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Search of human proteins with 239741438
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo
sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752975 PREDICTED: hypothetical protein [Homo sapiens] 306 5e-84
gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo ... 306 5e-84
gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo ... 306 5e-84
gi|239755412 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|149999615 variable charge, X-linked 3B [Homo sapiens] 32 0.14
gi|49355828 variable charge, Y-linked 1B [Homo sapiens] 32 0.19
gi|4759304 variable charge, Y-linked [Homo sapiens] 32 0.19
gi|48762947 variable charge, X-linked 3A [Homo sapiens] 30 0.71
gi|28373107 ATPase, Ca++ transporting, ubiquitous isoform d [Hom... 30 0.71
gi|239757282 PREDICTED: similar to Fc fragment of IgG binding pr... 30 0.93
gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo ... 30 0.93
gi|154146262 Fc fragment of IgG binding protein [Homo sapiens] 30 0.93
gi|239750431 PREDICTED: hypothetical protein XP_002347361 [Homo ... 29 1.6
gi|124378039 SEC16 homolog A [Homo sapiens] 28 2.1
gi|31317270 WD repeat and FYVE domain containing 3 isoform 3 [Ho... 28 2.1
gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Ho... 28 2.1
gi|66932943 variable charge, X chromosome [Homo sapiens] 28 2.1
gi|49619239 variable charge, X-linked 2 [Homo sapiens] 28 2.1
gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo ... 28 3.5
gi|169210300 PREDICTED: hypothetical protein LOC100131303 [Homo ... 27 6.0
gi|169210470 PREDICTED: hypothetical protein LOC100131303 [Homo ... 27 6.0
gi|169209989 PREDICTED: hypothetical protein LOC100131303 [Homo ... 27 6.0
gi|239756311 PREDICTED: hypothetical protein [Homo sapiens] 27 7.9
gi|98991767 mitogen-activated protein kinase kinase kinase 7 int... 27 7.9
>gi|239752975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 306 bits (783), Expect = 5e-84
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60
MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC
Sbjct: 1 MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60
Query: 61 QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120
QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP
Sbjct: 61 QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120
Query: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145
IALEVEVLQVGVDWGDLLQLVVGEV
Sbjct: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145
>gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo
sapiens]
Length = 145
Score = 306 bits (783), Expect = 5e-84
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60
MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC
Sbjct: 1 MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60
Query: 61 QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120
QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP
Sbjct: 61 QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120
Query: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145
IALEVEVLQVGVDWGDLLQLVVGEV
Sbjct: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145
>gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo
sapiens]
Length = 145
Score = 306 bits (783), Expect = 5e-84
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60
MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC
Sbjct: 1 MSSAEGCLSLIAPPNPTYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPSTRC 60
Query: 61 QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120
QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP
Sbjct: 61 QGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGELCLTIDP 120
Query: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145
IALEVEVLQVGVDWGDLLQLVVGEV
Sbjct: 121 IALEVEVLQVGVDWGDLLQLVVGEV 145
>gi|239755412 PREDICTED: hypothetical protein [Homo sapiens]
Length = 305
Score = 32.3 bits (72), Expect = 0.14
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 55 PPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGEL 114
