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Search of human proteins with 239741327
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741327 PREDICTED: hypothetical protein XP_002342174 [Homo
sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752904 PREDICTED: hypothetical protein [Homo sapiens] 604 e-173
gi|239747453 PREDICTED: hypothetical protein XP_002347537 [Homo ... 604 e-173
gi|239741327 PREDICTED: hypothetical protein XP_002342174 [Homo ... 604 e-173
gi|23510413 sorting nexin 26 [Homo sapiens] 37 0.015
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi... 35 0.057
gi|4557779 myocilin [Homo sapiens] 34 0.13
gi|156104862 ankyrin repeat domain 38 [Homo sapiens] 33 0.22
gi|84490388 R-spondin1 [Homo sapiens] 33 0.28
gi|153266907 gamma-glutamyltransferase 5 isoform c [Homo sapiens] 33 0.28
gi|153266885 gamma-glutamyltransferase 5 isoform b [Homo sapiens] 33 0.28
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.37
gi|13569901 TSC22 domain family, member 4 [Homo sapiens] 33 0.37
gi|169183882 PREDICTED: hypothetical protein [Homo sapiens] 32 0.48
gi|239754626 PREDICTED: hypothetical protein [Homo sapiens] 32 0.48
gi|122937472 bicaudal C homolog 1 [Homo sapiens] 32 0.63
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.63
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 32 0.63
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 32 0.82
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 32 0.82
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.82
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 31 1.1
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|40806216 visual system homeobox 1 isoform b [Homo sapiens] 31 1.1
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 31 1.1
gi|239757934 PREDICTED: hypothetical protein [Homo sapiens] 30 1.8
gi|239756477 PREDICTED: similar to predicted protein [Homo sapiens] 30 1.8
gi|239752441 PREDICTED: hypothetical protein XP_002348273 [Homo ... 30 1.8
gi|239751001 PREDICTED: similar to predicted protein [Homo sapiens] 30 1.8
gi|239745404 PREDICTED: hypothetical protein XP_002343488 [Homo ... 30 1.8
>gi|239752904 PREDICTED: hypothetical protein [Homo sapiens]
Length = 282
Score = 604 bits (1557), Expect = e-173
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MVAQKTVKVPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDS 60
MVAQKTVKVPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDS
Sbjct: 1 MVAQKTVKVPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDS 60
Query: 61 SAQFLLLLPPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWL 120
SAQFLLLLPPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWL
Sbjct: 61 SAQFLLLLPPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWL 120
Query: 121 QGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV 180
QGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV
Sbjct: 121 QGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV 180
Query: 181 HSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRVQDPGGSTA 240
HSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRVQDPGGSTA
Sbjct: 181 HSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRVQDPGGSTA 240
Query: 241 QFPLMMDRPPGPRSAAGQRLHSHQDACQSQGSHHSRGSGESE 282
QFPLMMDRPPGPRSAAGQRLHSHQDACQSQGSHHSRGSGESE
Sbjct: 241 QFPLMMDRPPGPRSAAGQRLHSHQDACQSQGSHHSRGSGESE 282
>gi|239747453 PREDICTED: hypothetical protein XP_002347537 [Homo
sapiens]
Length = 282
Score = 604 bits (1557), Expect = e-173
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MVAQKTVKVPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDS 60
MVAQKTVKVPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDS
Sbjct: 1 MVAQKTVKVPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDS 60
Query: 61 SAQFLLLLPPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWL 120
SAQFLLLLPPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWL
Sbjct: 61 SAQFLLLLPPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWL 120
Query: 121 QGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV 180
QGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV
Sbjct: 121 QGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV 180
Query: 181 HSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRVQDPGGSTA 240
HSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRVQDPGGSTA
Sbjct: 181 HSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRVQDPGGSTA 240
Query: 241 QFPLMMDRPPGPRSAAGQRLHSHQDACQSQGSHHSRGSGESE 282
QFPLMMDRPPGPRSAAGQRLHSHQDACQSQGSHHSRGSGESE
Sbjct: 241 QFPLMMDRPPGPRSAAGQRLHSHQDACQSQGSHHSRGSGESE 282
>gi|239741327 PREDICTED: hypothetical protein XP_002342174 [Homo
sapiens]
Length = 282
Score = 604 bits (1557), Expect = e-173
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MVAQKTVKVPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDS 60
MVAQKTVKVPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDS
Sbjct: 1 MVAQKTVKVPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDS 60
Query: 61 SAQFLLLLPPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWL 120
SAQFLLLLPPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWL
Sbjct: 61 SAQFLLLLPPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWL 120
Query: 121 QGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV 180
QGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV
Sbjct: 121 QGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV 180
Query: 181 HSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRVQDPGGSTA 240
HSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRVQDPGGSTA
Sbjct: 181 HSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRVQDPGGSTA 240
Query: 241 QFPLMMDRPPGPRSAAGQRLHSHQDACQSQGSHHSRGSGESE 282
QFPLMMDRPPGPRSAAGQRLHSHQDACQSQGSHHSRGSGESE
Sbjct: 241 QFPLMMDRPPGPRSAAGQRLHSHQDACQSQGSHHSRGSGESE 282
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 37.4 bits (85), Expect = 0.015
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 82 RPQSAAGFPSHTRLSTAEEESGLCEG----------PAAPPCLGKLTWLQGEPTSQWPQR 131
RP+S AG TRL T EE +G P AP + + + P
Sbjct: 529 RPKSLAGSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERRKGERGEKQRKPGG 588
Query: 132 RSWQDWVMLGRGRCPQRS------GGTEEPPPPNSCR 162
SW+ + LGRG R GGT PP P+ R
Sbjct: 589 SSWKTFFALGRGPSVPRKKPLPWLGGTRAPPQPSGSR 625
Score = 35.4 bits (80), Expect = 0.057
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 95 LSTAEEESGLCEGPAAPPCLGKLTWLQGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEE 154
L+ AE + E + C G P SQ P RS + L G P + G+
Sbjct: 741 LALAERAQQVAEQQSQQECGGT------PPASQSPFHRS----LSLEVGGEPLGTSGSG- 789
Query: 155 PPPPNSCRHCSWRCWVPGPQERLQDVHSPASQL--QAPAGQGRGG 197
PPPNS H WVPGP L S S L Q P G R G
Sbjct: 790 -PPPNSLAHPG--AWVPGPPPYLPRQQSDGSLLRSQRPMGTSRRG 831
>gi|28912912 NK6 transcription factor related, locus 2 [Homo
sapiens]
Length = 277
Score = 35.4 bits (80), Expect = 0.057
Identities = 37/112 (33%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 50 ACQG-AGFLLDSSAQFLLLLPPGLARGLPHSQGRPQSAAG---FPSHTRLSTAEEESGLC 105
A QG AGF + LP G G+ GRP AAG RL+ +G+
Sbjct: 33 ALQGPAGFKAPALGGLGAQLPLGTPHGISDILGRPVGAAGGGLLGGLPRLNGLASSAGVY 92
Query: 106 EGPAAPPCLG---KLTWLQGEPTSQWP---QRRSWQDWVMLGRGRCPQRSGG 151
