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Search of human proteins with 239741596
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741596 PREDICTED: hypothetical protein XP_002342245 [Homo
sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741596 PREDICTED: hypothetical protein XP_002342245 [Homo ... 276 4e-75
gi|239753160 PREDICTED: hypothetical protein XP_002345578 [Homo ... 271 1e-73
gi|239747730 PREDICTED: hypothetical protein XP_002348256 [Homo ... 271 1e-73
gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo ... 35 0.013
gi|239745360 PREDICTED: hypothetical protein XP_002343446 [Homo ... 35 0.013
gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a ... 35 0.017
gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b ... 35 0.017
gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a ... 35 0.017
gi|239757110 PREDICTED: hypothetical protein [Homo sapiens] 35 0.022
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 35 0.022
gi|169790811 SHC (Src homology 2 domain containing) transforming... 34 0.029
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 34 0.037
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 34 0.037
gi|208431817 protein kinase-like protein SgK493 [Homo sapiens] 34 0.037
gi|14916427 naked cuticle homolog 2 [Homo sapiens] 33 0.049
gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens] 33 0.049
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 33 0.083
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 32 0.11
gi|239750916 PREDICTED: similar to hCG1803335 [Homo sapiens] 32 0.14
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239745314 PREDICTED: similar to hCG1803335 [Homo sapiens] 32 0.14
gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo ... 32 0.19
gi|8923789 FEV (ETS oncogene family) [Homo sapiens] 32 0.19
gi|157743252 pecanex-like 3 [Homo sapiens] 32 0.19
gi|145966685 TLX1 divergent [Homo sapiens] 31 0.24
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 31 0.24
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 31 0.24
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 31 0.24
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 31 0.24
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 31 0.24
>gi|239741596 PREDICTED: hypothetical protein XP_002342245 [Homo
sapiens]
Length = 130
Score = 276 bits (705), Expect = 4e-75
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MVPRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRAAQPTPLGLSRRS 60
MVPRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRAAQPTPLGLSRRS
Sbjct: 1 MVPRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRAAQPTPLGLSRRS 60
Query: 61 LLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRGDGRKNGTASRGCADRSLRRNC 120
LLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRGDGRKNGTASRGCADRSLRRNC
Sbjct: 61 LLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRGDGRKNGTASRGCADRSLRRNC 120
Query: 121 PEGSRPTPAA 130
PEGSRPTPAA
Sbjct: 121 PEGSRPTPAA 130
>gi|239753160 PREDICTED: hypothetical protein XP_002345578 [Homo
sapiens]
Length = 130
Score = 271 bits (692), Expect = 1e-73
Identities = 129/130 (99%), Positives = 129/130 (99%)
Query: 1 MVPRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRAAQPTPLGLSRRS 60
MVPRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRAAQPTPLGLSRRS
Sbjct: 1 MVPRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRAAQPTPLGLSRRS 60
