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Search of human proteins with 239742084
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742084 PREDICTED: hypothetical protein XP_002342433 [Homo
sapiens]
(124 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169166055 PREDICTED: hypothetical protein [Homo sapiens] 282 4e-77
gi|239742084 PREDICTED: hypothetical protein XP_002342433 [Homo ... 282 4e-77
gi|33286436 gametogenetin [Homo sapiens] 38 0.002
gi|217330658 hypothetical protein LOC9812 [Homo sapiens] 37 0.005
gi|217330656 hypothetical protein LOC9812 [Homo sapiens] 37 0.005
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 33 0.056
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 33 0.056
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 33 0.056
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 33 0.073
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s... 33 0.073
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 33 0.073
gi|55741655 anoctamin 8 [Homo sapiens] 32 0.096
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 32 0.096
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 32 0.096
gi|30794372 polybromo 1 isoform 1 [Homo sapiens] 32 0.096
gi|93102371 polybromo 1 isoform 2 [Homo sapiens] 32 0.096
gi|41281917 polybromo 1 isoform 4 [Homo sapiens] 32 0.096
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 32 0.12
gi|56549694 enabled homolog isoform a [Homo sapiens] 32 0.12
gi|39930375 enabled homolog isoform b [Homo sapiens] 32 0.12
gi|169165478 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|169165887 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|169165071 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 32 0.16
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 32 0.16
gi|44771211 mediator complex subunit 13-like [Homo sapiens] 32 0.16
gi|24497515 homeobox A3 isoform b [Homo sapiens] 31 0.21
gi|24497513 homeobox A3 isoform a [Homo sapiens] 31 0.21
gi|13562112 homeobox A3 isoform a [Homo sapiens] 31 0.21
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 31 0.21
>gi|169166055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 282 bits (722), Expect = 4e-77
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MPLLTWPEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRV 60
MPLLTWPEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRV
Sbjct: 1 MPLLTWPEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRV 60
Query: 61 PTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDPLF 120
PTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDPLF
Sbjct: 61 PTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDPLF 120
Query: 121 PGDT 124
PGDT
Sbjct: 121 PGDT 124
>gi|239742084 PREDICTED: hypothetical protein XP_002342433 [Homo
sapiens]
Length = 124
Score = 282 bits (722), Expect = 4e-77
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MPLLTWPEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRV 60
MPLLTWPEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRV
Sbjct: 1 MPLLTWPEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRV 60
Query: 61 PTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDPLF 120
PTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDPLF
Sbjct: 61 PTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDPLF 120
Query: 121 PGDT 124
PGDT
Sbjct: 121 PGDT 124
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 37.7 bits (86), Expect = 0.002
Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 22/104 (21%)