GPAA G L L G P WP Q W+D + G P +GG
Sbjct: 93 FGPAAAVARGYPKPLAELPGRPPIFWPGVVQGAPWRDPRLAG----PAPAGG 140
>gi|4557779 myocilin [Homo sapiens]
Length = 504
Score = 34.3 bits (77), Expect = 0.13
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 133 SWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDV-HSPASQL--QA 189
S Q+ L RG+CPQ + T PP S +W QE ++ PAS++ ++
Sbjct: 173 SSQEVARLRRGQCPQ-TRDTARAVPPGSREVSTWNLDTLAFQELKSELTEVPASRILKES 231
Query: 190 PAGQGRGGDIDEMCGAAV 207
P+G R G+ D CG V
Sbjct: 232 PSGYLRSGEGDTGCGELV 249
>gi|156104862 ankyrin repeat domain 38 [Homo sapiens]
Length = 995
Score = 33.5 bits (75), Expect = 0.22
Identities = 23/50 (46%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 76 LPHSQGRPQ--SAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWLQGE 123
L GRPQ A+ P+ S A EE GL GP APP L LQGE
Sbjct: 150 LTFGSGRPQLLRASSMPATLLHSRASEEPGLSLGPPAPPALPP---LQGE 196
>gi|84490388 R-spondin1 [Homo sapiens]
Length = 263
Score = 33.1 bits (74), Expect = 0.28
Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 29/153 (18%)
Query: 135 QDWVMLGRGRC----PQRSG---GTEEPPPPNSCRHCSWRCWVPGPQERLQDVHSPASQL 187
++ + L +GRC P+ S GT E P C W W P S+
Sbjct: 115 KEGLYLHKGRCYPACPEGSSAANGTMECSSPAQCEMSEWSPW------------GPCSKK 162
Query: 188 QAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRC------CVECRVQDPGGS--T 239
Q G RG +E + A + D ++ETRRC C E + + GG
Sbjct: 163 QQLCGFRRGS--EERTRRVLHAPVGDHAACSDTKETRRCTVRRVPCPEGQKRRKGGQGRR 220
Query: 240 AQFPLMMDRPPGPRSAAGQRLHSHQDACQSQGS 272
+ R + AG R Q Q QG+
Sbjct: 221 ENANRNLARKESKEAGAGSRRRKGQQQQQQQGT 253
>gi|153266907 gamma-glutamyltransferase 5 isoform c [Homo sapiens]
Length = 554
Score = 33.1 bits (74), Expect = 0.28
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 144 RCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDVHSPASQLQAPAGQGR--GGDIDE 201
RCP+ SG T P + RCW P P ER P+ + G GG E
Sbjct: 402 RCPRGSGTTPSPVSGDRVGGAPGRCWPPVPGERSPSSMVPSILINKAQGSKLVIGGAGGE 461
Query: 202 MCGAAVAAEMEDTLDVG 218
+ +AVA + L +G
Sbjct: 462 LIISAVAQAIMSKLWLG 478
>gi|153266885 gamma-glutamyltransferase 5 isoform b [Homo sapiens]
Length = 586
Score = 33.1 bits (74), Expect = 0.28
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 144 RCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDVHSPASQLQAPAGQGR--GGDIDE 201
RCP+ SG T P + RCW P P ER P+ + G GG E
Sbjct: 434 RCPRGSGTTPSPVSGDRVGGAPGRCWPPVPGERSPSSMVPSILINKAQGSKLVIGGAGGE 493
Query: 202 MCGAAVAAEMEDTLDVG 218
+ +AVA + L +G
Sbjct: 494 LIISAVAQAIMSKLWLG 510
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 32.7 bits (73), Expect = 0.37
Identities = 51/230 (22%), Positives = 69/230 (30%), Gaps = 21/230 (9%)
Query: 9 VPRTPFRRDPGETAPGHVRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDSSAQFLLLL 68
+P +P + P + P A F +AP A L Q
Sbjct: 776 LPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQ----A 831
Query: 69 PPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESG---------LCEGPAAPPCLGKLTW 119
PP LA L P ++ + R T ++ L GP PP +
Sbjct: 832 PPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSST 891
Query: 120 LQGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQD 179
L G + + + G P+ G PPP C W GP L
Sbjct: 892 LSGPDLAGHSSSATSTPEELRGYDSGPE-GGAAASPPPDAELAACHPAAWSRGPAPPLAF 950
Query: 180 VHSPASQLQAPAGQGRGGDIDEMC------GAAVAAEMEDTLDVGASEET 223
+P + L P G G D +C G A LD G S T
Sbjct: 951 RGAPGAPLPWPPATG-PGSADGLCTIYETEGPESATPAPGALDPGPSPGT 999
>gi|13569901 TSC22 domain family, member 4 [Homo sapiens]
Length = 395
Score = 32.7 bits (73), Expect = 0.37
Identities = 42/155 (27%), Positives = 59/155 (38%), Gaps = 14/155 (9%)
