Guide to the Human Genome
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Search of human proteins with 239741438

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo
sapiens]
         (145 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752975 PREDICTED: hypothetical protein [Homo sapiens]           306   5e-84
gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo ...   306   5e-84
gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo ...   306   5e-84
gi|239755412 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|149999615 variable charge, X-linked 3B [Homo sapiens]               32   0.14 
gi|49355828 variable charge, Y-linked 1B [Homo sapiens]                32   0.19 
gi|4759304 variable charge, Y-linked [Homo sapiens]                    32   0.19 
gi|48762947 variable charge, X-linked 3A [Homo sapiens]                30   0.71 
gi|28373107 ATPase, Ca++ transporting, ubiquitous isoform d [Hom...    30   0.71 
gi|239757282 PREDICTED: similar to Fc fragment of IgG binding pr...    30   0.93 
gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo ...    30   0.93 
gi|154146262 Fc fragment of IgG binding protein [Homo sapiens]         30   0.93 
gi|239750431 PREDICTED: hypothetical protein XP_002347361 [Homo ...    29   1.6  
gi|124378039 SEC16 homolog A [Homo sapiens]                            28   2.1  
gi|31317270 WD repeat and FYVE domain containing 3 isoform 3 [Ho...    28   2.1  
gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Ho...    28   2.1  
gi|66932943 variable charge, X chromosome [Homo sapiens]               28   2.1  
gi|49619239 variable charge, X-linked 2 [Homo sapiens]                 28   2.1  
gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo ...    28   3.5  
gi|169210300 PREDICTED: hypothetical protein LOC100131303 [Homo ...    27   6.0  
gi|169210470 PREDICTED: hypothetical protein LOC100131303 [Homo ...    27   6.0  
gi|169209989 PREDICTED: hypothetical protein LOC100131303 [Homo ...    27   6.0  
gi|239756311 PREDICTED: hypothetical protein [Homo sapiens]            27   7.9  
gi|98991767 mitogen-activated protein kinase kinase kinase 7 int...    27   7.9  

>gi|239752975 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 145

 Score =  306 bits (783), Expect = 5e-84
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60
           MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC
Sbjct: 1   MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60

Query: 61  QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120
           QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP
Sbjct: 61  QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120

Query: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145
           IALEVEVLQVGVDWGDLLQLVVGEV
Sbjct: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145


>gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo
           sapiens]
          Length = 145

 Score =  306 bits (783), Expect = 5e-84
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60
           MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC
Sbjct: 1   MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60

Query: 61  QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120
           QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP
Sbjct: 61  QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120

Query: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145
           IALEVEVLQVGVDWGDLLQLVVGEV
Sbjct: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145


>gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo
           sapiens]
          Length = 145

 Score =  306 bits (783), Expect = 5e-84
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60
           MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC
Sbjct: 1   MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60

Query: 61  QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120
           QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP
Sbjct: 61  QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120

Query: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145
           IALEVEVLQVGVDWGDLLQLVVGEV
Sbjct: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145


>gi|239755412 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 305

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 55  PPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGEL 114
           P +TR +   DLDE G   A G  G    AL    + A+H  L E  DV  GA+  + ++
Sbjct: 234 PRATRAR---DLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQV 290

Query: 115 CLTI 118
            + +
Sbjct: 291 AVEL 294


>gi|149999615 variable charge, X-linked 3B [Homo sapiens]
          Length = 216

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLG 98
          PAKAK   + K      PS   +  + + + GKA   GR G+ GAA  +  V A   + G
Sbjct: 11 PAKAKEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTAPEAESG 70


>gi|49355828 variable charge, Y-linked 1B [Homo sapiens]
          Length = 125

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLG 98
          PAKAK   + K      PS   +  + + E G+A   GR G+ GAA  +  V A   + G
Sbjct: 11 PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESG 70