Query: 10 GGGDQEAEEQTAG-TGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPAR----WRVPTQG 64
GGG + A +GP G PPP + +H+A G P PA+ A + PT G
Sbjct: 370 GGGIGAPRRRAAALSGPWGSPPPPP-----EQIHSAPGPRRPAPALLAPPTFIFPAPTNG 424
Query: 65 QRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGP 108
+ + P P LP PPTPPP+ PA P
Sbjct: 425 EPMRPGPPG-------LQELPPLP-----PPTPPPTLQPPALQP 456
>gi|217330658 hypothetical protein LOC9812 [Homo sapiens]
Length = 515
Score = 36.6 bits (83), Expect = 0.005
Identities = 26/61 (42%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 58 WRVPTQGQRLLPDTPSPGLWRCTFGSL----PHATFHHAMPPTPPPSRSTPAHGPFGCSS 113
WR+P R LP T P LWR T S P T + P P RS P HGP G S
Sbjct: 2 WRLPGLLGRALPRTLGPSLWRVTPKSTSPDGPQTTSSTLLVPVPNLDRSGP-HGP-GTSG 59
Query: 114 G 114
G
Sbjct: 60 G 60
>gi|217330656 hypothetical protein LOC9812 [Homo sapiens]
Length = 515
Score = 36.6 bits (83), Expect = 0.005
Identities = 26/61 (42%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 58 WRVPTQGQRLLPDTPSPGLWRCTFGSL----PHATFHHAMPPTPPPSRSTPAHGPFGCSS 113
WR+P R LP T P LWR T S P T + P P RS P HGP G S
Sbjct: 2 WRLPGLLGRALPRTLGPSLWRVTPKSTSPDGPQTTSSTLLVPVPNLDRSGP-HGP-GTSG 59
Query: 114 G 114
G
Sbjct: 60 G 60
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 33.1 bits (74), Expect = 0.056
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 52 PAVP-----ARWRVPTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRST--- 103
PA P A R P Q + P P+PG GSLP A + P PPSR
Sbjct: 108 PAAPPSSPHAPTRPPPQAVQPRPSEPTPGSEALPPGSLPEAAQPPSRPAAQPPSRPAFRS 167
Query: 104 --PAHGP 108
P GP
Sbjct: 168 PRPVRGP 174
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.1 bits (74), Expect = 0.056
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 52 PAVPARWRVPTQGQRLLPDTPSPGLW---RCTFGSLPHATFHHAMPPTPPPSRSTPAH-- 106
P+ P R+ VP+ G R P P R GS P + +P TP P +S+P +
Sbjct: 144 PSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPD-SIPPPVPSTPRPIQSSPHNRG 202
Query: 107 ------GPFGCSSGDNDPLFPGD 123
GP S G P FPG+
Sbjct: 203 SPPVPGGPRQPSPGPTPPPFPGN 225
Score = 32.0 bits (71), Expect = 0.12
Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 22/91 (24%)
Query: 31 PPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGSLPHATFH 90
PPP +H VP P P + +P TP P +
Sbjct: 267 PPPPVGNRPSIHREA---VPPPP-------PQNNKPPVPSTPRP------------SASS 304
Query: 91 HAMPPTPPPSRSTPAHGPFGCSSGDNDPLFP 121
A PP PPPSR P P S D P P
Sbjct: 305 QAPPPPPPPSRPGPPPLPPSSSGNDETPRLP 335
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.1 bits (74), Expect = 0.056
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 52 PAVPARWRVPTQGQRLLPDTPSPGLW---RCTFGSLPHATFHHAMPPTPPPSRSTPAH-- 106
P+ P R+ VP+ G R P P R GS P + +P TP P +S+P +
Sbjct: 144 PSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPD-SIPPPVPSTPRPIQSSPHNRG 202
Query: 107 ------GPFGCSSGDNDPLFPGD 123
GP S G P FPG+
Sbjct: 203 SPPVPGGPRQPSPGPTPPPFPGN 225
Score = 32.0 bits (71), Expect = 0.12
Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 22/91 (24%)
Query: 31 PPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGSLPHATFH 90
PPP +H VP P P + +P TP P +
Sbjct: 267 PPPPVGNRPSIHREA---VPPPP-------PQNNKPPVPSTPRP------------SASS 304
Query: 91 HAMPPTPPPSRSTPAHGPFGCSSGDNDPLFP 121
A PP PPPSR P P S D P P
Sbjct: 305 QAPPPPPPPSRPGPPPLPPSSSGNDETPRLP 335
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 32.7 bits (73), Expect = 0.073
Identities = 33/103 (32%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 10 GGGDQEAEEQTAGTG----PLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQ 65
