Search of human proteins with 239741243

Search of human proteins with 239741243

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo
sapiens]
         (173 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens]          340   3e-94
gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo ...   340   3e-94
gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo ...   340   3e-94
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]             37   0.007
gi|239751284 PREDICTED: hypothetical protein XP_002347797 [Homo ...    37   0.009
gi|93352554 GPR158-like 1 [Homo sapiens]                               37   0.009
gi|194097341 period 1 [Homo sapiens]                                   36   0.015
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]             36   0.019
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]             36   0.019
gi|24497506 forkhead box A3 [Homo sapiens]                             36   0.019
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  35   0.025
gi|239755587 PREDICTED: hypothetical protein [Homo sapiens]            35   0.025
gi|239744407 PREDICTED: hypothetical protein XP_002343137 [Homo ...    35   0.025
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]             35   0.025
gi|222080092 WD repeat domain 91 [Homo sapiens]                        33   0.094
gi|4502805 chromogranin A precursor [Homo sapiens]                     33   0.094
gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens]             33   0.094
gi|21536404 bridging integrator 1 isoform 3 [Homo sapiens]             33   0.094
gi|134244585 putative neuronal cell adhesion molecule [Homo sapi...    33   0.094
gi|78042577 MAP7 domain containing 1 [Homo sapiens]                    33   0.094
gi|238908524 hypothetical protein LOC389333 [Homo sapiens]             33   0.16 
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]            33   0.16 
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]            33   0.16 
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]             33   0.16 
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora...    33   0.16 
gi|150418009 transforming, acidic coiled-coil containing protein...    33   0.16 
gi|4758010 clock [Homo sapiens]                                        32   0.21 
gi|221139764 PHD and ring finger domains 1 [Homo sapiens]              32   0.21 
gi|29826323 adducin 1 (alpha) isoform c [Homo sapiens]                 32   0.27 
gi|29826319 adducin 1 (alpha) isoform a [Homo sapiens]                 32   0.27 

>gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens]
          Length = 173

 Score =  340 bits (873), Expect = 3e-94
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MGIPVVAEQLGYELGVIAIRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDP 60
           MGIPVVAEQLGYELGVIAIRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDP
Sbjct: 1   MGIPVVAEQLGYELGVIAIRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDP 60

Query: 61  EASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWT 120
           EASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWT
Sbjct: 61  EASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWT 120

Query: 121 RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALPIKILFIS 173
           RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALPIKILFIS
Sbjct: 121 RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALPIKILFIS 173


>gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo
           sapiens]
          Length = 173

 Score =  340 bits (873), Expect = 3e-94
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MGIPVVAEQLGYELGVIAIRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDP 60
           MGIPVVAEQLGYELGVIAIRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDP
Sbjct: 1   MGIPVVAEQLGYELGVIAIRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDP 60

Query: 61  EASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWT 120
           EASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWT
Sbjct: 61  EASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWT 120

Query: 121 RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALPIKILFIS 173
           RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALPIKILFIS
Sbjct: 121 RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALPIKILFIS 173


>gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo
           sapiens]
          Length = 173

 Score =  340 bits (873), Expect = 3e-94
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MGIPVVAEQLGYELGVIAIRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDP 60
           MGIPVVAEQLGYELGVIAIRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDP
Sbjct: 1   MGIPVVAEQLGYELGVIAIRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDP 60

Query: 61  EASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWT 120
           EASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWT
Sbjct: 61  EASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWT 120

Query: 121 RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALPIKILFIS 173
           RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALPIKILFIS
Sbjct: 121 RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALPIKILFIS 173


>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
          Length = 360

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 46/166 (27%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 7   AEQLGYELGVIA----IRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDPEA 62
           AE+   E+G  +    +R    +G   L +  G GR         GT  V  K S    A
Sbjct: 32  AERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARD------GTWGVRTKGSG---A 82

Query: 63  SLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWTRS 122
           +L   P       PEA  P   L     G SG   G    +M H     V SR R  +RS
Sbjct: 83  ALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH-----VGSRKRSRSRS 137

