Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292822 Sequence: fasta or formatted (110aa) NCBI GI: 239756499
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          5           1
 C cysteine            0.9          1           1
 D aspartate           1.8          2           1
 E glutamate           3.6          4           1
 F phenylalanine       8.2          9           1
 G glycine             8.2          9           1
 H histidine           1.8          2           1
 I isoleucine          4.5          5           1
 K lysine              2.7          3           1
 L leucine            10.9         12           2
 M methionine          1.8          2           1
 N asparagine          1.8          2           1
 P proline            10.0         11           1
 Q glutamine           5.5          6           3
 R arginine            5.5          6           1
 S serine              9.1         10           1
 T threonine           4.5          5           1
 V valine              8.2          9           2
 W tryptophan          1.8          2           1
 Y tyrosine            4.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288502          1.000   PREDICTED: hypothetical protein XP_002343468 
LOC100292494          0.172   PREDICTED: hypothetical protein 
LOC100288126          0.172   PREDICTED: hypothetical protein 
LOC100288126          0.172   PREDICTED: hypothetical protein XP_002343030 
LOC100292609          0.142   PREDICTED: hypothetical protein 
LOC100289626          0.142   PREDICTED: hypothetical protein 
LOC100289626          0.142   PREDICTED: hypothetical protein XP_002342509 
LOC100292232          0.118   PREDICTED: hypothetical protein 
LOC100291519          0.118   PREDICTED: hypothetical protein XP_002346602 
LOC100287133          0.118   PREDICTED: hypothetical protein XP_002342444 
ZNF773                0.010   zinc finger protein 773 
SMAD2                 0.010   Sma- and Mad-related protein 2 isoform 2 
SMAD3                 0.005   mothers against decapentaplegic homolog 3 isoform 1 [...
ZNF506                0.005   zinc finger protein 506 isoform 1 
ZNF506                0.005   zinc finger protein 506 isoform 2 
LOC285556             0.005   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.005   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.005   PREDICTED: hypothetical protein LOC285556 
ZNF91                 0.005   zinc finger protein 91 
DCHS1                 0.005   dachsous 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press