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Search of human proteins with 239741346
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741346 PREDICTED: hypothetical protein XP_002342203 [Homo
sapiens]
(96 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752944 PREDICTED: hypothetical protein [Homo sapiens] 195 6e-51
gi|239747474 PREDICTED: hypothetical protein XP_002347534 [Homo ... 195 6e-51
gi|239741346 PREDICTED: hypothetical protein XP_002342203 [Homo ... 195 6e-51
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|239756116 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo ... 35 0.017
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 33 0.064
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 33 0.064
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 32 0.11
gi|147902746 MEX3A protein [Homo sapiens] 32 0.11
gi|166362732 ELK1 protein [Homo sapiens] 32 0.14
gi|166362730 ELK1 protein [Homo sapiens] 32 0.14
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 32 0.14
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 32 0.14
gi|82659105 protein tyrosine phosphatase-like, member A [Homo sa... 32 0.14
gi|239755698 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239750195 PREDICTED: hypothetical protein XP_002347307 [Homo ... 31 0.19
gi|239744500 PREDICTED: hypothetical protein XP_002343173 [Homo ... 31 0.19
gi|73476377 LBXCOR1 homolog [Homo sapiens] 31 0.19
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens] 31 0.19
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 31 0.19
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 31 0.19
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens] 31 0.19
gi|4504191 mutS homolog 6 [Homo sapiens] 31 0.24
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] 31 0.24
gi|122937233 discs, large (Drosophila) homolog-associated protei... 31 0.24
gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens] 31 0.24
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 31 0.24
gi|194097411 transmembrane protein 119 [Homo sapiens] 31 0.24
>gi|239752944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 96
Score = 195 bits (496), Expect = 6e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60
MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG
Sbjct: 1 MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60
Query: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS
Sbjct: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
>gi|239747474 PREDICTED: hypothetical protein XP_002347534 [Homo
sapiens]
Length = 96
Score = 195 bits (496), Expect = 6e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60
MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG
Sbjct: 1 MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60
Query: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS
Sbjct: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
>gi|239741346 PREDICTED: hypothetical protein XP_002342203 [Homo
sapiens]
Length = 96
Score = 195 bits (496), Expect = 6e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60
MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG
Sbjct: 1 MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60
Query: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS
Sbjct: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 36.2 bits (82), Expect = 0.006
Identities = 31/79 (39%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 13 SISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGGATGGTASSPGVA 72
S +TA LP RR T S R L GPDLG G GGGA G + G
Sbjct: 187 SSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGG------GGGAGAGAGAGAGAQ 240
Query: 73 PSLAPAAGRCSASMAPTPL 91
S A AAG C + PL
Sbjct: 241 RSAAEAAG-CLGCLPRLPL 258
>gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 34.7 bits (78), Expect = 0.017
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 37 PRCLLLGSGPDLGIGPEAAVAGGGATGGT-------ASSPGVAPSLAPAAGRCSASMA 87
P CLL P LG A AGGGAT G+ ++P S P++ R A A
Sbjct: 66 PACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPA 123
>gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
sapiens]
Length = 194
Score = 34.7 bits (78), Expect = 0.017
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 37 PRCLLLGSGPDLGIGPEAAVAGGGATGGT-------ASSPGVAPSLAPAAGRCSASMA 87
P CLL P LG A AGGGAT G+ ++P S P++ R A A
Sbjct: 66 PACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPA 123
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 44 SGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTP 90
SG AA G G GG S+P AP+ APA G SA P P
Sbjct: 72 SGSAQAASSPAASVGTGVAGGAVSTPAPAPASAPAPGP-SAGPPPGP 117
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 44 SGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTP 90
SG AA G G GG S+P AP+ APA G SA P P
Sbjct: 72 SGSAQAASSPAASVGTGVAGGAVSTPAPAPASAPAPGP-SAGPPPGP 117
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/39 (43%), Positives = 18/39 (46%)
Query: 42 LGSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAG 80
LG P LG G GGGA GG+ G AP P G
Sbjct: 157 LGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRG 195
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 39 CLL-LGSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPLT 92
CLL LG P G + GGGA A+ P AP PAA + + AP T
Sbjct: 46 CLLGLGEPPAPTAGEDGGGGGGGAPAQPAAPPQPAPPPPPAAPPAAPTAAPAAQT 100
>gi|166362732 ELK1 protein [Homo sapiens]
Length = 428
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 37 PRCLLLGSGPDL--GIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRS 94
PR L L P L G GPE G +G A P + PSL P + P+ L S
