HLPGAPAQPSLAIARPASEDASSEASLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLAT 167
             P APA        PA   A + AS   P P+    + S P   +  S S++ +  T
Sbjct: 422 VGPAAPAM------APAPASAPAPASAPAPAPVPTPAMVSAPSSTVNASASVKTSAGT 473


>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
          Length = 1484

 Score = 31.6 bits (70), Expect = 0.37
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 61  GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPL---HLPGAPAQ 117
           GSV  +S   QD + +   +SS +    P ++P +  A  +   G SP+     P AP  
Sbjct: 421 GSVGRRSRLAQDFMAQCLRESSPAARPSPEKVPPVLPAPLTPH-GTSPVGPPTPPPAPTD 479

Query: 118 PSLAIARPASEDAS 131
           P L  AR   ED S
Sbjct: 480 PQLTKARKQEEDDS 493


>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
           sapiens]
          Length = 1554

 Score = 31.6 bits (70), Expect = 0.37
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 61  GSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPL---HLPGAPAQ 117
           GSV  +S   QD + +   +SS +    P ++P +  A  +   G SP+     P AP  
Sbjct: 491 GSVGRRSRLAQDFMAQCLRESSPAARPSPEKVPPVLPAPLTPH-GTSPVGPPTPPPAPTD 549

Query: 118 PSLAIARPASEDAS 131
           P L  AR   ED S
Sbjct: 550 PQLTKARKQEEDDS 563


>gi|44955929 calmodulin regulated spectrin-associated protein 1-like 1
            [Homo sapiens]
          Length = 1478

 Score = 31.6 bits (70), Expect = 0.37
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 70   QQDLLQRVKEQSSHSVEW-DPSRLPLLRGARESEQVGASPLHLPGAPAQPSLAIARPASE 128
            QQ++L +++EQ S  +    PS    +R  + S+Q G S    P +   P      P S 
Sbjct: 904  QQEMLMQMREQQSWVISPPQPSPQKQIRDFKPSKQAGLSSAIAPFSSDSPRPTHPSPQSS 963

Query: 129  DASSEA----SLDTPLPLRVKRIPSGPFRLLAPSHSLQKNLATLRFLADQ 174
            +  S +    S  TP P  +K  P    R L P  S+       RF   Q
Sbjct: 964  NRKSASFSVKSQRTPRPNELKITPLN--RTLTPPRSVDSLPRLRRFSPSQ 1011


>gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform
           2 [Homo sapiens]
          Length = 1562

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 29  TAPKAAHLELFVPPGGFVVKLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSSHSVEWD 88
           +AP    L  ++   G  ++L+    S TA K    P  ++      + K+ S+   E D
Sbjct: 509 SAPMDFALNTYMSHAG--IRLREARPSNTAEKAQSAPDKDKWLPFFPKTKKSSNSKKEKD 566

Query: 89  P----SRLPLLRGARESEQVGASPLHLPGAPAQPSLAIARPASEDASSEASLDTPLPLRV 144
                 R P+L+   + +    S  H+P +P +      R   +   +    D P P   
Sbjct: 567 ALEDKKRNPILKYIGKPKSSSQSTFHIPLSPVEVKPGNVRNIIQHFENNQQYDAPEP-GT 625

Query: 145 KRIPSGPF 152
           +R+ +G F
Sbjct: 626 QRLSTGSF 633


>gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isoform
           1 [Homo sapiens]
          Length = 1522

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 29  TAPKAAHLELFVPPGGFVVKLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSSHSVEWD 88
           +AP    L  ++   G  ++L+    S TA K    P  ++      + K+ S+   E D
Sbjct: 469 SAPMDFALNTYMSHAG--IRLREARPSNTAEKAQSAPDKDKWLPFFPKTKKSSNSKKEKD 526

Query: 89  P----SRLPLLRGARESEQVGASPLHLPGAPAQPSLAIARPASEDASSEASLDTPLPLRV 144
                 R P+L+   + +    S  H+P +P +      R   +   +    D P P   
Sbjct: 527 ALEDKKRNPILKYIGKPKSSSQSTFHIPLSPVEVKPGNVRNIIQHFENNQQYDAPEP-GT 585

Query: 145 KRIPSGPF 152
           +R+ +G F
Sbjct: 586 QRLSTGSF 593


>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
          Length = 1144

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 48  KLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSSHSVEW----DPSRLPLLRG--ARES 101
           K + F  ++ A +  +D    ++ +L QR+  QS  ++E      PS +  L    A E 
Sbjct: 874 KEKEFEETMDALQADIDQLEAEKAELKQRLNSQSKRTIEGLRGPPPSGIATLVSGIAGEE 933

Query: 102 EQVGASPLHLPGAPAQPSLAIARP 125
           +Q GA P   PG+   P L    P
Sbjct: 934 QQRGAIPGQAPGSVPGPGLVKDSP 957


>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
          Length = 1278

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 48   KLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSSHSVEW----DPSRLPLLRG--ARES 101
            K + F  ++ A +  +D    ++ +L QR+  QS  ++E      PS +  L    A E 
Sbjct: 1008 KEKEFEETMDALQADIDQLEAEKAELKQRLNSQSKRTIEGLRGPPPSGIATLVSGIAGEE 1067

