Search of human proteins with 239741872

Search of human proteins with 239741872

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
sapiens]
         (219 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ...   455   e-128
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ...   455   e-128
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]           452   e-127
gi|240849329 hypothetical protein LOC728392 [Homo sapiens]             41   0.001
gi|9966841 cell death regulator aven [Homo sapiens]                    40   0.002
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         39   0.003
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ...    38   0.006
gi|58761548 tau tubulin kinase 1 [Homo sapiens]                        38   0.008
gi|76781485 vascular endothelial growth factor A isoform f precu...    37   0.010
gi|76781484 vascular endothelial growth factor A isoform e precu...    37   0.010
gi|76781483 vascular endothelial growth factor A isoform d precu...    37   0.010
gi|76781482 vascular endothelial growth factor A isoform c precu...    37   0.010
gi|76781481 vascular endothelial growth factor A isoform b precu...    37   0.010
gi|76781480 vascular endothelial growth factor A isoform a precu...    37   0.010
gi|76781487 vascular endothelial growth factor A isoform g precu...    37   0.010
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s...    37   0.010
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s...    37   0.010
gi|156416026 zinc finger protein 219 [Homo sapiens]                    37   0.010
gi|156415998 zinc finger protein 219 [Homo sapiens]                    37   0.010
gi|156415996 zinc finger protein 219 [Homo sapiens]                    37   0.010
gi|7661690 coiled-coil domain containing 9 [Homo sapiens]              37   0.013
gi|16579828 zinc finger protein 91 [Homo sapiens]                      37   0.017
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               36   0.029
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...    35   0.038
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...    35   0.038
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...    35   0.038
gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo ...    35   0.038
gi|239753948 PREDICTED: hypothetical protein [Homo sapiens]            35   0.050
gi|239748488 PREDICTED: hypothetical protein [Homo sapiens]            35   0.050

>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
           sapiens]
          Length = 219

 Score =  455 bits (1171), Expect = e-128
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60
           MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH
Sbjct: 1   MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60

Query: 61  GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESE 120
           GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESE
Sbjct: 61  GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESE 120

Query: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
           GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP
Sbjct: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180

Query: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219
           PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL
Sbjct: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219


>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
           sapiens]
          Length = 219

 Score =  455 bits (1171), Expect = e-128
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60
           MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH
Sbjct: 1   MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60

Query: 61  GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESE 120
           GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESE
Sbjct: 61  GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESE 120

Query: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
           GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP
Sbjct: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180

Query: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219
           PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL
Sbjct: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219


>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score =  452 bits (1162), Expect = e-127
 Identities = 218/219 (99%), Positives = 218/219 (99%)

Query: 1   MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60
           MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH
Sbjct: 1   MRCCDSKVLDMEKVGQHLPFSSRHCFLLEGPNLLSILPISLNCQDSQGFCRRLPLCGTHH 60

Query: 61  GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESE 120
           GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSH QQQHTVLSQSLSPMESE
Sbjct: 61  GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHRQQQHTVLSQSLSPMESE 120

Query: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
           GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP
Sbjct: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180

Query: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219
           PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL
Sbjct: 181 PLLAFCLGREFSSGFFSPLLIPRAQFGAHASTRRPATAL 219


>gi|240849329 hypothetical protein LOC728392 [Homo sapiens]
          Length = 119

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 119 SEGPHRRRKPGAESPRRAIEAGA---RPPRQRPGAGTAAARASRAGPRASRRGRGRGRGL 175
           ++G  RRR  G E  R   E+     +PP + P A      AS AG +A RR  GR +G 
Sbjct: 2   ADGLFRRRPWGLEQIRPDPESEGLFDKPPPEDPPAARGPRSASAAGKKAGRRAGGRAQGG 61

Query: 176 QAARPPLLA 184
           +A +PP  A
Sbjct: 62  RAGQPPKAA 70


>gi|9966841 cell death regulator aven [Homo sapiens]
          Length = 362

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 124 RRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAG---PRASRRGRGRGRGLQAAR 179
           R R+PG   P      G     +RPGA  A AR    G       RRGRGRGRG + AR
Sbjct: 11  RGRRPGRGRP------GGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGAR 63


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 38/113 (33%), Positives = 47/113 (41%), Gaps = 24/113 (21%)

Query: 89  GSFSGRARSSKHSHPQQQHTVLSQSLSPMESEGPHRRRKPG-----AESPRRAIEAGARP 143
           GSF GR +S     P  Q T  + +  P  +  P R R+PG     +  PR    A   P
Sbjct: 188 GSFGGRPKSQP---PLPQETA-APAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPP 243