Query: 77 PHSQGRP----QSAAGFPSHTRLSTAEEESGLCEGPAAPPC---LGKLTWLQGEPTSQWP 129
PHS G + A+G L + E + L G PP G +WL+ PTS P
Sbjct: 102 PHSFGGLLEGIRGASGGAGGRSLDSRLELASLGLGAPTPPSGLSQGPTSWLRPPPTSPGP 161
Query: 130 QRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVP--GPQERLQDVHSPASQL 187
Q RS+ LG+ P ++ + PP S R P G +P L
Sbjct: 162 QARSFTGG--LGQLVVPSKA---KAEKPPLSASSPQQRPPEPETGESAGTSRAATPLPSL 216
Query: 188 QAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEE 222
+ A G G A +M +++GA EE
Sbjct: 217 RVEAEAGGSGARTPPLSRRKAVDMRLRMELGAPEE 251
>gi|169183882 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.3 bits (72), Expect = 0.48
Identities = 54/197 (27%), Positives = 69/197 (35%), Gaps = 54/197 (27%)
Query: 17 DPGETAPGH-VRKSGNRALCTSAKFSHRAPGCRRACQGAGFLLDSSAQFLLLLPP----- 70
D G GH V +G+ + HRAP C GAG PP
Sbjct: 45 DAGSECVGHRVPDAGSECV------GHRAPDAGSVCGGAG-------------PPMRGQW 85
Query: 71 GLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPPCLGKLTWLQGEPTSQ--- 127
G G P +G+ AG P G C A PP G++ W G P Q
Sbjct: 86 GWGAGSP-MRGQSVWGAGPPMR----------GQCVWRAGPPMRGQIVWSAGPPRVQGTL 134
Query: 128 --WPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPN--SC---RHCSWRCWVPGPQERLQDV 180
P R L + R P R G P P + +C H + PG QE +
Sbjct: 135 VHCPTRH-------LSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTG 187
Query: 181 HS-PASQLQAPAGQGRG 196
S P+ QL + +G G
Sbjct: 188 PSQPSMQLPSYPEEGSG 204
>gi|239754626 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 32.3 bits (72), Expect = 0.48
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 167 RCWVPGPQERLQDVHSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASE----- 221
R W PGP D+ S+ +A RG G V AE + D+G +
Sbjct: 9 RTWAPGPSNAALDLTLKGSKDKASGAGARG------AGREVVAEAKGRRDLGLARVCPRR 62
Query: 222 --ETRRCCVECRVQDPGGSTAQFPLMMDRPPGPRSAAGQR 259
RRC V R D G L + R PGP + ++
Sbjct: 63 PGAGRRCTVSPREADL-GPEKDTRLDLPRRPGPGPSGAEQ 101
>gi|122937472 bicaudal C homolog 1 [Homo sapiens]
Length = 974
Score = 32.0 bits (71), Expect = 0.63
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 148 RSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDVHSPASQLQAPAGQGRGGDIDE-MCGAA 206
++ G+E+ P +S P E D ++P+ G GD+ + MC +
Sbjct: 604 QTSGSEQTSPKSS------------PTEGCNDAFVEVGMPRSPSHSGNAGDLKQMMCPSK 651
Query: 207 VAAEMEDTLD-VGASEETRRCCVECRVQDPGGSTAQFPLMMDRPPGPRSAAGQRLHSHQD 265
V+ T++ + ++ + + + DP S + PL + PG AA + + Q+
Sbjct: 652 VSCAKRQTVELLQGTKNSHLHSTDRLLSDPELSATESPLADKKAPGSERAAERAAAAQQN 711
Query: 266 A 266
+
Sbjct: 712 S 712
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.0 bits (71), Expect = 0.63
Identities = 32/126 (25%), Positives = 40/126 (31%), Gaps = 8/126 (6%)
Query: 104 LCEGPAAPPCLGKLTWLQGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRH 163
L GP PP + L G + + + G P+ G PPP
Sbjct: 607 LAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPE-GGAAASPPPDAELAA 665
Query: 164 CSWRCWVPGPQERLQDVHSPASQLQAPAGQGRGGDIDEMC------GAAVAAEMEDTLDV 217
C W GP L +P + L P G G D +C G A LD
Sbjct: 666 CHPAAWSRGPAPPLAFRGAPGAPLPWPPATG-PGSADGLCTIYETEGPESATPAPGALDP 724
Query: 218 GASEET 223
G S T
Sbjct: 725 GPSPGT 730
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 32.0 bits (71), Expect = 0.63
Identities = 32/126 (25%), Positives = 40/126 (31%), Gaps = 8/126 (6%)
Query: 104 LCEGPAAPPCLGKLTWLQGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRH 163
L GP PP + L G + + + G P+ G PPP
Sbjct: 568 LAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPE-GGAAASPPPDAELAA 626
Query: 164 CSWRCWVPGPQERLQDVHSPASQLQAPAGQGRGGDIDEMC------GAAVAAEMEDTLDV 217