P +TR + DLDE G A G G AL + A+H L E DV GA+ + ++
Sbjct: 234 PRATRAR---DLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQV 290
Query: 115 CLTI 118
+ +
Sbjct: 291 AVEL 294
>gi|149999615 variable charge, X-linked 3B [Homo sapiens]
Length = 216
Score = 32.3 bits (72), Expect = 0.14
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLG 98
PAKAK + K PS + + + + GKA GR G+ GAA + V A + G
Sbjct: 11 PAKAKEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTAPEAESG 70
>gi|49355828 variable charge, Y-linked 1B [Homo sapiens]
Length = 125
Score = 32.0 bits (71), Expect = 0.19
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLG 98
PAKAK + K PS + + + E G+A GR G+ GAA + V A + G
Sbjct: 11 PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESG 70
>gi|4759304 variable charge, Y-linked [Homo sapiens]
Length = 125
Score = 32.0 bits (71), Expect = 0.19
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLG 98
PAKAK + K PS + + + E G+A GR G+ GAA + V A + G
Sbjct: 11 PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESG 70
>gi|48762947 variable charge, X-linked 3A [Homo sapiens]
Length = 186
Score = 30.0 bits (66), Expect = 0.71
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLG 98
PAKA + K PS + + + + GKA GR G+ GAA + V A + G
Sbjct: 11 PAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTAPEAESG 70
>gi|28373107 ATPase, Ca++ transporting, ubiquitous isoform d [Homo
sapiens]
Length = 1044
Score = 30.0 bits (66), Expect = 0.71
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 30 SVTWSILDLPAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGK 71
S WS L P+H S+RCQ CS+ +EAGK
Sbjct: 1005 SQAWSRQPLTTSWTPDHTG---ARDTASSRCQSCSEREEAGK 1043
>gi|239757282 PREDICTED: similar to Fc fragment of IgG binding
protein [Homo sapiens]
Length = 1403
Score = 29.6 bits (65), Expect = 0.93
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 1 MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
+ A+GC ++ P P T +++ G P S D P A CHG PP+
Sbjct: 636 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 688
Query: 58 TRCQGCSDLDEAGKAQAEGRVGR--HGAALDLVPVQAQHLQLGE 99
QGC LD Q +G G A + QA QLGE
Sbjct: 689 QYFQGCL-LD---ACQVQGHPGGLCPAVATYVAACQAAGAQLGE 728
>gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo
sapiens]
Length = 3003
Score = 29.6 bits (65), Expect = 0.93
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 1 MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
+ A+GC ++ P P T +++ G P S D P A CHG PP+
Sbjct: 2236 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 2288
Query: 58 TRCQGCSDLDEAGKAQAEGRVGR--HGAALDLVPVQAQHLQLGE 99
QGC LD Q +G G A + QA QLGE
Sbjct: 2289 QYFQGCL-LD---ACQVQGHPGGLCPAVATYVAACQAAGAQLGE 2328
>gi|154146262 Fc fragment of IgG binding protein [Homo sapiens]
Length = 5405
Score = 29.6 bits (65), Expect = 0.93
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 1 MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
+ A+GC ++ P P T +++ G P S D P A CHG PP+
Sbjct: 4636 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 4688
Query: 58 TRCQGCSDLDEAGKAQAEGRVGR--HGAALDLVPVQAQHLQLGE 99
QGC LD Q +G G A + QA QLGE
Sbjct: 4689 QYFQGCL-LD---ACQVQGHPGGLCPAVATYVAACQAAGAQLGE 4728
Score = 27.7 bits (60), Expect = 3.5
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 1 MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
+ A+GC ++ P P T +++ G P S D P A CHG PP+
Sbjct: 2234 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 2286
Query: 58 TRCQGC 63
QGC
Sbjct: 2287 QYFQGC 2292
Score = 27.7 bits (60), Expect = 3.5
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 1 MSSAEGCLSLIAPPNP---TYRKEDYRGCPWTSVTWSILDLPAKAKPNHQAKCHGGSPPS 57
+ A+GC ++ P P T +++ G P S D P A CHG PP+
Sbjct: 3435 VGGAQGCGECVSKPCPSPCTPEQQESFGGPDACGVISATDGPL-------APCHGLVPPA 3487
Query: 58 TRCQGC 63
QGC
Sbjct: 3488 QYFQGC 3493
>gi|239750431 PREDICTED: hypothetical protein XP_002347361 [Homo
sapiens]
Length = 203
Score = 28.9 bits (63), Expect = 1.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 27 PWTSVTWSILDLPAKAKPNHQAKCHGGS 54