Query: 144 PRQRPGAGTAAARASRAG--------------PRASRRGRGRGRG-LQAARPP 181
           P   PGA + A+R+  AG              PRA   G GR  G L  A PP
Sbjct: 244 PAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPP 296



 Score = 28.5 bits (62), Expect = 4.7
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 133 PRRAIEAGARPPRQRPGAGTAAARASRAGPRA-SRRGRGRGRGLQAARPPLL 183
           PR+    G RP  Q P     AA A + GP A   R R  GR   A+R P L
Sbjct: 184 PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRL 235


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 94  RARSSKHSHPQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQR 147
           R+RS  H+ P+++H   S+S SP     P RR  P   +P R +     PPR R
Sbjct: 289 RSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPP---PPRHR 339


>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
           sapiens]
          Length = 306

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 13/99 (13%)

Query: 86  CSRGSFSGRARSSKHSHPQQQHTVLSQSLSPMESEGPHR--RRKPGAESPR-RAIEAGAR 142
           C     +G+ R S+ S  +Q          P    G  R  R  P A+  R +  E  A 
Sbjct: 200 CQPAGGTGQRRGSRSSPSRQ----------PAGGTGQRRGSRSSPSADQQRAQDREEEAA 249

Query: 143 PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARPP 181
            P++RP  GT   R + A P  +  G G+ RG  AA  P
Sbjct: 250 QPQRRPAGGTGQRRGTAAAPVPTTGGTGQRRGTAAAPAP 288



 Score = 30.8 bits (68), Expect = 0.94
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 111 SQSLSPMESEGPHRRRKPGAESP------RRAIEAGARPPRQRPGAGTAAARASRAGPRA 164
           S+S S  + +G   R +  A +P       R  +   + P+ RP AGT   R S   P A
Sbjct: 106 SRSSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAAGTGQRRGSGCSPSA 165

Query: 165 SRRGRGRGRGLQAARPPL 182
            ++ R + R  +A   P+
Sbjct: 166 DQQ-RAQDREEEATAAPV 182



 Score = 29.3 bits (64), Expect = 2.7
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 111 SQSLSPMESEGPHRRRKPGAESP------RRAIEAGARPPRQRPGAGTAAARASRAGPRA 164
           S S    + +G   R +  A +P       R  +   + P++RP  GT   R SR+   A
Sbjct: 53  SGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRRGSRSSSSA 112

Query: 165 SRRGRGRGRGLQAARPP 181
            ++G  + R  +AA  P
Sbjct: 113 DQQG-AQDREEEAAAAP 128



 Score = 29.3 bits (64), Expect = 2.7
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 92  SGRARSSKHSHPQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAG 151
           +G+ R S+ S    Q     Q     E E    +R+P   + +R   A A  P      G
Sbjct: 224 TGQRRGSRSSPSADQ-----QRAQDREEEAAQPQRRPAGGTGQRRGTAAAPVPTT---GG 275

Query: 152 TAAARASRAGPRASRRGRGRGRG 174
           T   R + A P  +  G G+ RG
Sbjct: 276 TGQRRGTAAAPAPTSTGTGQRRG 298


>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
          Length = 1321

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 111  SQSLSPMESEGPHRRRKPGAESPRRAIEAGARPP-RQRPGAGTAAARASRAGPRASRRGR 169
            SQSLS  ES  P  + +PG   PR    A A+P     PG      R      RA+ +GR
Sbjct: 1251 SQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDGTPSPGGSKKGPRGKLQAQRATTKGR 1310

Query: 170  GRG 172
              G
Sbjct: 1311 AGG 1313



 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 133  PRRAIEAGARPPRQRP---GAGTAAARASRAGPRASRRGR 169
            P RA +AGARPP  R     A T+AAR + A PR+    R
Sbjct: 1218 PGRA-QAGARPPAPRSPRLPASTSAARNASASPRSQSLSR 1256


>gi|76781485 vascular endothelial growth factor A isoform f
           precursor [Homo sapiens]
          Length = 327

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 92  SGRARSSKHSHPQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
           SG ARS+     + Q     +     E  GP  R   RKPG+ +   A+ A + P  + P
Sbjct: 77  SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136

Query: 149 GAGTAAARASRAGPRASRRG 168
               A ARAS  G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153


>gi|76781484 vascular endothelial growth factor A isoform e
           precursor [Homo sapiens]
          Length = 354