C W GP L +P + L P G G D +C G A LD
Sbjct: 627 CHPAAWSRGPAPPLAFRGAPGAPLPWPPATG-PGSADGLCTIYETEGPESATPAPGALDP 685
Query: 218 GASEET 223
G S T
Sbjct: 686 GPSPGT 691
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 31.6 bits (70), Expect = 0.82
Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 108 PAAPPCLGKLTWLQGEPTSQWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWR 167
P PP +G W + P P RR Q L P + T P P C
Sbjct: 252 PGGPP-VGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSS---- 306
Query: 168 CWVPGPQERLQDVHSPASQLQAP-AGQGR---GGDIDEMCGAAVAAEMEDTLDVGASEET 223
PGP + L + P + P AG GR GG E A + T +SE+T
Sbjct: 307 ---PGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQASSEKT 363
Query: 224 RR 225
++
Sbjct: 364 QQ 365
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 31.6 bits (70), Expect = 0.82
Identities = 48/153 (31%), Positives = 55/153 (35%), Gaps = 39/153 (25%)
Query: 123 EPTSQWPQRRSWQDWVMLGR----GRCPQRSGGTEEPP------PPNSCRHCSWRCWVPG 172
E Q R Q W GR G P R G PP PP R R W PG
Sbjct: 415 EAPEQGKPRLPPQAWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRREPCHRAW-PG 473
Query: 173 PQERLQDVHSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECR- 231
P + L ++ P Q AP G+ E E T G S+ETR ECR
Sbjct: 474 PAQPLGNLRPPVQQ-SAPGGR------------KCVKEGEAT---GPSKETRG-PKECRQ 516
Query: 232 ----VQDPGGSTAQFPLMMDRPPGPRSAAGQRL 260
V GG+ M PGP + QRL
Sbjct: 517 VGEAVLGEGGAP------MQSSPGPPNRCLQRL 543
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.6 bits (70), Expect = 0.82
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 127 QWPQRRSWQDWVMLGRGRCPQRSGGTEEPPPPNSCRHCSWRCWVPGPQERLQDVHSPASQ 186
QW + RS Q W GR R PQR G + P P R + + + R + S
Sbjct: 512 QWRRSRSAQRW---GRSRSPQRRGRSRSPQRPGWSRSRNTQ-----RRGRSRSARRGRSH 563
Query: 187 LQAPAGQGR 195
++PA +GR
Sbjct: 564 SRSPATRGR 572
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 31.2 bits (69), Expect = 1.1
Identities = 46/148 (31%), Positives = 53/148 (35%), Gaps = 29/148 (19%)
Query: 123 EPTSQWPQRRSWQDWVMLGR----GRCPQRSGGTEEPP------PPNSCRHCSWRCWVPG 172
E Q R Q W GR G P R G PP PP R R W PG
Sbjct: 743 EAPEQGKPRLPPQAWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRREPCHRAW-PG 801
Query: 173 PQERLQDVHSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRV 232
P + L ++ P Q AP G+ E E T G S+ETR ECR
Sbjct: 802 PAQPLGNLRPPVQQ-SAPGGR------------KCVKEGEAT---GPSKETRG-PKECR- 843
Query: 233 QDPGGSTAQFPLMMDRPPGPRSAAGQRL 260
Q + M PGP + QRL
Sbjct: 844 QVGEAVLGEGEAPMQSSPGPPNRCLQRL 871
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 31.2 bits (69), Expect = 1.1
Identities = 46/148 (31%), Positives = 53/148 (35%), Gaps = 29/148 (19%)
Query: 123 EPTSQWPQRRSWQDWVMLGR----GRCPQRSGGTEEPP------PPNSCRHCSWRCWVPG 172
E Q R Q W GR G P R G PP PP R R W PG
Sbjct: 743 EAPEQGKPRLPPQAWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRREPCHRAW-PG 801
Query: 173 PQERLQDVHSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRV 232
P + L ++ P Q AP G+ E E T G S+ETR ECR
Sbjct: 802 PAQPLGNLRPPVQQ-SAPGGR------------KCVKEGEAT---GPSKETRG-PKECR- 843
Query: 233 QDPGGSTAQFPLMMDRPPGPRSAAGQRL 260
Q + M PGP + QRL
Sbjct: 844 QVGEAVLGEGEAPMQSSPGPPNRCLQRL 871
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 31.2 bits (69), Expect = 1.1
Identities = 46/148 (31%), Positives = 53/148 (35%), Gaps = 29/148 (19%)
Query: 123 EPTSQWPQRRSWQDWVMLGR----GRCPQRSGGTEEPP------PPNSCRHCSWRCWVPG 172
E Q R Q W GR G P R G PP PP R R W PG
Sbjct: 743 EAPEQGKPRLPPQAWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRREPCHRAW-PG 801
Query: 173 PQERLQDVHSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGASEETRRCCVECRV 232