Query: 61 LLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRGDGRKNGTASRGCADRSLRRNC 120
LLGASPRGAPRPQCGWPGHRAAARAPLPTPRPP SRYRGDGRKNGTASRGCADRSLRRNC
Sbjct: 61 LLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPCSRYRGDGRKNGTASRGCADRSLRRNC 120
Query: 121 PEGSRPTPAA 130
PEGSRPTPAA
Sbjct: 121 PEGSRPTPAA 130
>gi|239747730 PREDICTED: hypothetical protein XP_002348256 [Homo
sapiens]
Length = 130
Score = 271 bits (692), Expect = 1e-73
Identities = 129/130 (99%), Positives = 129/130 (99%)
Query: 1 MVPRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRAAQPTPLGLSRRS 60
MVPRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRAAQPTPLGLSRRS
Sbjct: 1 MVPRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRAAQPTPLGLSRRS 60
Query: 61 LLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRGDGRKNGTASRGCADRSLRRNC 120
LLGASPRGAPRPQCGWPGHRAAARAPLPTPRPP SRYRGDGRKNGTASRGCADRSLRRNC
Sbjct: 61 LLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPCSRYRGDGRKNGTASRGCADRSLRRNC 120
Query: 121 PEGSRPTPAA 130
PEGSRPTPAA
Sbjct: 121 PEGSRPTPAA 130
>gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo
sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.013
Identities = 31/96 (32%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 37 HLISAASPDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRA-------AARAPLPT 89
H+ A GR G+ LL P P CG PG A A PL T
Sbjct: 92 HIWQEAEGGGRTVHNQLRGIGGHQLLQTWPEA---PLCGRPGQGAWGAGPTREAPPPLET 148
Query: 90 PRPPWSRYRGDGRKNGTASRGCADRSLRRNCPEGSR 125
P PP R D R G A A R + +C SR
Sbjct: 149 PAPPMPRPNEDPRYGGPALG--AGRPSQSSCQASSR 182
>gi|239745360 PREDICTED: hypothetical protein XP_002343446 [Homo
sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.013
Identities = 31/96 (32%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 37 HLISAASPDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRA-------AARAPLPT 89
H+ A GR G+ LL P P CG PG A A PL T
Sbjct: 92 HIWQEAEGGGRTVHNQLRGIGGHQLLQTWPEA---PLCGRPGQGAWGAGPTREAPPPLET 148
Query: 90 PRPPWSRYRGDGRKNGTASRGCADRSLRRNCPEGSR 125
P PP R D R G A A R + +C SR
Sbjct: 149 PAPPMPRPNEDPRYGGPALG--AGRPSQSSCQASSR 182
>gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 35.0 bits (79), Expect = 0.017
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 44 PDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRAAARA---PLPTPRPP 93
P GR +P P SRR SPR P P G R +RA PLP P PP
Sbjct: 265 PPGRGGRPMPP--SRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPP 315
>gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b
[Homo sapiens]
Length = 463
Score = 35.0 bits (79), Expect = 0.017
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 44 PDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRAAARA---PLPTPRPP 93
P GR +P P SRR SPR P P G R +RA PLP P PP
Sbjct: 265 PPGRGGRPMPP--SRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPP 315
>gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 35.0 bits (79), Expect = 0.017
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 44 PDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRAAARA---PLPTPRPP 93
P GR +P P SRR SPR P P G R +RA PLP P PP
Sbjct: 265 PPGRGGRPMPP--SRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPP 315
>gi|239757110 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 34.7 bits (78), Expect = 0.022
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 58 RRSLLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRGDGRK--NGTASRGCADRS 115
RR + PR P P C G A AP PTP P W R+ G + G AS G A +