Query: 123 GWRLKESGEEEEDKSSEAAQRCRA---QEPGASSAAALLASSVPAL 165
             R + S + ++    + ++ C A   Q   AS+A    AS  P +
Sbjct: 138 RSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCI 183



 Score = 27.7 bits (60), Expect = 5.2
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 55  KSSSDPEASLTPPPVPTLQVAPEA-----PCPQSHLSFTSEGSSGTSRGATGKSMGHSSQ 109
           K+S+ P A  +P P  T +   +A         S  S +S  SS +S  ++  S G   +
Sbjct: 168 KASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 227

Query: 110 RPVSSRARCWTRSGWRLKESGEEEED 135
                + R   +   +LK+ G+E+ +
Sbjct: 228 GKYKDKRRKKKKKRKKLKKKGKEKAE 253


>gi|239751284 PREDICTED: hypothetical protein XP_002347797 [Homo
           sapiens]
          Length = 1674

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 63  SLTPPPVPTLQVAPEAP---------CPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVS 113
           +L P P P L   P +P         CP  +    ++  +    G +G   GH S  P  
Sbjct: 274 ALAPTPAPALAPVPVSPQSPNLLTYICPWENAELPAKQENVPQEGPSGPERGHHS--PAP 331

Query: 114 SRARCWTRSGWRLKES--GEEEEDKSSEAAQR 143
           +RAR W      +++S  GE E D      QR
Sbjct: 332 ARARLWRALSVAVEKSRAGENEMDAEDAHHQR 363


>gi|93352554 GPR158-like 1 [Homo sapiens]
          Length = 2367

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 63   SLTPPPVPTLQVAPEAP---------CPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVS 113
            +L P P P L   P +P         CP  +    ++  +    G +G   GH S  P  
Sbjct: 967  ALAPTPAPALAPVPVSPQSPNLLTYICPWENAELPAKQENVPQEGPSGPERGHHS--PAP 1024

Query: 114  SRARCWTRSGWRLKES--GEEEEDKSSEAAQR 143
            +RAR W      +++S  GE E D      QR
Sbjct: 1025 ARARLWRALSVAVEKSRAGENEMDAEDAHHQR 1056


>gi|194097341 period 1 [Homo sapiens]
          Length = 1290

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 60  PEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCW 119
           P  S  P  VP+       PCP   L+  ++ +S  S G   +S GH S R  S R+   
Sbjct: 16  PGESFCPGGVPSPGPPQHRPCPGPSLADDTDANSNGSSG--NESNGHES-RGASQRSSHS 72

Query: 120 TRSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASS 161
           + SG   K+S   E  +SS++        P +S A +LL++S
Sbjct: 73  SSSG-NGKDSALLETTESSKSTNSQSPSPPSSSIAYSLLSAS 113


>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
          Length = 338

 Score = 35.8 bits (81), Expect = 0.019
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 21/167 (12%)

Query: 7   AEQLGYELGVIA----IRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDPEA 62
           AE+   E+G  +    +R    +G   L +  G GR         GT  V  K S    A
Sbjct: 32  AERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARD------GTWGVRTKGSG---A 82

Query: 63  SLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVS-SRARCWTR 121
           +L   P       PEA  P   L     G SG   G    +M H   R  S SR+R   R
Sbjct: 83  ALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGR 142

Query: 122 SGWRLKESGEEEEDKSSEAA-------QRCRAQEPGASSAAALLASS 161
              + K+   ++  ++  A+       Q+ R +   +SS+++  +SS
Sbjct: 143 GSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189


>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
          Length = 341

 Score = 35.8 bits (81), Expect = 0.019
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 21/167 (12%)

Query: 7   AEQLGYELGVIA----IRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDPEA 62
           AE+   E+G  +    +R    +G   L +  G GR         GT  V  K S    A
Sbjct: 32  AERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARD------GTWGVRTKGSG---A 82

Query: 63  SLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVS-SRARCWTR 121
           +L   P       PEA  P   L     G SG   G    +M H   R  S SR+R   R
Sbjct: 83  ALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGR 142

Query: 122 SGWRLKESGEEEEDKSSEAA-------QRCRAQEPGASSAAALLASS 161
              + K+   ++  ++  A+       Q+ R +   +SS+++  +SS
Sbjct: 143 GSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189