>gi|4759304 variable charge, Y-linked [Homo sapiens]
          Length = 125

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLG 98
          PAKAK   + K      PS   +  + + E G+A   GR G+ GAA  +  V A   + G
Sbjct: 11 PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESG 70


>gi|48762947 variable charge, X-linked 3A [Homo sapiens]
          Length = 186

 Score = 30.0 bits (66), Expect = 0.71
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLG 98
          PAKA    + K      PS   +  + + + GKA   GR G+ GAA  +  V A   + G
Sbjct: 11 PAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTAPEAESG 70


>gi|28373107 ATPase, Ca++ transporting, ubiquitous isoform d [Homo
            sapiens]
          Length = 1044

 Score = 30.0 bits (66), Expect = 0.71
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 30   SVTWSILDLPAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGK 71
            S  WS   L     P+H          S+RCQ CS+ +EAGK
Sbjct: 1005 SQAWSRQPLTTSWTPDHTG---ARDTASSRCQSCSEREEAGK 1043


>gi|239757282 PREDICTED: similar to Fc fragment of IgG binding
           protein [Homo sapiens]
          Length = 1403

 Score = 29.6 bits (65), Expect = 0.93
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 1   MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
           +  A+GC   ++ P P   T  +++  G P      S  D P        A CHG  PP+
Sbjct: 636 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 688

Query: 58  TRCQGCSDLDEAGKAQAEGRVGR--HGAALDLVPVQAQHLQLGE 99
              QGC  LD     Q +G  G      A  +   QA   QLGE
Sbjct: 689 QYFQGCL-LD---ACQVQGHPGGLCPAVATYVAACQAAGAQLGE 728


>gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo
            sapiens]
          Length = 3003

 Score = 29.6 bits (65), Expect = 0.93
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 1    MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
            +  A+GC   ++ P P   T  +++  G P      S  D P        A CHG  PP+
Sbjct: 2236 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 2288

Query: 58   TRCQGCSDLDEAGKAQAEGRVGR--HGAALDLVPVQAQHLQLGE 99
               QGC  LD     Q +G  G      A  +   QA   QLGE
Sbjct: 2289 QYFQGCL-LD---ACQVQGHPGGLCPAVATYVAACQAAGAQLGE 2328


>gi|154146262 Fc fragment of IgG binding protein [Homo sapiens]
          Length = 5405

 Score = 29.6 bits (65), Expect = 0.93
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 1    MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
            +  A+GC   ++ P P   T  +++  G P      S  D P        A CHG  PP+
Sbjct: 4636 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 4688

Query: 58   TRCQGCSDLDEAGKAQAEGRVGR--HGAALDLVPVQAQHLQLGE 99
               QGC  LD     Q +G  G      A  +   QA   QLGE
Sbjct: 4689 QYFQGCL-LD---ACQVQGHPGGLCPAVATYVAACQAAGAQLGE 4728



 Score = 27.7 bits (60), Expect = 3.5
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 1    MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
            +  A+GC   ++ P P   T  +++  G P      S  D P        A CHG  PP+
Sbjct: 2234 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 2286

Query: 58   TRCQGC 63
               QGC
Sbjct: 2287 QYFQGC 2292



 Score = 27.7 bits (60), Expect = 3.5
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 1    MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
            +  A+GC   ++ P P   T  +++  G P      S  D P        A CHG  PP+
Sbjct: 3435 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 3487

Query: 58   TRCQGC 63
               QGC
Sbjct: 3488 QYFQGC 3493


>gi|239750431 PREDICTED: hypothetical protein XP_002347361 [Homo
           sapiens]
          Length = 203

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 27  PWTSVTWSILDLPAKAKPNHQAKCHGGS 54
           PWTS  W  L LPA     H  +C   S
Sbjct: 89  PWTSAGWGRLPLPAPPPSPHGGECRSWS 116