P + L ++ P Q AP G+ E E T G S+ETR ECR
Sbjct: 802 PAQPLGNLRPPVQQ-SAPGGR------------KCVKEGEAT---GPSKETRG-PKECR- 843
Query: 233 QDPGGSTAQFPLMMDRPPGPRSAAGQRL 260
Q + M PGP + QRL
Sbjct: 844 QVGEAVLGEGEAPMQSSPGPPNRCLQRL 871
>gi|40806216 visual system homeobox 1 isoform b [Homo sapiens]
Length = 239
Score = 31.2 bits (69), Expect = 1.1
Identities = 43/176 (24%), Positives = 57/176 (32%), Gaps = 30/176 (17%)
Query: 53 GAGFLLDSSAQFLLLLPPGLARGLPHSQGRPQSAA-----GFPSHTRLSTAEEESGLCEG 107
G L D L+P G RG RP+ A G + + CEG
Sbjct: 3 GRDSLSDGRTSSRALVPGGSPRG-----SRPRGFAITDLLGLEAELPAPAGPGQGSGCEG 57
Query: 108 PAAPPCLGKLTWLQGEPTSQWPQRRSWQDWVMLGRGRCPQRSG---GTEEPPPPNSCRHC 164
PA PC G D L RG P G G PP + C
Sbjct: 58 PAVAPCPG-----------------PGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPC 100
Query: 165 SWRCWVPGPQERLQDVHSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGAS 220
VP R + +P + + P GR D + + ++ ED D+ AS
Sbjct: 101 LLLADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKAS 156
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 31.2 bits (69), Expect = 1.1
Identities = 43/176 (24%), Positives = 57/176 (32%), Gaps = 30/176 (17%)
Query: 53 GAGFLLDSSAQFLLLLPPGLARGLPHSQGRPQSAA-----GFPSHTRLSTAEEESGLCEG 107
G L D L+P G RG RP+ A G + + CEG
Sbjct: 3 GRDSLSDGRTSSRALVPGGSPRG-----SRPRGFAITDLLGLEAELPAPAGPGQGSGCEG 57
Query: 108 PAAPPCLGKLTWLQGEPTSQWPQRRSWQDWVMLGRGRCPQRSG---GTEEPPPPNSCRHC 164
PA PC G D L RG P G G PP + C
Sbjct: 58 PAVAPCPG-----------------PGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPC 100
Query: 165 SWRCWVPGPQERLQDVHSPASQLQAPAGQGRGGDIDEMCGAAVAAEMEDTLDVGAS 220
VP R + +P + + P GR D + + ++ ED D+ AS
Sbjct: 101 LLLADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKAS 156
>gi|239757934 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 175 ERLQDVHSPASQLQAPAGQGRG-----GDIDEMC 203
E LQD H+PA+ P G G G GD++ +C
Sbjct: 18 EELQDQHAPAAARGGPCGMGPGCSSTSGDLEALC 51
>gi|239756477 PREDICTED: similar to predicted protein [Homo sapiens]
Length = 291
Score = 30.4 bits (67), Expect = 1.8
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 69 PPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPP 112
PPG G + R + FPSHTR + + +GP +PP
Sbjct: 245 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNG---DGPRSPP 285
>gi|239752441 PREDICTED: hypothetical protein XP_002348273 [Homo
sapiens]
Length = 77
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 175 ERLQDVHSPASQLQAPAGQGRG-----GDIDEMC 203
E LQD H+PA+ P G G G GD++ +C
Sbjct: 18 EELQDQHAPAAARGGPCGMGPGCSSTSGDLEALC 51
>gi|239751001 PREDICTED: similar to predicted protein [Homo sapiens]
Length = 291
Score = 30.4 bits (67), Expect = 1.8
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 69 PPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPP 112
PPG G + R + FPSHTR + + +GP +PP
Sbjct: 245 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNG---DGPRSPP 285
>gi|239745404 PREDICTED: hypothetical protein XP_002343488 [Homo
sapiens]
Length = 183
Score = 30.4 bits (67), Expect = 1.8
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 69 PPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPP 112
PPG G + R + FPSHTR + + +GP +PP
Sbjct: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNG---DGPRSPP 177
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,971,158
Number of Sequences: 37866
Number of extensions: 968683
Number of successful extensions: 2951
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2880
Number of HSP's gapped (non-prelim): 147
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.