Sbjct: 122 RRGCVEKQPRPTPTPACELTG---LAPAP-PTPPPAWWRWARTGTRAMGGAASTGSAPTA 177
Query: 116 LRRNCPEGSRPTPAA 130
R G P A
Sbjct: 178 GRAPAVLGPGPPHCA 192
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 34.7 bits (78), Expect = 0.022
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 22/77 (28%)
Query: 38 LISAASPDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRAAARAPLPTPRP----- 92
L S SPD ++ PTP +SRRS ASP AP R+P+P P+P
Sbjct: 85 LDSQTSPDSPSSTPTPSPVSRRS---ASPEPAP-------------RSPVPPPKPSGSPC 128
Query: 93 -PWSRYRGDGRKNGTAS 108
P G +NG+AS
Sbjct: 129 TPLLPMAGVLAQNGSAS 145
>gi|169790811 SHC (Src homology 2 domain containing) transforming
protein 2 [Homo sapiens]
Length = 582
Score = 34.3 bits (77), Expect = 0.029
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 40 SAASPDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRG 99
+A + G QP P G L A+ GA P+C P P P SR RG
Sbjct: 53 AAGASGGADPQPEPAGPGGVPALAAAVLGACEPRCA-----------APCPLPALSRCRG 101
Query: 100 DGRKNGTASRGCA 112
G + RG A
Sbjct: 102 AGSRGSRGGRGAA 114
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 33.9 bits (76), Expect = 0.037
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 3 PRWKSSAVPA-----GSLSYFET-GEIFQERRSHGTLTLGHLISAASPDGRAAQP-TPLG 55
PR+ SS++P GS T G RS TL H S SP GR + P TPL
Sbjct: 68 PRYSSSSIPEPFGSRGSPRKAATDGADTPFGRSESAPTL-HPYSPLSPKGRPSSPRTPLY 126
Query: 56 LSRRSLLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRG 99
L + +PRP+ + RAP P P P R +G
Sbjct: 127 LQPDAYGSLDRATSPRPRAFDGAGSSLGRAPSPRPGPGPLRQQG 170
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 33.9 bits (76), Expect = 0.037
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 3 PRWKSSAVPA-----GSLSYFET-GEIFQERRSHGTLTLGHLISAASPDGRAAQP-TPLG 55
PR+ SS++P GS T G RS TL H S SP GR + P TPL
Sbjct: 68 PRYSSSSIPEPFGSRGSPRKAATDGADTPFGRSESAPTL-HPYSPLSPKGRPSSPRTPLY 126
Query: 56 LSRRSLLGASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRG 99
L + +PRP+ + RAP P P P R +G
Sbjct: 127 LQPDAYGSLDRATSPRPRAFDGAGSSLGRAPSPRPGPGPLRQQG 170
>gi|208431817 protein kinase-like protein SgK493 [Homo sapiens]
Length = 493
Score = 33.9 bits (76), Expect = 0.037
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 67 RGAPRPQCGWPGHR-----AAARAPLPTPRPPWSRYRGDG 101
RG P P G P R A LP PRPPW+R DG
Sbjct: 72 RGGPGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDG 111
>gi|14916427 naked cuticle homolog 2 [Homo sapiens]
Length = 451
Score = 33.5 bits (75), Expect = 0.049
Identities = 42/156 (26%), Positives = 63/156 (40%), Gaps = 38/156 (24%)
Query: 3 PRWKSSAVPAGSLSYFETGEIFQERRSHGTLTLGHLISAASPDGRA--AQPTPLGLSRRS 60
P+ ++S + A S S RRS + + H++ A+ P RA QP P G ++
Sbjct: 273 PQGRASHLQARSRSQEPDTHAVHHRRSQ--VLVEHVVPASEPAARALDTQPRPKGPEKQF 330
Query: 61 LLGASPRGAPRPQCGWPGHRAAARA------------------PLPTPRPP---WSRYRG 99
L SP+G+ +P G P + +A LP P PP RYR
Sbjct: 331 L--KSPKGSGKPP-GVPASSKSGKAFSYYLPAVLPPQAPQDGHHLPQPPPPPYGHKRYRQ 387
Query: 100 DGRKNGT------ASRGCADRSLRRNCPEGSRPTPA 129
GR+ + A + + R+ P PTPA
Sbjct: 388 KGREGHSPLKAPHAQPATVEHEVVRDLP----PTPA 419
>gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens]
Length = 782
Score = 33.5 bits (75), Expect = 0.049
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 67 RGAPRPQCGWPGH-----RAAARAPLPTPRP------PWSRYRGDGRKNG---TASRGCA 112
R PRP P R A P PTPRP P SR RG GR+ G +ASR
Sbjct: 611 RSTPRPTARAPTRAPRRGRPTAAPPAPTPRPARPTQQPGSR-RGGGRRRGRLNSASRAFR 669
Query: 113 DRSLRRNCPEG 123
D +R P G
Sbjct: 670 DGEVRLVRPAG 680