GGGD + AG G P G H PPP G A G + G P RV
Sbjct: 102 GGGDFDYPGAPAGPGGAVMPGGAHGPPP------GYGCAAAGYLDGRLEPLYERVGAPAL 155
Query: 66 RLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGP 108
R L P F + PP PPPS P H P
Sbjct: 156 RPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPSHPHP-HPP 197
>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
sapiens]
Length = 468
Score = 32.7 bits (73), Expect = 0.073
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 48 VVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPP--------TPPP 99
VVP PA P PT G P PSP L +P A+ P PP
Sbjct: 9 VVPPPARPC----PTSGPPAGPCPPSPDL----IYKIPRASGTQLAAPRDALEVYDVPPT 60
Query: 100 SRSTPAHGPFGCSSGDNDPL 119
+ P+ GP+ C + + PL
Sbjct: 61 ALRVPSSGPYDCPASFSHPL 80
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 32.7 bits (73), Expect = 0.073
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 48 VVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPP--------TPPP 99
VVP PA P PT G P PSP L +P A+ P PP
Sbjct: 102 VVPPPARPC----PTSGPPAGPCPPSPDL----IYKIPRASGTQLAAPRDALEVYDVPPT 153
Query: 100 SRSTPAHGPFGCSSGDNDPL 119
+ P+ GP+ C + + PL
Sbjct: 154 ALRVPSSGPYDCPASFSHPL 173
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 32.3 bits (72), Expect = 0.096
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 31 PPPSWWATDGVHAAGG-GVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGSLPHATF 89
PP W DG GG G P A+ A P P P P LP
Sbjct: 1144 PPAGCWQWDGPWGCGGEGAAPRQALAAA-ECPPCAMAGPPPAPQP---------LPGDAS 1193
Query: 90 HHAMPPTPPPSRSTPAHGPFGCSSGDNDP 118
+++PP P P S P P S P
Sbjct: 1194 FYSLPPPPLPPTSDPLETPAPSPSPSPSP 1222
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 32.3 bits (72), Expect = 0.096
Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 4/113 (3%)
Query: 9 DGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQRLL 68
+G Q G GP G +P G AG G P P + V T
Sbjct: 216 NGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFP 275
Query: 69 PDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDPLFP 121
P P +G+ P +F + PP PP + P P + G FP
Sbjct: 276 PPQGFPQ----GYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFP 324
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 32.3 bits (72), Expect = 0.096
Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 4/113 (3%)
Query: 9 DGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQRLL 68
+G Q G GP G +P G AG G P P + V T
Sbjct: 216 NGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFP 275
Query: 69 PDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDPLFP 121
P P +G+ P +F + PP PP + P P + G FP
Sbjct: 276 PPQGFPQ----GYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFP 324
>gi|30794372 polybromo 1 isoform 1 [Homo sapiens]
Length = 1602
Score = 32.3 bits (72), Expect = 0.096
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 2 PLLTWPEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVP 61
P++ P GG +Q GP G PPP G H AG V+ P P P
Sbjct: 1458 PMVGTPAPGGSPYG--QQVGVLGPPGQQAPPPY----PGPHPAGPPVIQQPTTPMFVAPP 1511
Query: 62 TQGQRLL 68
+ QRLL
Sbjct: 1512 PKTQRLL 1518
>gi|93102371 polybromo 1 isoform 2 [Homo sapiens]
Length = 1582
Score = 32.3 bits (72), Expect = 0.096
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 2 PLLTWPEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVP 61
P++ P GG +Q GP G PPP G H AG V+ P P P
Sbjct: 1438 PMVGTPAPGGSPYG--QQVGVLGPPGQQAPPPY----PGPHPAGPPVIQQPTTPMFVAPP 1491
Query: 62 TQGQRLL 68
+ QRLL