>gi|24497506 forkhead box A3 [Homo sapiens]
          Length = 350

 Score = 35.8 bits (81), Expect = 0.019
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 41  PVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSF----TSEGSSGTS 96
           P + P      +N  SS  P   L   P+P+  +AP AP      +F     S GSS + 
Sbjct: 32  PTMAPLNSYMTLNPLSSPYPPGGLPASPLPSGPLAPPAPAAPLGPTFPGLGVSGGSSSSG 91

Query: 97  RGATGKSMGHSSQRPVSSR 115
            GA G  + H  + P   R
Sbjct: 92  YGAPGPGLVHGKEMPKGYR 110


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 35.4 bits (80), Expect = 0.025
 Identities = 44/166 (26%), Positives = 62/166 (37%), Gaps = 47/166 (28%)

Query: 17   IAIRALLVQGVVAL-GSRRGVGRKTPVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQVA 75
            ++ + +L Q V  L GS     +K P+  PG G+  V     + P  S  PPP PT    
Sbjct: 1226 VSPKPVLTQPVPKLQGSPTPTSKKVPL--PGPGSPEVKRAHGTPPPVSPKPPPPPT---- 1279

Query: 76   PEAPCPQSHLSFTSEGSSGTSRG---------------ATGKSMGHSSQRPVSSRARCWT 120
              AP P   ++    GS+G S                  T  S+G S  +P S  A    
Sbjct: 1280 --APKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGA---- 1333

Query: 121  RSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALP 166
                                A    A+ P A++AAA  A++ PA P
Sbjct: 1334 -------------------PALHVPAKPPRAAAAAAAAAAAPPAPP 1360


>gi|239755587 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 211

 Score = 35.4 bits (80), Expect = 0.025
 Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 41  PVVQP-GRGTRNV--NLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSR 97
           P   P GR +RN    L S S P + L+P  +P  Q AP  P P         G   T R
Sbjct: 51  PAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLP------VDSGPETTLR 104

Query: 98  GATGK--SMGHSSQRPVSSRARCWTRSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAA 155
           G+      M    +RP  +     T  G R   +G    + +     RC +    ASS  
Sbjct: 105 GSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSM--AASSPL 162

Query: 156 ALL 158
           ++L
Sbjct: 163 SIL 165


>gi|239744407 PREDICTED: hypothetical protein XP_002343137 [Homo
           sapiens]
          Length = 211

 Score = 35.4 bits (80), Expect = 0.025
 Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 41  PVVQP-GRGTRNV--NLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSR 97
           P   P GR +RN    L S S P + L+P  +P  Q AP  P P         G   T R
Sbjct: 51  PAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLP------VDSGPETTLR 104

Query: 98  GATGK--SMGHSSQRPVSSRARCWTRSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAA 155
           G+      M    +RP  +     T  G R   +G    + +     RC +    ASS  
Sbjct: 105 GSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSM--AASSPL 162

Query: 156 ALL 158
           ++L
Sbjct: 163 SIL 165


>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
          Length = 352

 Score = 35.4 bits (80), Expect = 0.025
 Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 23/161 (14%)

Query: 7   AEQLGYELGVIA----IRALLVQGVVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDPEA 62
           AE+   E+G  +    +R    +G   L +  G GR         GT  V  K S    A
Sbjct: 32  AERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARD------GTWGVRTKGSG---A 82

Query: 63  SLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWTRS 122
           +L   P       PEA  P   L     G SG   G    +M H     V SR R  +RS
Sbjct: 83  ALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH-----VGSRKRSRSRS 137

Query: 123 GWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVP 163
             R + S + ++    + ++ C      AS++    AS+ P
Sbjct: 138 RSRGRGSEKRKKKSRKDTSRNC-----SASTSQGRKASTAP 173


>gi|222080092 WD repeat domain 91 [Homo sapiens]
          Length = 747

 Score = 33.5 bits (75), Expect = 0.094
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 52  VNLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSG---TSRGATGKSMGHSS 108
           V   SS  P++  +P  +   Q  P+        SF  +G+ G   TS    GKS+    
Sbjct: 259 VGFLSSLLPQSKKSPSRLSPAQGPPQPQSSAKKESFGGQGTKGKDPTSGAKDGKSL---- 314