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 92  SGRARSSKHSHPQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
           SG ARS+     + Q     +     E  GP  R   RKPG+ +   A+ A + P  + P
Sbjct: 77  SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136

Query: 149 GAGTAAARASRAGPRASRRG 168
               A ARAS  G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153


>gi|76781483 vascular endothelial growth factor A isoform d
           precursor [Homo sapiens]
          Length = 371

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 92  SGRARSSKHSHPQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
           SG ARS+     + Q     +     E  GP  R   RKPG+ +   A+ A + P  + P
Sbjct: 77  SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136

Query: 149 GAGTAAARASRAGPRASRRG 168
               A ARAS  G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153


>gi|76781482 vascular endothelial growth factor A isoform c
           precursor [Homo sapiens]
          Length = 389

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 92  SGRARSSKHSHPQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
           SG ARS+     + Q     +     E  GP  R   RKPG+ +   A+ A + P  + P
Sbjct: 77  SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136

Query: 149 GAGTAAARASRAGPRASRRG 168
               A ARAS  G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153


>gi|76781481 vascular endothelial growth factor A isoform b
           precursor [Homo sapiens]
          Length = 395

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 92  SGRARSSKHSHPQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
           SG ARS+     + Q     +     E  GP  R   RKPG+ +   A+ A + P  + P
Sbjct: 77  SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136

Query: 149 GAGTAAARASRAGPRASRRG 168
               A ARAS  G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153


>gi|76781480 vascular endothelial growth factor A isoform a
           precursor [Homo sapiens]
          Length = 412

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 92  SGRARSSKHSHPQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
           SG ARS+     + Q     +     E  GP  R   RKPG+ +   A+ A + P  + P
Sbjct: 77  SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136

Query: 149 GAGTAAARASRAGPRASRRG 168
               A ARAS  G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153


>gi|76781487 vascular endothelial growth factor A isoform g
           precursor [Homo sapiens]
          Length = 371

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 92  SGRARSSKHSHPQQQHTVLSQSLSPMESEGPHRR---RKPGAESPRRAIEAGARPPRQRP 148
           SG ARS+     + Q     +     E  GP  R   RKPG+ +   A+ A + P  + P
Sbjct: 77  SGAARSASSGREEPQPEEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAP 136

Query: 149 GAGTAAARASRAGPRASRRG 168
               A ARAS  G R +RRG
Sbjct: 137 ---QALARASGRGGRVARRG 153


>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
           sapiens]
          Length = 2506

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 41/146 (28%)

Query: 46  SQGFCRRLPLCGTHH------GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSK 99
           S G   R P  G+        G Y   S HH     L+           G + G A   K
Sbjct: 874 SAGLDARRPWAGSQEAELSREGPYGRESDHHAREGSLEQP---------GFWEGEAERGK 924

Query: 100 HSHPQQQHTVL------SQSLSPME-SEGPHRR----RKPGAESPRRAIEAGARPPRQRP 148
              P ++H         S+S SP   ++G HRR    R+PG E P    E  AR      
Sbjct: 925 AGDPHRRHVHRQGGSRESRSGSPRTGADGEHRRHRAHRRPGEEGPEDKAERRAR------ 978

Query: 149 GAGTAAARASRAGPRASRRGRGRGRG 174
                     R G R +R G G G G
Sbjct: 979 ---------HREGSRPARGGEGEGEG 995



 Score = 30.0 bits (66), Expect = 1.6
 Identities = 37/153 (24%), Positives = 53/153 (34%), Gaps = 11/153 (7%)

Query: 69   HHPSPELLQMRNMDCYHCSRGSFS-GRARSSKHSH-PQQQHTVLSQSLSPMESEGPHRRR 126
            HHP P      + D Y   R      RAR  + S  P +    ++         G     
Sbjct: 2218 HHPPPP-----DKDRYAQERPDHGRARARDQRWSRSPSEGREHMAHRQGSSSVSGSPAPS 2272

Query: 127  KPGAESPRRA---IEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQA-ARPPL 182
              G  +PRR    +      PR          +A  +GP   ++ + + +  QA ARP  
Sbjct: 2273 TSGTSTPRRGRRQLPQTPSTPRPHVSYSPVIRKAGGSGPPQQQQQQQQQQQQQAVARPGR 2332

Query: 183  LAFCLGREFSSGFFSPLLIPRAQFGAHASTRRP 215
             A    R +      PL   R   G H+S R P
Sbjct: 2333 AATSGPRRYPGPTAEPLAGDRPPTGGHSSGRSP 2365


>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
           sapiens]
          Length = 2261

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 41/146 (28%)