Sbjct: 1492 PKTQRLL 1498
>gi|41281917 polybromo 1 isoform 4 [Homo sapiens]
Length = 1582
Score = 32.3 bits (72), Expect = 0.096
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 2 PLLTWPEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVP 61
P++ P GG +Q GP G PPP G H AG V+ P P P
Sbjct: 1438 PMVGTPAPGGSPYG--QQVGVLGPPGQQAPPPY----PGPHPAGPPVIQQPTTPMFVAPP 1491
Query: 62 TQGQRLL 68
+ QRLL
Sbjct: 1492 PKTQRLL 1498
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 32.0 bits (71), Expect = 0.12
Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 25/115 (21%)
Query: 9 DGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGG---GVVPGPAVPARWRVPTQGQ 65
D G + AEE FH W +T G + P PA PAR P G+
Sbjct: 51 DPGSPRGAEEPGKKRHERLFHRQDALWISTSSAGTGGAEPPALSPAPASPARPVSPAPGR 110
Query: 66 RLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRS-TPAHGPFGCSSGDNDPL 119
RL LW A+PP PP S +P P G + PL
Sbjct: 111 RL-------SLW--------------AVPPGPPLSGGLSPDPKPGGAPTSSRRPL 144
Score = 26.6 bits (57), Expect = 5.2
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 7 PEDGGGDQEAEEQTAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQR 66
P GG + + A T + PSW + AGGG +PG + P P G R
Sbjct: 122 PLSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRAGGG-IPGSSSPH----PGTGSR 176
Query: 67 LLPDTPSP 74
L P P
Sbjct: 177 RLKVAPPP 184
>gi|56549694 enabled homolog isoform a [Homo sapiens]
Length = 591
Score = 32.0 bits (71), Expect = 0.12
Identities = 33/97 (34%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 24 GPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGS 83
GPL PPP G A + P P P +P+ G P P P
Sbjct: 309 GPLAPPPPPP---LPPGPAQASVALPPPPGPPPPPPLPSTGPP--PPPPPP--------P 355
Query: 84 LPHATFHHAMPPTPPPSRSTPAHGPFGCS-SGDNDPL 119
LP+ PP PPP+ PA G F S S DN PL
Sbjct: 356 LPNQV---PPPPPPPPAPPLPASGFFLASMSEDNRPL 389
>gi|39930375 enabled homolog isoform b [Homo sapiens]
Length = 570
Score = 32.0 bits (71), Expect = 0.12
Identities = 33/97 (34%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 24 GPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGS 83
GPL PPP G A + P P P +P+ G P P P
Sbjct: 309 GPLAPPPPPP---LPPGPAQASVALPPPPGPPPPPPLPSTGPP--PPPPPP--------P 355
Query: 84 LPHATFHHAMPPTPPPSRSTPAHGPFGCS-SGDNDPL 119
LP+ PP PPP+ PA G F S S DN PL
Sbjct: 356 LPNQV---PPPPPPPPAPPLPASGFFLASMSEDNRPL 389
>gi|169165478 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 32.0 bits (71), Expect = 0.12
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 28/73 (38%)
Query: 43 AAGGGVVPGPAVPARWRVPTQGQ---------------RLLPDTPSPGLWRCTFGSLPHA 87
++GGG PGP P R R T G +L PD P PG RC
Sbjct: 63 SSGGGTWPGPEAPGR-RARTLGAEPAPGPGLSGRRCPLKLRPDAPVPGRTRC-------- 113
Query: 88 TFHHAMPPTPPPS 100
PPTP P+
Sbjct: 114 ----RGPPTPVPA 122
>gi|169165887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 32.0 bits (71), Expect = 0.12
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 28/73 (38%)
Query: 43 AAGGGVVPGPAVPARWRVPTQGQ---------------RLLPDTPSPGLWRCTFGSLPHA 87
++GGG PGP P R R T G +L PD P PG RC
Sbjct: 63 SSGGGTWPGPEAPGR-RARTLGAEPAPGPGLSGRRCPLKLRPDAPVPGRTRC-------- 113
Query: 88 TFHHAMPPTPPPS 100
PPTP P+
Sbjct: 114 ----RGPPTPVPA 122
>gi|169165071 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 32.0 bits (71), Expect = 0.12
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 28/73 (38%)
Query: 43 AAGGGVVPGPAVPARWRVPTQGQ---------------RLLPDTPSPGLWRCTFGSLPHA 87
++GGG PGP P R R T G +L PD P PG RC
Sbjct: 63 SSGGGTWPGPEAPGR-RARTLGAEPAPGPGLSGRRCPLKLRPDAPVPGRTRC-------- 113
