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Search of human proteins with 116295251
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116295251 fascin 2 isoform 2 [Homo sapiens]
(516 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116295251 fascin 2 isoform 2 [Homo sapiens] 1071 0.0
gi|6912626 fascin 2 isoform 1 [Homo sapiens] 1005 0.0
gi|4507115 fascin 1 [Homo sapiens] 554 e-158
gi|9966791 fascin 3 [Homo sapiens] 162 7e-40
gi|4503693 fibroblast growth factor 17 precursor [Homo sapiens] 35 0.21
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 32 1.1
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 32 1.1
gi|4826726 fibroblast growth factor 19 precursor [Homo sapiens] 32 1.4
gi|194097386 gamma-aminobutyric acid (GABA) receptor, rho 1 [Hom... 32 1.4
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 31 3.1
gi|153266866 gamma-aminobutyric acid (GABA) receptor, rho 2 prec... 30 4.1
gi|4557445 regulator of chromosome condensation and BTB domain c... 30 5.3
gi|115529449 upstream binding transcription factor, RNA polymera... 29 9.0
gi|115529451 upstream binding transcription factor, RNA polymera... 29 9.0
gi|7657671 upstream binding transcription factor, RNA polymerase... 29 9.0
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 29 9.0
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 29 9.0
>gi|116295251 fascin 2 isoform 2 [Homo sapiens]
Length = 516
Score = 1071 bits (2769), Expect = 0.0
Identities = 516/516 (100%), Positives = 516/516 (100%)
Query: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL 60
MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL
Sbjct: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL 60
Query: 61 RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC 120
RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC
Sbjct: 61 RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC 120
Query: 121 FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR 180
FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR
Sbjct: 121 FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR 180
Query: 181 SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA 240
SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA
Sbjct: 181 SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA 240
Query: 241 GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET 300
GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET
Sbjct: 241 GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET 300
Query: 301 KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ 360
KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ
Sbjct: 301 KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ 360
Query: 361 LAAISDFVGPPPRPAWTGKVAGGAAQQTLSPPGKDEEFTLKLINRPILVLRGLDGFVCHH 420
LAAISDFVGPPPRPAWTGKVAGGAAQQTLSPPGKDEEFTLKLINRPILVLRGLDGFVCHH
Sbjct: 361 LAAISDFVGPPPRPAWTGKVAGGAAQQTLSPPGKDEEFTLKLINRPILVLRGLDGFVCHH 420
Query: 421 RGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRER 480
RGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRER
Sbjct: 421 RGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRER 480
Query: 481 GRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY 516
GRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY
Sbjct: 481 GRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY 516
>gi|6912626 fascin 2 isoform 1 [Homo sapiens]
Length = 492
Score = 1005 bits (2599), Expect = 0.0
Identities = 492/516 (95%), Positives = 492/516 (95%), Gaps = 24/516 (4%)
Query: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL 60
MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL
Sbjct: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL 60
Query: 61 RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC 120
RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC
Sbjct: 61 RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC 120
Query: 121 FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR 180
FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR
Sbjct: 121 FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR 180
Query: 181 SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA 240
SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA
Sbjct: 181 SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA 240
Query: 241 GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET 300
GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET
Sbjct: 241 GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET 300
Query: 301 KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ 360
KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ
Sbjct: 301 KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ 360
Query: 361 LAAISDFVGPPPRPAWTGKVAGGAAQQTLSPPGKDEEFTLKLINRPILVLRGLDGFVCHH 420
LAAISDFV GKDEEFTLKLINRPILVLRGLDGFVCHH
Sbjct: 361 LAAISDFV------------------------GKDEEFTLKLINRPILVLRGLDGFVCHH 396
Query: 421 RGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRER 480
RGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRER
Sbjct: 397 RGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRER 456
Query: 481 GRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY 516
GRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY
Sbjct: 457 GRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY 492
>gi|4507115 fascin 1 [Homo sapiens]
Length = 493
Score = 554 bits (1427), Expect = e-158
Identities = 275/518 (53%), Positives = 362/518 (69%), Gaps = 27/518 (5%)
Query: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQ-GTAVL 59
M NG + ++IQFGL+N ++YLTAE+FGFKVNASA SLK+KQ W LE P + G+A +
Sbjct: 1 MTANGTAEAVQIQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAV 60
Query: 60 LRSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLS 119
SHLGRYL+A++DG V CE E PG DCRFL++ DGRW L+SE H R+FGGTED+LS
Sbjct: 61 CLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLS 120
Query: 120 CFATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPRE-DEMAADGDKPWGVDALLTLI 178
CFA VSPAE W+VH+A+HPQ ++ SV+R+RY HL R DE+A D D PWGVD+L+TL
Sbjct: 121 CFAQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLA 180
Query: 179 FRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTL 238
F+ +RY +++ D R+LR DGRLV PEP YTLEF++GK+AF+DC+G YLAP GP+GTL
Sbjct: 181 FQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTL 240
Query: 239 KAGRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQ 298
KAG+ T+ GKDELF LE+S QVVL AAN R VS RQG+++SANQD+E D ETF ++ID+
Sbjct: 241 KAGKATKVGKDELFALEQSCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDR 300
Query: 299 ETKKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKN 358
+TKKC F + TG YWTL GG+ +TA+ +A+ F++EWR RR+ L+ASNG++V KKN
Sbjct: 301 DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKN 360
Query: 359 GQLAAISDFVGPPPRPAWTGKVAGGAAQQTLSPPGKDEEFTLKLINRPILVLRGLDGFVC 418
GQLAA ++ G E F +KLINRPI+V RG GF+
Sbjct: 361 GQLAA------------------------SVETAGDSELFLMKLINRPIIVFRGEHGFIG 396
Query: 419 HHRGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFR 478
+ + LD NRS YDVF L F+DGAY I+ G +W GS +V S G+ DF FEF
Sbjct: 397 CRKVTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFC 456
Query: 479 ERGRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY 516
+ ++AI+ G+YL+G +G+L+A A+ +LWEY
Sbjct: 457 DYNKVAIKV-GGRYLKGDHAGVLKASAETVDPASLWEY 493
>gi|9966791 fascin 3 [Homo sapiens]
Length = 498
Score = 162 bits (410), Expect = 7e-40
Identities = 137/508 (26%), Positives = 211/508 (41%), Gaps = 28/508 (5%)
Query: 12 IQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTW-VLEPDPGQGTAVLLRSSHLGRYLS 70
