Guide to the Human Genome
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Name: LOC100288126 Sequence: fasta or formatted (77aa) NCBI GI: 239749801
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {77aa} PREDICTED: hypothetical protein XP_002343030
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          5           2
 C cysteine            2.6          2           1
 D aspartate           2.6          2           1
 E glutamate           5.2          4           1
 F phenylalanine       7.8          6           1
 G glycine             9.1          7           2
 H histidine           2.6          2           1
 I isoleucine          0.0          0           0
 K lysine              2.6          2           1
 L leucine             9.1          7           2
 M methionine          1.3          1           1
 N asparagine          0.0          0           0
 P proline             5.2          4           1
 Q glutamine           1.3          1           1
 R arginine            7.8          6           1
 S serine             16.9         13           2
 T threonine           5.2          4           1
 V valine             13.0         10           2
 W tryptophan          1.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292494          1.000   PREDICTED: hypothetical protein 
LOC100288126          1.000   PREDICTED: hypothetical protein XP_002343030 
LOC100292609          0.369   PREDICTED: hypothetical protein 
LOC100289626          0.369   PREDICTED: hypothetical protein 
LOC100289626          0.369   PREDICTED: hypothetical protein XP_002342509 
LOC100292822          0.269   PREDICTED: hypothetical protein 
LOC100288502          0.269   PREDICTED: hypothetical protein XP_002343468 
LOC100292232          0.092   PREDICTED: hypothetical protein 
LOC100291519          0.092   PREDICTED: hypothetical protein XP_002346602 
LOC100287133          0.092   PREDICTED: hypothetical protein XP_002342444 
SLC2A14               0.038   glucose transporter 14 
CRAT                  0.023   carnitine acetyltransferase precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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