Query: 109 QRPVSSRARCWTRSGW------RLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSV 162
              +S  A     SGW      RL++ G+E ++  S    +C  ++P AS   A     +
Sbjct: 315 ---LSGLAT--GESGWSQHRQRRLQDHGKERKELFSTTTSQCAEKKPEASGPEAEPCPEL 369

Query: 163 PALPIKIL 170
              P++ L
Sbjct: 370 HTEPVEPL 377


>gi|4502805 chromogranin A precursor [Homo sapiens]
          Length = 457

 Score = 33.5 bits (75), Expect = 0.094
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 21/97 (21%)

Query: 55  KSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSS-GTSRGATGKSMGHSSQRPVS 113
           +   + EA+ T PP      + + P PQ+      EG S G S+G   +  G S++    
Sbjct: 173 EEEEEEEATNTHPPASL--PSQKYPGPQA------EGDSEGLSQGLVDREKGLSAE---- 220

Query: 114 SRARCWTRSGWRLKESGEEEEDKSSEAAQRCRAQEPG 150
                    GW+ K   EEEE++ +EA +    +E G
Sbjct: 221 --------PGWQAKREEEEEEEEEAEAGEEAVPEEEG 249


>gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens]
          Length = 475

 Score = 33.5 bits (75), Expect = 0.094
 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 27/156 (17%)

Query: 27  VVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLS 86
           +V L  + G    T   QP         KS S P+ S              A  P+  ++
Sbjct: 236 LVGLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPDGS-------------PAATPEIRVN 282

Query: 87  FTSEGSSGTSRGAT-GKSMGHSSQRPVSS-------RARCWTRSGW--RLKESGEEEEDK 136
              E + G + GAT  KS    ++ P  S        A       W  +  E G  +  +
Sbjct: 283 HEPEPAGGATPGATLPKSPSQPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAE 342

Query: 137 SSEAAQRCR----AQEPGASSAAALLASSVPALPIK 168
           +SE A   +    AQEPG ++A+   +SS+PA+ ++
Sbjct: 343 ASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVE 378


>gi|21536404 bridging integrator 1 isoform 3 [Homo sapiens]
          Length = 506

 Score = 33.5 bits (75), Expect = 0.094
 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 27/156 (17%)

Query: 27  VVALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLS 86
           +V L  + G    T   QP         KS S P+ S              A  P+  ++
Sbjct: 267 LVGLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPDGS-------------PAATPEIRVN 313

Query: 87  FTSEGSSGTSRGAT-GKSMGHSSQRPVSS-------RARCWTRSGW--RLKESGEEEEDK 136
              E + G + GAT  KS    ++ P  S        A       W  +  E G  +  +
Sbjct: 314 HEPEPAGGATPGATLPKSPSQPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAE 373

Query: 137 SSEAAQRCR----AQEPGASSAAALLASSVPALPIK 168
           +SE A   +    AQEPG ++A+   +SS+PA+ ++
Sbjct: 374 ASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVE 409


>gi|134244585 putative neuronal cell adhesion molecule [Homo
           sapiens]
          Length = 814

 Score = 33.5 bits (75), Expect = 0.094
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 26  GVVAL-GSRRGVGRKTPVVQPGRGTRNVNLKSSSD--PEASLT--PPPVPTLQVAPEAPC 80
           G++AL G+RRG        Q GR  + V++K      P AS    P P PT   A  APC
Sbjct: 690 GILALNGARRGQRG-----QLGRDEKRVDMKELEQLFPPASAAGQPDPRPTQDPAAPAPC 744

Query: 81  PQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRA 116
            ++ LS       G   G T ++    +  P +  A
Sbjct: 745 EETQLSVLPLQGCGLMEGKTTEAKTTEATAPCAGLA 780


>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
          Length = 841

 Score = 33.5 bits (75), Expect = 0.094
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 29  ALGSRRGVGRKTPVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFT 88
           AL   R + ++  +    R   + +  S   P++   P    T    P +PCP      T
Sbjct: 430 ALARERSLKKRQSLPASPRARLSASTASELSPKSKARPSSPSTSWHRPASPCPSPGPGHT 489