++ GL++ YLT E+ V A+A SL R+QTW +L + + AV+ S G YL
Sbjct: 16 LRVGLISWAGTYLTFEACKNTVTATAKSLGRRQTWEILVSNEHETQAVVRLKSVQGLYLL 75
Query: 71 AEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSCFATAVSPAEL 130
E DG V + FL+ + +W L+ GR+ + C + +S +
Sbjct: 76 CECDGTVCYGRPRTSHHGCFLLRFHRNSKWTLQCLISGRYLESNGKDVFCTSHVLSAYHM 135
Query: 131 WTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFRSRRYCLKSCD 190
WT A+H L S R Y P + D P + L FR Y L++
Sbjct: 136 WTPRPALHVHVILYSPIHRCYARADPTMGRIWVDAAVPCLEECGFLLHFRDGCYHLETST 195
Query: 191 SRYLRSDGRLVWEPEPRACYTLEFKAGKL-AFKDCDGHYLAPVGPAGTLKAGRNTRPGKD 249
+L RL +P + + ++ + G L A D +G L P G L G N G +
Sbjct: 196 HHFLSHVDRLFSQPSSQTAFHMQVRPGGLVALCDGEGGMLYPQGTHLLLGMGCNPMRG-E 254
Query: 250 ELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQETKKCTFYSST 309
E F L+ V L + R++SV V A + F + D E+ S+
Sbjct: 255 EWFILQHCPTWVSLRSKTGRFISVIYDGEVRAASERLNRMSLFQFECDSESPTVQLRSAN 314
Query: 310 GGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQLAAISDFVG 369
G Y + H + A + ++T F M W R+ L++ GR++ + N L A
Sbjct: 315 GYYLSQRRHRAVMADGHPLESDTFFRMHWNCGRIILQSCRGRFLGIAPNSLLMA------ 368
Query: 370 PPPRPAWTGKVAGGAAQQTLSPPGKDEEFTLKLINRPILVLRGLDGFVCHHRGSNQLDTN 429
+ PG +EEF + NR LVLRG G+V G + + N
Sbjct: 369 ------------------NVILPGPNEEFGILFANRSFLVLRGRYGYVGSSSGHDLIQCN 410
Query: 430 RSVYDVFH-LSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRAR 488
+ D H L G Y + + G FW S G+ G+ A +F E + L + A
Sbjct: 411 QDQPDRIHLLPCRPGIYHFQAQGGSFWSITSFGTFRPWGKFALNFCIELQGSNLLTVLAP 470
Query: 489 SGKYLRGGASGLLRADADAPAGTALWEY 516
+G Y+R SG L AD++ +WE+
Sbjct: 471 NGFYMRADQSGTLLADSEDITRECIWEF 498
>gi|4503693 fibroblast growth factor 17 precursor [Homo sapiens]
Length = 216
Score = 34.7 bits (78), Expect = 0.21
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 267 NHRYVSVRQGVNVSANQDDELDHETFLMQIDQETKKCTFYSSTGGYWTLVTHGGIHATAT 326
NH + Q V D+L ++ ++ YS T G VT I ATA
Sbjct: 27 NHPSPNFNQYVRDQGAMTDQLSR--------RQIREYQLYSRTSGKHVQVTGRRISATAE 78
Query: 327 QVS--ANTMFEMEWRGRRVALK-ASNGRYVCMKKNGQL 361
+ A + E + G RV +K A + +Y+CM K G+L
Sbjct: 79 DGNKFAKLIVETDTFGSRVRIKGAESEKYICMNKRGKL 116
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 435 VFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLR 494
+F + +DG R GR W+ G G+VC D D E G +R R GK
Sbjct: 769 LFRVRLADGPNRCAGRLE-VWHAGRWGTVCDDNWDLRDATVACWELGCGKVRPRVGKTHY 827
Query: 495 GGASGLLRAD 504
G +G + D
Sbjct: 828 GPGTGPIWLD 837
>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 446 RIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRADA 505
R G G W G G + + GER F GR+ +R + +L GA+GL A A
Sbjct: 66 RASGMRVGIWAAG--GGLAAAGERNSVRAVSFSS-GRVGVREEAAGHLAVGAAGLTGAHA 122
Query: 506 DAPAG 510
D G
Sbjct: 123 DLAVG 127
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 446 RIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRADA 505
R G G W G G + + GER F GR+ +R + +L GA+GL A A
Sbjct: 66 RASGMRVGIWAAG--GGLAAAGERNSVRAVSFSS-GRVGVREEAAGHLAVGAAGLTGAHA 122
Query: 506 DAPAG 510
D G
Sbjct: 123 DLAVG 127
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 168 PWGVDALLTLIFRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGH 227
PW + L TL+ S KSC R+ + G+L C E G KDCD H
Sbjct: 6 PWWLCVLGTLVGLSATPAPKSCPERHYWAQGKL-------CCQMCE--PGTFLVKDCDQH 56
Query: 228 YLA----PVGPAGTLKAGRNTRP 246
A P P + +TRP
Sbjct: 57 RKAAQCDPCIPGVSFSPDHHTRP 79
>gi|4826726 fibroblast growth factor 19 precursor [Homo sapiens]
Length = 216
Score = 32.0 bits (71), Expect = 1.4
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 58 VLLRSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPH 107
V ++ H RYL DG++ + DC F +PDG V RSE H
Sbjct: 90 VAIKGVHSVRYLCMGADGKMQGLLQYSEEDCAFEEEIRPDGYNVYRSEKH 139
>gi|194097386 gamma-aminobutyric acid (GABA) receptor, rho 1 [Homo
sapiens]
Length = 479