Sbjct: 316 PRDLELPLSPSLLGGPGPERTPGSGSGSGLQAPGPALTPSLLPTHTLTPVLLTPSSLPPS 375
>gi|166362730 ELK1 protein [Homo sapiens]
Length = 428
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 37 PRCLLLGSGPDL--GIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRS 94
PR L L P L G GPE G +G A P + PSL P + P+ L S
Sbjct: 316 PRDLELPLSPSLLGGPGPERTPGSGSGSGLQAPGPALTPSLLPTHTLTPVLLTPSSLPPS 375
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 52 PEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPL 91
P A A GAT GTA+ PG PS A SAS PTPL
Sbjct: 277 PGPAPAAAGATRGTAAPPGRDPS---AWFLDSASACPTPL 313
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 52 PEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPL 91
P A A GAT GTA+ PG PS A SAS PTPL
Sbjct: 230 PGPAPAAAGATRGTAAPPGRDPS---AWFLDSASACPTPL 266
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 52 PEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPL 91
P A A GAT GTA+ PG PS A SAS PTPL
Sbjct: 277 PGPAPAAAGATRGTAAPPGRDPS---AWFLDSASACPTPL 313
>gi|82659105 protein tyrosine phosphatase-like, member A [Homo
sapiens]
Length = 288
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 53 EAAVAGGGA-TGGTASSPGVAPSLAPAAGRCSASMA 87
EAA AG G+ G A SP L+P + RC+A+MA
Sbjct: 6 EAAAAGSGSRAAGWAGSPPTLLPLSPTSPRCAATMA 41
>gi|239755698 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 49 GIGPEAAVAGGGATGGTASSPGVAP---------SLAPAAGRCSASMA 87
G G ++ GGG+ GG S P V + PA+GRC S++
Sbjct: 57 GSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLS 104
>gi|239750195 PREDICTED: hypothetical protein XP_002347307 [Homo
sapiens]
Length = 117
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 49 GIGPEAAVAGGGATGGTASSPGVAP---------SLAPAAGRCSASMA 87
G G ++ GGG+ GG S P V + PA+GRC S++
Sbjct: 57 GSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLS 104
>gi|239744500 PREDICTED: hypothetical protein XP_002343173 [Homo
sapiens]
Length = 117
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 49 GIGPEAAVAGGGATGGTASSPGVAP---------SLAPAAGRCSASMA 87
G G ++ GGG+ GG S P V + PA+GRC S++
Sbjct: 57 GSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLS 104
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 41 LLGSGPDLGIGPEAAVAGGGA-TGGTASSPGVAPSLAPAAG 80
+LG+G G GP GGGA TGG A PG A L P AG
Sbjct: 369 VLGAGEPKG-GPGTGSGGGGAGTGGGAGGPG-ASHLPPGAG 407
>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
Length = 474
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 26 ENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGGATGGTASSPG----VAPSLAPAAGR 81
++LLT W + P + P G G E G GG A++P P L+P+
Sbjct: 194 DHLLTASWGADP---VPTKAP--GEGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSA 248
Query: 82 CSASMAPTP 90
C+A P+P
Sbjct: 249 CTAVQEPSP 257
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 43 GSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMA 87
G G D G G AGGG GG++SSP + A +A +A+ A
Sbjct: 136 GPGDDSGGG---GGAGGGGGGGSSSSPAATSAAATSAAAAAAAAA 177
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 39 CLLLGSGPDLGIGPEAAVAGGGATG--GTASSPGVAPSLAPAAGRCSASMAPTPL 91
C L G GPDL + GGG G G A++P +P+ +P + P+P+
Sbjct: 678 CALAGPGPDL------LLQGGGCRGFEGAAANPAPSPASSPCSDYTVDFRPPSPI 726
>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
Length = 496
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 43 GSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAP-AAGRCS 83
GSG G GPE A AG G+ G ++ A SL P A G C+
Sbjct: 165 GSGAGGGEGPEGAGAGLGSWGLAEAAAAAAASLPPFACGACA 206
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 46 PDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
P L +A+ G A++PG +PS A A P PL RSAS
Sbjct: 15 PALSDANKASARASREGGRAAAAPGASPSPGGDAAWSEAGPGPRPLARSAS 65
>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
Length = 466
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 34 SSVPRCLLLGSGPDLGIGPEAAVAGGGATGGTASSPG 70
S PRCL GS P L GP+ GGG G +SPG
Sbjct: 17 SEEPRCLSPGSAPSL--GPD----GGGGGSGLRASPG 47
>gi|122937233 discs, large (Drosophila) homolog-associated protein
3 [Homo sapiens]
Length = 979
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 40 LLLGSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAP 77
L L GP +GPE AG G GG+++ P + P P
Sbjct: 63 LSLSEGPS--VGPEGGPAGAGVGGGSSTFPRMYPGQGP 98
>gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]
Length = 572
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 49 GIGPEAAVAGGGATGGTASSPGVAPSLAPAAG 80
G P+++ G A GG S+ G APS PA G
Sbjct: 13 GPRPDSSAGGSSAGGGGGSAGGAAPSEGPAVG 44
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 43 GSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAP 77
G PD G +A GGG+ GG A S G A P
Sbjct: 13 GPRPDSSAGGSSAGGGGGSAGGAAPSEGPAVGGVP 47
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 46 PDLGIGPEAAVAGGGATGGTAS-SPGVAPSLAPAAGRCSASMAPTP 90
P +G+GP + G + A+ +PG A + A AA +A+ PTP
Sbjct: 14 PGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTP 59
>gi|194097411 transmembrane protein 119 [Homo sapiens]
Length = 283
Score = 30.8 bits (68), Expect = 0.24
Identities = 27/61 (44%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 40 LLLGSGP--DLGIGPEAA-----VAGGG-ATGGTASSPGVAPSLAPAAGRCSASMAPTPL 91
LLLGS P D P A VAG G A G +ASSP + P PA SM P P+
Sbjct: 15 LLLGSVPATDARSVPLKATFLEDVAGSGEAEGSSASSPSLPPPWTPALS--PTSMGPQPI 72
Query: 92 T 92
T
Sbjct: 73 T 73
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,691,424
Number of Sequences: 37866
Number of extensions: 244097
Number of successful extensions: 2091
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 1752
Number of HSP's gapped (non-prelim): 444
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.