Query: 46  SQGFCRRLPLCGTHH------GAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSK 99
           S G   R P  G+        G Y   S HH     L+           G + G A   K
Sbjct: 875 SAGLDARRPWAGSQEAELSREGPYGRESDHHAREGSLEQP---------GFWEGEAERGK 925

Query: 100 HSHPQQQHTVL------SQSLSPME-SEGPHRR----RKPGAESPRRAIEAGARPPRQRP 148
              P ++H         S+S SP   ++G HRR    R+PG E P    E  AR      
Sbjct: 926 AGDPHRRHVHRQGGSRESRSGSPRTGADGEHRRHRAHRRPGEEGPEDKAERRAR------ 979

Query: 149 GAGTAAARASRAGPRASRRGRGRGRG 174
                     R G R +R G G G G
Sbjct: 980 ---------HREGSRPARGGEGEGEG 996


>gi|156416026 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 46/189 (24%), Positives = 61/189 (32%), Gaps = 32/189 (16%)

Query: 54  PLCGTHHGAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQS 113
           P CG      S  S+HH    L        Y C    ++G    S   H Q+ H      
Sbjct: 501 PFCGK-----SFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSG 555

Query: 114 LSP----------MESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPR 163
             P               P    KP  + P   +E  + P     GAG  + R   +  R
Sbjct: 556 AGPGPPPEPPPPSQRGSAPQSGAKPSPQ-PATWVEGASSPRPPSSGAGPGSRRKPASPGR 614

Query: 164 ASRRGRG-----------RGRGLQAARPPLLAFCLGREFSSGFFSPLLIP---RAQFGAH 209
             R GRG            G G +A     L  CL   F++G  +P L+    +      
Sbjct: 615 TLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATG--APELMALHLQVHHSRR 672

Query: 210 ASTRRPATA 218
           A  RRP  A
Sbjct: 673 ARGRRPPQA 681


>gi|156415998 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 46/189 (24%), Positives = 61/189 (32%), Gaps = 32/189 (16%)

Query: 54  PLCGTHHGAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQS 113
           P CG      S  S+HH    L        Y C    ++G    S   H Q+ H      
Sbjct: 501 PFCGK-----SFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSG 555

Query: 114 LSP----------MESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPR 163
             P               P    KP  + P   +E  + P     GAG  + R   +  R
Sbjct: 556 AGPGPPPEPPPPSQRGSAPQSGAKPSPQ-PATWVEGASSPRPPSSGAGPGSRRKPASPGR 614

Query: 164 ASRRGRG-----------RGRGLQAARPPLLAFCLGREFSSGFFSPLLIP---RAQFGAH 209
             R GRG            G G +A     L  CL   F++G  +P L+    +      
Sbjct: 615 TLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATG--APELMALHLQVHHSRR 672

Query: 210 ASTRRPATA 218
           A  RRP  A
Sbjct: 673 ARGRRPPQA 681


>gi|156415996 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 46/189 (24%), Positives = 61/189 (32%), Gaps = 32/189 (16%)

Query: 54  PLCGTHHGAYSINSSHHPSPELLQMRNMDCYHCSRGSFSGRARSSKHSHPQQQHTVLSQS 113
           P CG      S  S+HH    L        Y C    ++G    S   H Q+ H      
Sbjct: 501 PFCGK-----SFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSG 555

Query: 114 LSP----------MESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPR 163
             P               P    KP  + P   +E  + P     GAG  + R   +  R
Sbjct: 556 AGPGPPPEPPPPSQRGSAPQSGAKPSPQ-PATWVEGASSPRPPSSGAGPGSRRKPASPGR 614

Query: 164 ASRRGRG-----------RGRGLQAARPPLLAFCLGREFSSGFFSPLLIP---RAQFGAH 209
             R GRG            G G +A     L  CL   F++G  +P L+    +      
Sbjct: 615 TLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATG--APELMALHLQVHHSRR 672

Query: 210 ASTRRPATA 218
           A  RRP  A
Sbjct: 673 ARGRRPPQA 681


>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
          Length = 531

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 14/84 (16%)

Query: 103 PQQQHTVLSQSLSPMESE---GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARAS- 158
           P++  +V  ++++ +ESE   GP RR  PG   P  A + G  PP+Q   AG   A  S 
Sbjct: 55  PRKGRSVEKENVA-VESEKNLGPSRR-SPGTPRPPGASKGGRTPPQQGGRAGMGRASRSW 112