>gi|124378039 SEC16 homolog A [Homo sapiens]
          Length = 2357

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 38  LPAKAKPNHQAKCHGGSPPSTRCQGCSD-LDEAGKAQAEGRVGRHGAALDLVPVQAQHLQ 96
           LP  A P H A CH G+P +T      D +  +  +++ GR+       +LV    Q  +
Sbjct: 492 LPGPAVPRHGAVCHTGAPDATLHTVHPDSVSSSYSSRSHGRLSGSARPQELVGTFIQQ-E 550

Query: 97  LGEVHDVHHGA 107
           +G+  D   G+
Sbjct: 551 VGKPEDEASGS 561


>gi|31317270 WD repeat and FYVE domain containing 3 isoform 3 [Homo
           sapiens]
          Length = 281

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 32  TWSILDLPAKAKPNHQAKCHGGSPPSTRCQGCS 64
           +WS+ D P ++  +H  K  GG      C GCS
Sbjct: 191 SWSVSDQPGRSAADHWVKDEGGD----SCSGCS 219


>gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Homo
            sapiens]
          Length = 3526

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 32   TWSILDLPAKAKPNHQAKCHGGSPPSTRCQGCS 64
            +WS+ D P ++  +H  K  GG      C GCS
Sbjct: 3436 SWSVSDQPGRSAADHWVKDEGGD----SCSGCS 3464


>gi|66932943 variable charge, X chromosome [Homo sapiens]
          Length = 206

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQA 92
          PAKA    + K      PS   +  + + + GKA   GR G+ GAA  +  V A
Sbjct: 11 PAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTA 64


>gi|49619239 variable charge, X-linked 2 [Homo sapiens]
          Length = 139

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQA 92
          PAKA    + K      PS   +  + + + GKA   GR G+ GAA  +  V A
Sbjct: 11 PAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTA 64


>gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo
          sapiens]
          Length = 138

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 44 PNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVG 79
          P     C GG  P TR + CS   E  K +A GR G
Sbjct: 41 PTKPLICSGGFIPGTRPRLCSREGEGRKGEALGRQG 76


>gi|169210300 PREDICTED: hypothetical protein LOC100131303 [Homo
          sapiens]
          Length = 123

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 3  SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33
          SA   +   +PP P +    YRGC  T V W
Sbjct: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50


>gi|169210470 PREDICTED: hypothetical protein LOC100131303 [Homo
          sapiens]
          Length = 123

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 3  SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33
          SA   +   +PP P +    YRGC  T V W
Sbjct: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50


>gi|169209989 PREDICTED: hypothetical protein LOC100131303 [Homo
          sapiens]
          Length = 123

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 3  SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33
          SA   +   +PP P +    YRGC  T V W
Sbjct: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50


>gi|239756311 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 24/95 (25%)

Query: 70  GKAQAEGRVGRHGAALDLVPVQ-----AQHLQLGEVH---DVH-----------HGAEAA 110
           G+A+A G VG+HG A+     Q     AQ  Q G  H   +VH           HG++ A
Sbjct: 43  GRARARGLVGQHGGAVLCPQGQARARGAQAAQAGRAHVAAEVHVQCLQRAPVRRHGSQRA 102

Query: 111 DGELCLTIDPIALEVEVLQVGVDWGDLLQLVVGEV 145
            G+         L+ +  Q         Q VVG V
Sbjct: 103 VGDA-----RAVLQAQCAQAWAAAQQARQAVVGNV 132


>gi|98991767 mitogen-activated protein kinase kinase kinase 7
           interacting protein 3 [Homo sapiens]
          Length = 712

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 14  PNPTYRKEDYRGCPWTSVTWSILDLPA 40
           P    R EDY G PW   + + L+ PA
Sbjct: 673 PRTQPRDEDYEGAPWNCDSCTFLNHPA 699


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,336,495
Number of Sequences: 37866
Number of extensions: 271345
Number of successful extensions: 676
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 26
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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