Query: 102  EQVGASPLHLPGAPAQPSLAIARP 125
            +Q GA P   PG+   P L    P
Sbjct: 1068 QQRGAIPGQAPGSVPGPGLVKDSP 1091


>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
            sapiens]
          Length = 1251

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 20   KPRTFAASVTAPKAAHLELFVPPGGFVVKLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKE 79
            K R    S   PK     L +PP     KL   A+++T   G    K  +   L  R+KE
Sbjct: 1079 KARRMLRSNNKPKEEKSVLILPPRAGTPKLFNAALAMTGKMGGKGAKGGKLAHLRARLKE 1138

Query: 80   QSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSLAIARPASEDASSEASLDTP 139
             +  ++E    +  L+  A+ S+ V                  A P       EA+ D P
Sbjct: 1139 LA--ALEAAAKQQELVEQAKSSQDVKGEE------------GSAAPDQHTHPKEAATDPP 1184

Query: 140  LPLRVKRIPSGP 151
             P      P  P
Sbjct: 1185 APRTPPEPPGSP 1196


>gi|22907034 folliculin isoform 1 [Homo sapiens]
          Length = 579

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 60  KGSVDPKSEQQQDLLQRVKEQSSHSV--EWDPSRLPLLRGARESEQVGASP 108
           K  V P+S + ++L Q   E SS S    W P +LP+ +  R   QV  +P
Sbjct: 309 KAPVLPESTEGRELTQGPAESSSLSGCGSWQPRKLPVFKSLRHMRQVLGAP 359


>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
          Length = 973

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 104 VGASPLHLPGAPAQPSLAIARPAS----EDASSEASLDTPLPLRVKRIPSGPFR 153
           +  +PL  PGAPA    A A  A+     DASS A   TP       +P G  R
Sbjct: 354 IAITPLAAPGAPATSPFAAAAAAAALGGADASSPAGAGTPEAGATSLVPEGAAR 407


>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
          Length = 1070

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 104 VGASPLHLPGAPAQPSLAIARPAS----EDASSEASLDTPLPLRVKRIPSGPFR 153
           +  +PL  PGAPA    A A  A+     DASS A   TP       +P G  R
Sbjct: 354 IAITPLAAPGAPATSPFAAAAAAAALGGADASSPAGAGTPEAGATSLVPEGAAR 407


>gi|206725424 hypothetical protein LOC127687 isoform 1 [Homo
           sapiens]
          Length = 110

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 65  PKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLR--GARESEQVGASPLHL-PGAPAQPSLA 121
           P+ E+ Q LL  V+++    ++   +   +LR  G R  E  G   +   PGAP QP+++
Sbjct: 35  PREERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNVSAKPGAPPQPAVS 94

Query: 122 IARPASEDASSEAS 135
                 +DA   A+
Sbjct: 95  ARGGFPKDAGDGAA 108


>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
          Length = 1352

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 77   VKEQSSHSVEWDPSRLPLLRG----------ARESEQVGASPLHLPGAPAQPSLAIARPA 126
            V  QS HS + D  RLP L G            +S+ V +SP+    AP+ P     +P 
Sbjct: 963  VDTQSKHSAQGD--RLPPLSGPFDNNNQIAYVDQSDSVDSSPVKEVKAPSHPGSLAKKPE 1020

Query: 127  SEDASSEASLDTPLP 141
            S    S +S  T  P
Sbjct: 1021 STTKRSPSSKGTSEP 1035



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 42   PGGFVVKLQTFAVSVTAHKGSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGARES 101
            PG    K ++      + KG+ +P+   ++       ++SS S     S LP+    + S
Sbjct: 1012 PGSLAKKPESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLKPS 1071

Query: 102  EQVGASPLHLPGAPAQPSLAIARPASEDA-SSEASLDTPLPLRVK 145
                 +     G+    S A A+P  E +  S+ S+ +P P + K
Sbjct: 1072 RSRSKADSSSRGSGRHSSPAPAQPKKESSPKSQDSVSSPSPQKQK 1116


>gi|14150047 solute carrier family 37 (glycerol-3-phosphate
           transporter), member 3 isoform 2 [Homo sapiens]
          Length = 443

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 72  DLLQRVKEQSSHSVEWDPSRLPLLRGARESEQVGASPLHLPGAPAQPSLAIARPASEDAS 131
           ++L R KE  SH        +  + GARE+E+  ++     G    P+L ++R +S    
Sbjct: 379 NILSRAKETGSH--------IEGVTGARETERTMSATSGPLGLRVCPNLGLSRSSSLILD 430

Query: 132 SEASLDTPLPLR 143
            +ASL+T   LR
Sbjct: 431 CQASLNTASHLR 442


>gi|153791282 nuclear RNA export factor 2B [Homo sapiens]
          Length = 626

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 22  RTFAASVTAPKAAHL---ELFVPPGGFVVKLQTFAVSVTAHKGSVDPK-SEQQQDLLQRV 77
           RTF A+  +  +  +   ELFV           F++ V+    S +P  S++QQ+++Q  
Sbjct: 520 RTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAF 579

Query: 78  KEQSSHSVEW 87
             QS   +EW
Sbjct: 580 SAQSGMKLEW 589


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,548,095
Number of Sequences: 37866
Number of extensions: 379315
Number of successful extensions: 1428
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 139
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.