Query: 89  SEGSSGTSRGATGKSMGHSSQRPVSSRARCWTRSGWRLKESGEEEEDKSSEAAQRCRAQE 148
                 + RG T    G   ++  +  +            +G E++ +S   A   +   
Sbjct: 490 LPPKPPSPRGTTASPKGRVRRKEEAKESP---------SAAGPEDKSQSKRRASNEKESA 540

Query: 149 PGASSAAALLASSVPALPIK 168
             AS A +   S  PA P K
Sbjct: 541 APASPAPSPAPSPTPAPPQK 560



 Score = 27.7 bits (60), Expect = 5.2
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 54  LKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRP 111
           +K+++  +     P  P+ QV P    PQ      S  S   SRG T  +MG    RP
Sbjct: 55  MKNATSSKQLPLEPESPSGQVGPRPAPPQEE----SPSSEAKSRGPTPPAMGPRDARP 108


>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
          Length = 1015

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 30  LGSRRGVGRKTPVVQPG-RGTRNVNLKSSSDPEASL-----TPPPVPTLQVAPEAPCPQS 83
           LG  R   +++PV   G R  R  + +  + P   +     TPP  P    A +AP P+ 
Sbjct: 779 LGGARSSSQRSPVGPAGVRSPRPGSPQMQASPSPGIAPKPKTPPTAPEPAAAVQAPLPRE 838

Query: 84  HLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRAR 117
            L+     +    R A+      S Q P     R
Sbjct: 839 PLALAGRTAPAQPRAASAPPTDRSPQSPSQGARR 872


>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 36  VGRKTPVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGT 95
           +GR +P      G+ +           +L  PP PT   A  AP            +   
Sbjct: 293 LGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAP---------GAPNPAE 343

Query: 96  SRGATGKSMGHSSQRPVSSR----ARCWTRSGWRLKESGEEEEDKSSEAAQRCR 145
           SR   G + G  S+R    R    AR   R G  L  SGEE   +    +Q C+
Sbjct: 344 SRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEETPGRRKSPSQSCK 397


>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 36  VGRKTPVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGT 95
           +GR +P      G+ +           +L  PP PT   A  AP            +   
Sbjct: 293 LGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAP---------GAPNPAE 343

Query: 96  SRGATGKSMGHSSQRPVSSR----ARCWTRSGWRLKESGEEEEDKSSEAAQRCR 145
           SR   G + G  S+R    R    AR   R G  L  SGEE   +    +Q C+
Sbjct: 344 SRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEETPGRRKSPSQSCK 397


>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 36  VGRKTPVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGT 95
           +GR +P      G+ +           +L  PP PT   A  AP            +   
Sbjct: 293 LGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAP---------GAPNPAE 343

Query: 96  SRGATGKSMGHSSQRPVSSR----ARCWTRSGWRLKESGEEEEDKSSEAAQRCR 145
           SR   G + G  S+R    R    AR   R G  L  SGEE   +    +Q C+
Sbjct: 344 SRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEETPGRRKSPSQSCK 397


>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 6 [Homo sapiens]
          Length = 1093

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 55  KSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATG-KSMGHS 107
           K    P + LTPP VPT      +    SH   +++ +S +SR + G KS  HS
Sbjct: 254 KRPESPPSILTPPVVPTADKVSSSASSSSHHEASTQETSESSRESKGKKSSSHS 307


>gi|150418009 transforming, acidic coiled-coil containing protein 2
            isoform a [Homo sapiens]
          Length = 2948

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 15/111 (13%)

Query: 61   EASLTPPPVPTLQV----APEAPCPQSHLSFTSEGSSGTSRGA--TGKSMG-------HS 107
            E    P P P  ++      +A  P+   SF S G  G   GA  TG S G        +
Sbjct: 1087 EGRQQPVPAPQQKMECWATSDAESPKLLASFPSAGEQGGEAGAAETGGSAGAGDPGKQQA 1146

Query: 108  SQRPVSSRARCWTRSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALL 158
             ++P  +   C          SGEE    +S   + C+A+ P AS   ALL
Sbjct: 1147 PEKPGEATLSCGLLQTEHCLTSGEEAS--TSALRESCQAEHPMASCQDALL 1195



 Score = 28.5 bits (62), Expect = 3.0
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 23  LVQGVVALGSR----RGVGRKTPVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQV---- 74
           L + V  LGS+     G   + P   P     ++N + S + +  + PPP+P  Q     
Sbjct: 468 LERQVSDLGSKGEHPEGDPGEVPAPSPQERGEHLNTEQSHEVQPGVPPPPLPKEQSHEVQ 527

Query: 75  --APEAPCPQSHLSFTSEGSSGTSRGA 99
             AP  P P++  S ++ G  G + GA
Sbjct: 528 PGAPPPPLPKAP-SESARGPPGPTDGA 553


>gi|4758010 clock [Homo sapiens]
          Length = 846

 Score = 32.3 bits (72), Expect = 0.21
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 47  RGTRNVNLKSSSDPEASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGH 106
           R +R  +  + SDP  S TP  +PT    P      +H       SS +S+    +S+G 
Sbjct: 435 RSSRKSSHTAVSDP--SSTPTKIPTDTSTPPRQHLPAHEKMVQRRSSFSSQSINSQSVGS 492

Query: 107 SSQRPVSSRA 116
           S  +PV S+A
Sbjct: 493 SLTQPVMSQA 502


>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
          Length = 1648

 Score = 32.3 bits (72), Expect = 0.21
 Identities = 36/101 (35%), Positives = 43/101 (42%), Gaps = 25/101 (24%)

Query: 30  LGSRRGVGRKTPVVQPGRGTRNVNLKSSSDPEASLTPPPVPTLQV-APEAPCPQSHLSFT 88
           L  R G G      QPGRGTR       ++ EAS   P  P +   +   P P SH S  
Sbjct: 713 LTGREGTG------QPGRGTR-------AESEASSRVPREPGVHTGSSRPPAPSSHGSLA 759

Query: 89  SEG-SSGTSRGATGKS--------MGHSSQRPVSSRARCWT 120
             G S G   G+T +S        M HSSQ  +SS   C T
Sbjct: 760 PLGPSRGKGVGSTFESFRINIPGNMAHSSQ--LSSPGFCNT 798


>gi|29826323 adducin 1 (alpha) isoform c [Homo sapiens]
          Length = 631

 Score = 32.0 bits (71), Expect = 0.27
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 77  EAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWTRSGWRLKESGEEEEDK 136
           E P   +  SF S+G SGT        + HS Q+    + R W  SG R  E+ EE ++ 
Sbjct: 411 EVPASVTGYSFASDGDSGTC-----SPLRHSFQKQQREKTR-WLNSG-RGDEASEEGQNG 463

Query: 137 SSEAAQRCRAQEPGASSAAALLASSVPAL 165
           SS  ++    +E G  ++     S+VP L
Sbjct: 464 SSPKSKTKWTKEDGHRTS----TSAVPNL 488


>gi|29826319 adducin 1 (alpha) isoform a [Homo sapiens]
          Length = 737

 Score = 32.0 bits (71), Expect = 0.27
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 77  EAPCPQSHLSFTSEGSSGTSRGATGKSMGHSSQRPVSSRARCWTRSGWRLKESGEEEEDK 136
           E P   +  SF S+G SGT        + HS Q+    + R W  SG R  E+ EE ++ 
Sbjct: 411 EVPASVTGYSFASDGDSGTC-----SPLRHSFQKQQREKTR-WLNSG-RGDEASEEGQNG 463

Query: 137 SSEAAQRCRAQEPGASSAAALLASSVPAL 165
           SS  ++    +E G  ++     S+VP L
Sbjct: 464 SSPKSKTKWTKEDGHRTS----TSAVPNL 488


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.127    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,456,100
Number of Sequences: 37866
Number of extensions: 379312
Number of successful extensions: 2792
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 209
Number of HSP's that attempted gapping in prelim test: 2589
Number of HSP's gapped (non-prelim): 397
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.