Query: 88 TFHHAMPPTPPPS 100
PPTP P+
Sbjct: 114 ----RGPPTPVPA 122
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 31.6 bits (70), Expect = 0.16
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 17/61 (27%)
Query: 45 GGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTP 104
GG V GP P G R PD+ SPG PPTPPP+R+ P
Sbjct: 522 GGRVGKGPGAPPS---ALPGPRPRPDSLSPG--------------EPPGPPTPPPARALP 564
Query: 105 A 105
A
Sbjct: 565 A 565
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 31.6 bits (70), Expect = 0.16
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 17/61 (27%)
Query: 45 GGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPPPSRSTP 104
GG V GP P G R PD+ SPG PPTPPP+R+ P
Sbjct: 522 GGRVGKGPGAPPS---ALPGPRPRPDSLSPG--------------EPPGPPTPPPARALP 564
Query: 105 A 105
A
Sbjct: 565 A 565
>gi|44771211 mediator complex subunit 13-like [Homo sapiens]
Length = 2210
Score = 31.6 bits (70), Expect = 0.16
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 44 AGGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRCTFGSLPHATFHHAMPPTPP 98
+G GV+P PA P R+ VPT P TP G GS+ + + P + P
Sbjct: 1033 SGAGVLPSPATP-RFSVPTPRTPRTPRTPRGGGTASGQGSVKYDSTDQGSPASTP 1086
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 31.2 bits (69), Expect = 0.21
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 20 TAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRC 79
+ G P +PP + + +H+ V P P + P QG LP P
Sbjct: 101 SGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYP----- 155
Query: 80 TFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDP 118
SLP + P PPP + A G + D DP
Sbjct: 156 --ASLP------SCAPPPPPQKRYTAAGAGAGGTPDYDP 186
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 31.2 bits (69), Expect = 0.21
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 20 TAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRC 79
+ G P +PP + + +H+ V P P + P QG LP P
Sbjct: 259 SGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYP----- 313
Query: 80 TFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDP 118
SLP + P PPP + A G + D DP
Sbjct: 314 --ASLP------SCAPPPPPQKRYTAAGAGAGGTPDYDP 344
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 31.2 bits (69), Expect = 0.21
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 20 TAGTGPLGFHIPPPSWWATDGVHAAGGGVVPGPAVPARWRVPTQGQRLLPDTPSPGLWRC 79
+ G P +PP + + +H+ V P P + P QG LP P
Sbjct: 259 SGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYP----- 313
Query: 80 TFGSLPHATFHHAMPPTPPPSRSTPAHGPFGCSSGDNDP 118
SLP + P PPP + A G + D DP
Sbjct: 314 --ASLP------SCAPPPPPQKRYTAAGAGAGGTPDYDP 344
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 31.2 bits (69), Expect = 0.21
Identities = 34/117 (29%), Positives = 39/117 (33%), Gaps = 36/117 (30%)
Query: 25 PLGFHIPPPSWWATDGVHAAGGGVVPGP-------------AVPARWRVPTQGQRLLPDT 71
P + P PSW V +G +P P AVP VP P
Sbjct: 913 PFTHYAPLPSWPCYPHVSPSGYPCLPPPPTVPLVSGTPGAYAVPPTCSVPWAPP---PAP 969
Query: 72 PSPGLWRCTFGSL------PHATFHHAMPPTPPP--------------SRSTPAHGP 108
SP CT+G L HA F +PP P P SR TPA P
Sbjct: 970 VSPYSSTCTYGPLGWGPGPQHAPFWSTVPPPPLPPASIGRAVPQPKMESRGTPAGPP 1026
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.140 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,526,834
Number of Sequences: 37866
Number of extensions: 569588
Number of successful extensions: 2475
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 2225
Number of HSP's gapped (non-prelim): 515
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.