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.7 bits (73), Expect = 0.083
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 12 AGSLSYFETGEIFQERRSH--GTLTLGHLISAASPDGRAAQPTPLGLSRRSLLGASPRGA 69
AG+ + E G Q R+ G L G + AA GR + LG +RR++ A GA
Sbjct: 76 AGAAAGEEGGARLQATRTWPAGILEGGPQV-AARGGGRGWEGGGLG-ARRAVTAARRGGA 133
Query: 70 PRPQCGWPGHRAAARAPLPTPRPPWSRYR 98
RP G P AA R P P+ W R R
Sbjct: 134 SRPLAGEPWREAARRRPQQCPQ--WGRAR 160
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 32.3 bits (72), Expect = 0.11
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 63 GASPRGAPRPQCGWPGHRAAARAPLPTPRPPWSRYRGDGRKNGTASRGCADRSLRRNCPE 122
GA+P PR G P AAA AP PTP PP A R A + P
Sbjct: 105 GATPPAPPRAPRGAPA-AAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPG 163
Query: 123 GSRPTPAA 130
++P P A
Sbjct: 164 PAQPGPRA 171
Score = 28.5 bits (62), Expect = 1.6
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 40 SAASPDGRAAQPTPLGLSRRSLLGASPRGA-------PRPQCGWPGHRAAARAPLPTPRP 92
+AA+P A P P + +PR A P P PG RA APL P P
Sbjct: 123 AAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPP 182
>gi|239750916 PREDICTED: similar to hCG1803335 [Homo sapiens]
Length = 246
Score = 32.0 bits (71), Expect = 0.14
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 36 GHLISAASPDGRAAQPTPLGLSRRSLLGASPRGA---PRPQCGWPGHRAAARAPLPTPRP 92
GH +SA RA + P S+R S R P PQ + GHR +ARA P P
Sbjct: 179 GHRVSA-----RATESVPGPQSQRQGHRVSSRATESVPGPQSQFQGHRVSARATESVPGP 233
Query: 93 PWSRYRGDG 101
S+++G G
Sbjct: 234 Q-SQFQGAG 241
Score = 31.6 bits (70), Expect = 0.19
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 36 GHLISAASPDGRAAQPTPLGLSRRSLLGASPRG---APRPQCGWPGHRAAARAPLPTPRP 92
GH +SA RA + P S+R S R AP PQ + GHR +ARA P P
Sbjct: 139 GHRVSA-----RATESVPGPQSQRQGHRVSSRATESAPGPQSQFQGHRVSARATESVPGP 193
Query: 93 PWSR 96
R
Sbjct: 194 QSQR 197
Score = 29.3 bits (64), Expect = 0.92
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 36 GHLISAASPDGRAAQPTPLGLSRRSLLGASPRG---APRPQCGWPGHRAAARAPLPTPRP 92
GH +S+ RA + P S+R S R AP PQ GHR +ARA P P
Sbjct: 99 GHRVSS-----RATESVPGPQSQRQGHRVSARATESAPGPQSQCQGHRVSARATESVPGP 153
Query: 93 PWSR 96
R
Sbjct: 154 QSQR 157
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 32.0 bits (71), Expect = 0.14
Identities = 29/72 (40%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 40 SAASPDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRAAARAPLPTPRP--PWSRY 97
+AASPD P P SR A PR PRP AAR P P P P P
Sbjct: 290 AAASPD----LPQPAERSRGEPRPAEPRAPPRPP-------PAARRPPPPPAPGAPARPL 338
Query: 98 RGDGRKNGTASR 109
RG R +G A+R
Sbjct: 339 RG-RRSHGPAAR 349
>gi|239745314 PREDICTED: similar to hCG1803335 [Homo sapiens]
Length = 238
Score = 32.0 bits (71), Expect = 0.14
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 36 GHLISAASPDGRAAQPTPLGLSRRSLLGASPRG---APRPQCGWPGHRAAARA--PLPTP 90
GH +SA RA + P S+R S R AP PQ + GHR +ARA +P P
Sbjct: 139 GHRVSA-----RATESVPGPQSQRQGHRVSSRATESAPGPQSQFQGHRVSARATESVPGP 193
Query: 91 RPPWSRYRGDGRKNGTASRGCADR 114
+ +R R + S A R
Sbjct: 194 QSQCQGHRVSSRATESVSGSGASR 217
Score = 30.4 bits (67), Expect = 0.41
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 36 GHLISAASPDGRAAQPTPLGLSRRSLLGASPRG---APRPQCGWPGHRAAARAPLPTPRP 92
GH +S+ RA + P S+R S R AP PQ + GHR +ARA P P
Sbjct: 99 GHRVSS-----RATESVPGPQSQRQGHRVSSRATESAPGPQSQFQGHRVSARATESVPGP 153
Query: 93 PWSR 96
R
Sbjct: 154 QSQR 157
>gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo
sapiens]
Length = 159