Query: 159 --------RAGPRASRRGRGRGRG 174
                   R G    R  RGRGRG
Sbjct: 113 EGSPGEQPRGGGAGGRGRRGRGRG 136


>gi|16579828 zinc finger protein 91 [Homo sapiens]
          Length = 570

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 118 ESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQA 177
           E   P ++ + G E    A +A    P+QRP    AAA A     R  R GR RGR   A
Sbjct: 7   EPRPPEQQDQEGGE----AAKAAPEEPQQRPPEAVAAAPAGTTSSRVLRGGRDRGRAAAA 62

Query: 178 A 178
           A
Sbjct: 63  A 63


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 115  SPMESEGPHRRRKPGAE---SPRRAIEAGARPPRQRP---GAGTAAARASRA--GPRASR 166
            +P     PH    P +    S  + ++  + PPR+RP   G GT+  R   A  GP   R
Sbjct: 1198 TPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDR 1257

Query: 167  RGRGRGRGLQAARPP 181
             G+GRG    A R P
Sbjct: 1258 GGKGRGGPGPAQRVP 1272


>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score = 35.4 bits (80), Expect = 0.038
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 121 GPHRRRKPGAESPRRAIEAGARPPR------QRPGAGTAAARASRAGPRASRRGRGRGRG 174
           G   R   GA     +   GA PPR      QR G G+A       G    +RGRG+G+G
Sbjct: 494 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKG 553

Query: 175 LQAARPPLL 183
           ++A  P LL
Sbjct: 554 VEAG-PDLL 561


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score = 35.4 bits (80), Expect = 0.038
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 121 GPHRRRKPGAESPRRAIEAGARPPR------QRPGAGTAAARASRAGPRASRRGRGRGRG 174
           G   R   GA     +   GA PPR      QR G G+A       G    +RGRG+G+G
Sbjct: 459 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKG 518

Query: 175 LQAARPPLL 183
           ++A  P LL
Sbjct: 519 VEAG-PDLL 526


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score = 35.4 bits (80), Expect = 0.038
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 121 GPHRRRKPGAESPRRAIEAGARPPR------QRPGAGTAAARASRAGPRASRRGRGRGRG 174
           G   R   GA     +   GA PPR      QR G G+A       G    +RGRG+G+G
Sbjct: 396 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKG 455

Query: 175 LQAARPPLL 183
           ++A  P LL
Sbjct: 456 VEAG-PDLL 463


>gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo
           sapiens]
          Length = 790

 Score = 35.4 bits (80), Expect = 0.038
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 38  PISLNCQDSQGFCRRLPLCGTHHGAYSINSSHHPSPELLQMRNMD--------CYHCSRG 89
           P +LN Q + GFC R       H +++ + + H  P   Q    D        C  C + 
Sbjct: 484 PFTLNVQHN-GFCERCHNARQLHASHAPDHTRHLDPGKCQACLQDVTRTFNGICSTCFKR 542

Query: 90  SFSGRARSSKHSHPQQQHTVLSQSLSPM-ESEGPHRRRKPGAESPRRAIEAGARPPRQRP 148
           + +  + S   S P   H       S +  S  PH   + G ++P   +   AR P  R 
Sbjct: 543 TTAEASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTPGDRT 602

Query: 149 G 149
           G
Sbjct: 603 G 603


>gi|239753948 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 35.0 bits (79), Expect = 0.050
 Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 101 SHPQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRA 160
           SH    HT  +Q+  P     P  R   GA  P     A A PP  R    +A A ASR 
Sbjct: 51  SHESGLHTH-TQAPVPAADRLPAIRAVCGARVP--GARAAAAPPPFRSSDASARAPASRN 107

Query: 161 GPRASRRGRGRGRGLQAARPPLLA 184
            P A    RG+G     ARP + A
Sbjct: 108 TPTARTGRRGKGETQPRARPSVAA 131


>gi|239748488 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 35.0 bits (79), Expect = 0.050
 Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 101 SHPQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRA 160
           SH    HT  +Q+  P     P  R   GA  P     A A PP  R    +A A ASR 
Sbjct: 51  SHESGLHTH-TQAPVPAADRLPAIRAVCGARVP--GARAAAAPPPFRSSDASARAPASRN 107

Query: 161 GPRASRRGRGRGRGLQAARPPLLA 184
            P A    RG+G     ARP + A
Sbjct: 108 TPTARTGRRGKGETQPRARPSVAA 131


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,089,286
Number of Sequences: 37866
Number of extensions: 536427
Number of successful extensions: 4825
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 376
Number of HSP's that attempted gapping in prelim test: 4186
Number of HSP's gapped (non-prelim): 925
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.