Score = 32.0 bits (71), Expect = 1.4
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 278 NVSANQDDELDHETFLMQIDQETKKCTFYSSTGGY------WTLVTHGGIHATATQVSAN 331
N S D+ + FL+Q T K FYSSTG Y +TL H T A
Sbjct: 234 NDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPAT 293
Query: 332 TMFEMEW 338
M + W
Sbjct: 294 LMVMLSW 300
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 30.8 bits (68), Expect = 3.1
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 446 RIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRADA 505
R G G W G G + + GER F GR+ +R + +L GA+GL A A
Sbjct: 264 RASGMRVGIWAAG--GGLAAAGERNSVRAVSFSS-GRVGVREEAAGHLAVGAAGLTGAHA 320
Query: 506 D 506
D
Sbjct: 321 D 321
>gi|153266866 gamma-aminobutyric acid (GABA) receptor, rho 2
precursor [Homo sapiens]
Length = 490
Score = 30.4 bits (67), Expect = 4.1
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 280 SANQDDELDHETFLMQIDQETKKCTFYSSTGGY------WTLVTHGGIHATATQVSANTM 333
S D+++ FL+Q T + FYSSTG Y +TL H T A M
Sbjct: 241 SLKTDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLM 300
Query: 334 FEMEW 338
+ W
Sbjct: 301 VMLSW 305
>gi|4557445 regulator of chromosome condensation and BTB domain
containing protein 2 [Homo sapiens]
Length = 551
Score = 30.0 bits (66), Expect = 5.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 106 PHGRFFGGTEDQLSCFATAVSPAELWTVHLAIHPQAHL 143
PH F T+D +CFAT PA W + L++ P HL
Sbjct: 345 PHLTHFSCTDDVFACFAT---PAVTWRL-LSVEPDDHL 378
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 29.3 bits (64), Expect = 9.0
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 155 CPREDEMAAD-GDKPWGVDALLTLIFRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLE 213
CP + EMAA G W + +LTL+ + + S++ ++ + WE
Sbjct: 7 CPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWE---------- 56
Query: 214 FKAGKLAFKDCDG 226
K+AFKD G
Sbjct: 57 ----KVAFKDFSG 65
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 29.3 bits (64), Expect = 9.0
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 155 CPREDEMAAD-GDKPWGVDALLTLIFRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLE 213
CP + EMAA G W + +LTL+ + + S++ ++ + WE
Sbjct: 7 CPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWE---------- 56
Query: 214 FKAGKLAFKDCDG 226
K+AFKD G
Sbjct: 57 ----KVAFKDFSG 65
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 29.3 bits (64), Expect = 9.0
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 155 CPREDEMAAD-GDKPWGVDALLTLIFRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLE 213
CP + EMAA G W + +LTL+ + + S++ ++ + WE
Sbjct: 7 CPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWE---------- 56
Query: 214 FKAGKLAFKDCDG 226
K+AFKD G
Sbjct: 57 ----KVAFKDFSG 65
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 29.3 bits (64), Expect = 9.0
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 370 PPPRPAWTGKVAGGAAQQTLSPPGKDEEFTLKLINRPI 407
PPPRP TG V G AQQ L L+ + I
Sbjct: 1047 PPPRPESTGTVGPGQAQQRLEQTSSSLAAALRAAEKSI 1084
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 29.3 bits (64), Expect = 9.0
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 370 PPPRPAWTGKVAGGAAQQTLSPPGKDEEFTLKLINRPI 407
PPPRP TG V G AQQ L L+ + I
Sbjct: 1129 PPPRPESTGTVGPGQAQQRLEQTSSSLAAALRAAEKSI 1166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,514,912
Number of Sequences: 37866
Number of extensions: 1111524
Number of successful extensions: 2454
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2408
Number of HSP's gapped (non-prelim): 27
length of query: 516
length of database: 18,247,518
effective HSP length: 107
effective length of query: 409
effective length of database: 14,195,856
effective search space: 5806105104
effective search space used: 5806105104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.