Score = 31.6 bits (70), Expect = 0.19
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 38 LISAASPDGRAAQPTPLGL-------------SRRSLLGASPRGAPRPQCGWPGHRAAAR 84
++S+ P GRA P L L +RRS PR + P+ G GH AA
Sbjct: 35 IVSSVRPPGRAPGPGTLFLLGKGSPRLAQHPAARRSHGSRLPRTSGSPEEGVSGHGPAAA 94
Query: 85 APLP---TPRPP 93
A LP P PP
Sbjct: 95 ASLPRAQVPTPP 106
>gi|8923789 FEV (ETS oncogene family) [Homo sapiens]
Length = 238
Score = 31.6 bits (70), Expect = 0.19
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 44 PDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRAAARA--------PLPTPRPP 93
P G A P P GLS+ +L+ AS AP WPG AA A P P+ +PP
Sbjct: 164 PAGLAPLPFP-GLSKLNLMAASAGVAPAGFSYWPGPGPAATAAAATAALYPSPSLQPP 220
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 31.6 bits (70), Expect = 0.19
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 46 GRAAQPTPLG--LSRRSLLGASPRGAPRPQCGWPGHRAAA---RAPLPTPRPPWSRYRGD 100
G QP P G RS L S G P P WP R +P+PT P SR G
Sbjct: 1865 GNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGP 1924
Query: 101 G 101
G
Sbjct: 1925 G 1925
>gi|145966685 TLX1 divergent [Homo sapiens]
Length = 122
Score = 31.2 bits (69), Expect = 0.24
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 38 LISAASPDGRAAQPTPLGLSRRSLLGASPRGAP 70
L A G A+PTP G R GASP GAP
Sbjct: 23 LSQEAMGPGEGAEPTPWGYLRAEHWGASPSGAP 55
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 44 PDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPG---HRAAARAPLPTPRPP 93
P G AQPT G +S G++ P+P C PG H P+P P PP
Sbjct: 606 PPGPVAQPT--GPQPQSA-GSTSGPVPQPACPPPGPAPHPTGPPGPIPVPAPP 655
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 44 PDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPG---HRAAARAPLPTPRPP 93
P G AQPT G +S G++ P+P C PG H P+P P PP
Sbjct: 606 PPGPVAQPT--GPQPQSA-GSTSGPVPQPACPPPGPAPHPTGPPGPIPVPAPP 655
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 44 PDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPG---HRAAARAPLPTPRPP 93
P G AQPT G +S G++ P+P C PG H P+P P PP
Sbjct: 606 PPGPVAQPT--GPQPQSA-GSTSGPVPQPACPPPGPAPHPTGPPGPIPVPAPP 655
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 44 PDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPG---HRAAARAPLPTPRPP 93
P G AQPT G +S G++ P+P C PG H P+P P PP
Sbjct: 467 PPGPVAQPT--GPQPQSA-GSTSGPVPQPACPPPGPAPHPTGPPGPIPVPAPP 516
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 31.2 bits (69), Expect = 0.24
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 32 TLTLGHLISAASPDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGWPGHRAAARAPLPTPR 91
T +LG A G +P P ++RS+ ASP AP P PG AA LP P
Sbjct: 782 TRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAP-PATETPGPEKAA-TDLPAPE 839
Query: 92 PP 93
P
Sbjct: 840 TP 841
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 35 LGHLISAASPDGRAAQPTPLGLSRRSLLGASPRGAPRPQCGW--PGHRAAARAPLPTPRP 92
+G L + SP+ R P P A +P+ W H AAA P+P P
Sbjct: 645 IGGLSLSPSPERRKPPP--------------PDPATKPKVSWIHGKHSAAAAGRAPSPPP 690
Query: 93 PWSRYRGDGRKNGTASRGCADRSLRRNCPEGSRPTP 128
P S K + ++ P PTP
Sbjct: 691 PGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTP 726
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,015,109
Number of Sequences: 37866
Number of extensions: 452854
Number of successful extensions: 2376
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 260
Number of HSP's that attempted gapping in prelim test: 2144
Number of HSP's gapped (non-prelim): 484
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.