Guide to the Human Genome
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Name: LOC100288957 Sequence: fasta or formatted (170aa) NCBI GI: 239741189
Description:

PREDICTED: hypothetical protein XP_002342132

Not currently referenced in the text

Other entries for this name:
alt mRNA {170aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         11           1
 C cysteine            1.8          3           1
 D aspartate           2.4          4           1
 E glutamate           2.4          4           1
 F phenylalanine       5.3          9           2
 G glycine             4.7          8           1
 H histidine           2.9          5           1
 I isoleucine          0.6          1           1
 K lysine              1.8          3           2
 L leucine             8.8         15           3
 M methionine          1.8          3           1
 N asparagine          3.5          6           2
 P proline            10.6         18           3
 Q glutamine           5.3          9           1
 R arginine           14.1         24           2
 S serine             14.1         24           1
 T threonine           7.1         12           2
 V valine              4.1          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342132 
LOC100292645          1.000   PREDICTED: hypothetical protein 
LOC100288957          1.000   PREDICTED: hypothetical protein 
LOC100292075          0.025   PREDICTED: hypothetical protein XP_002344878 
LOC100290996          0.025   PREDICTED: hypothetical protein XP_002347569 
LOC100289090          0.025   PREDICTED: hypothetical protein XP_002343380 
TRPM3                 0.022   transient receptor potential cation channel, subfam...
TRPM3                 0.022   transient receptor potential cation channel, subfam...
TRPM3                 0.022   transient receptor potential cation channel, subfam...
TRPM3                 0.022   transient receptor potential cation channel, subfam...
TRPM3                 0.022   transient receptor potential cation channel, subfam...
TRPM3                 0.022   transient receptor potential cation channel, subfam...
TRPM3                 0.022   transient receptor potential cation channel, subfam...
MKL2                  0.022   megakaryoblastic leukemia 2 protein 
MLL                   0.019   myeloid/lymphoid or mixed-lineage leukemia protein [...
LOC100133756          0.019   PREDICTED: hypothetical protein, partial 
LOC100134060          0.019   PREDICTED: hypothetical protein 
PCNXL2                0.016   pecanex-like 2 
RASIP1                0.016   Ras-interacting protein 1 
SRRM1                 0.016   serine/arginine repetitive matrix 1 
MMAB                  0.016   cob(I)alamin adenosyltransferase precursor 
TANC2                 0.012   tetratricopeptide repeat, ankyrin repeat and coiled...
STK11IP               0.012   LKB1 interacting protein 
ADAM15                0.012   a disintegrin and metalloproteinase domain 15 isofor...
CBFA2T3               0.012   myeloid translocation gene on chromosome 16 isoform ...
DOCK6                 0.012   dedicator of cytokinesis 6 
MARK2                 0.009   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK2                 0.009   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK2                 0.009   MAP/microtubule affinity-regulating kinase 2 isoform...
ZNF469                0.009   zinc finger protein 469 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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