PWTS W L LPA H +C S
Sbjct: 89 PWTSAGWGRLPLPAPPPSPHGGECRSWS 116
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 28.5 bits (62), Expect = 2.1
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 38 LPAKAKPNHQAKCHGGSPPSTRCQGCSD-LDEAGKAQAEGRVGRHGAALDLVPVQAQHLQ 96
LP A P H A CH G+P +T D + + +++ GR+ +LV Q +
Sbjct: 492 LPGPAVPRHGAVCHTGAPDATLHTVHPDSVSSSYSSRSHGRLSGSARPQELVGTFIQQ-E 550
Query: 97 LGEVHDVHHGA 107
+G+ D G+
Sbjct: 551 VGKPEDEASGS 561
>gi|31317270 WD repeat and FYVE domain containing 3 isoform 3 [Homo
sapiens]
Length = 281
Score = 28.5 bits (62), Expect = 2.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 32 TWSILDLPAKAKPNHQAKCHGGSPPSTRCQGCS 64
+WS+ D P ++ +H K GG C GCS
Sbjct: 191 SWSVSDQPGRSAADHWVKDEGGD----SCSGCS 219
>gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Homo
sapiens]
Length = 3526
Score = 28.5 bits (62), Expect = 2.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 32 TWSILDLPAKAKPNHQAKCHGGSPPSTRCQGCS 64
+WS+ D P ++ +H K GG C GCS
Sbjct: 3436 SWSVSDQPGRSAADHWVKDEGGD----SCSGCS 3464
>gi|66932943 variable charge, X chromosome [Homo sapiens]
Length = 206
Score = 28.5 bits (62), Expect = 2.1
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQA 92
PAKA + K PS + + + + GKA GR G+ GAA + V A
Sbjct: 11 PAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTA 64
>gi|49619239 variable charge, X-linked 2 [Homo sapiens]
Length = 139
Score = 28.5 bits (62), Expect = 2.1
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 39 PAKAKPNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQA 92
PAKA + K PS + + + + GKA GR G+ GAA + V A
Sbjct: 11 PAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTA 64
>gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo
sapiens]
Length = 138
Score = 27.7 bits (60), Expect = 3.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 44 PNHQAKCHGGSPPSTRCQGCSDLDEAGKAQAEGRVG 79
P C GG P TR + CS E K +A GR G
Sbjct: 41 PTKPLICSGGFIPGTRPRLCSREGEGRKGEALGRQG 76
>gi|169210300 PREDICTED: hypothetical protein LOC100131303 [Homo
sapiens]
Length = 123
Score = 26.9 bits (58), Expect = 6.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 3 SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33
SA + +PP P + YRGC T V W
Sbjct: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50
>gi|169210470 PREDICTED: hypothetical protein LOC100131303 [Homo
sapiens]
Length = 123
Score = 26.9 bits (58), Expect = 6.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 3 SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33
SA + +PP P + YRGC T V W
Sbjct: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50
>gi|169209989 PREDICTED: hypothetical protein LOC100131303 [Homo
sapiens]
Length = 123
Score = 26.9 bits (58), Expect = 6.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 3 SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33
SA + +PP P + YRGC T V W
Sbjct: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50
>gi|239756311 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 26.6 bits (57), Expect = 7.9
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 70 GKAQAEGRVGRHGAALDLVPVQ-----AQHLQLGEVH---DVH-----------HGAEAA 110
G+A+A G VG+HG A+ Q AQ Q G H +VH HG++ A
Sbjct: 43 GRARARGLVGQHGGAVLCPQGQARARGAQAAQAGRAHVAAEVHVQCLQRAPVRRHGSQRA 102
Query: 111 DGELCLTIDPIALEVEVLQVGVDWGDLLQLVVGEV 145
G+ L+ + Q Q VVG V
Sbjct: 103 VGDA-----RAVLQAQCAQAWAAAQQARQAVVGNV 132
>gi|98991767 mitogen-activated protein kinase kinase kinase 7
interacting protein 3 [Homo sapiens]
Length = 712
Score = 26.6 bits (57), Expect = 7.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 14 PNPTYRKEDYRGCPWTSVTWSILDLPA 40
P R EDY G PW + + L+ PA
Sbjct: 673 PRTQPRDEDYEGAPWNCDSCTFLNHPA 699
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,336,495
Number of Sequences: 37866
Number of extensions: 271345
Number of successful extensions: 676
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 26
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.