Guide to the Human Genome
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Name: LOC100287133 Sequence: fasta or formatted (176aa) NCBI GI: 239742176
Description:

PREDICTED: hypothetical protein XP_002342444

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         20           2
 C cysteine            0.6          1           1
 D aspartate           3.4          6           1
 E glutamate           5.1          9           1
 F phenylalanine       4.0          7           1
 G glycine             6.8         12           2
 H histidine           2.8          5           1
 I isoleucine          1.1          2           1
 K lysine              4.5          8           1
 L leucine            13.6         24           2
 M methionine          0.6          1           1
 N asparagine          1.1          2           1
 P proline            10.2         18           2
 Q glutamine           5.7         10           3
 R arginine            6.2         11           1
 S serine             11.9         21           2
 T threonine           3.4          6           1
 V valine              6.8         12           2
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342444 
LOC100292232          1.000   PREDICTED: hypothetical protein 
LOC100291519          1.000   PREDICTED: hypothetical protein XP_002346602 
LOC100292609          0.152   PREDICTED: hypothetical protein 
LOC100289626          0.152   PREDICTED: hypothetical protein 
LOC100289626          0.152   PREDICTED: hypothetical protein XP_002342509 
LOC100292822          0.075   PREDICTED: hypothetical protein 
LOC100288502          0.075   PREDICTED: hypothetical protein XP_002343468 
LOC100292494          0.043   PREDICTED: hypothetical protein 
LOC100288126          0.043   PREDICTED: hypothetical protein 
LOC100288126          0.043   PREDICTED: hypothetical protein XP_002343030 
MED15                 0.028   mediator complex subunit 15 isoform b 
MORC2                 0.028   MORC family CW-type zinc finger 2 
SETD1B                0.022   SET domain containing 1B 
MAP7                  0.022   microtubule-associated protein 7 
KIAA0284              0.022   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.022   hypothetical protein LOC283638 isoform 1 
CAMSAP1L1             0.022   calmodulin regulated spectrin-associated protein 1-l...
ARHGEF11              0.019   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.019   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
DCTN1                 0.019   dynactin 1 isoform 2 
DCTN1                 0.019   dynactin 1 isoform 1 
CNGB1                 0.019   cyclic nucleotide gated channel beta 1 isoform a [H...
FLCN                  0.019   folliculin isoform 1 
PCDH8                 0.019   protocadherin 8 isoform 2 precursor 
PCDH8                 0.019   protocadherin 8 isoform 1 precursor 
C1orf122              0.016   hypothetical protein LOC127687 isoform 1 
USP31                 0.016   ubiquitin specific peptidase 31 
SLC37A3               0.016   solute carrier family 37 (glycerol-3-phosphate trans...
NXF2B                 0.016   nuclear RNA export factor 2B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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