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Search of human proteins with 239740999
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
(249 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens] 530 e-151
gi|239752655 PREDICTED: hypothetical protein [Homo sapiens] 528 e-150
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens] 528 e-150
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 105 4e-23
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 105 4e-23
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 105 4e-23
gi|153252110 ring finger protein 183 [Homo sapiens] 76 3e-14
gi|27436877 tripartite motif-containing 59 [Homo sapiens] 53 3e-07
gi|30794216 tripartite motif-containing 56 [Homo sapiens] 49 3e-06
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 49 4e-06
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 49 4e-06
gi|27734873 ring finger protein 152 [Homo sapiens] 49 4e-06
gi|40255283 NHL repeat containing 1 [Homo sapiens] 49 5e-06
gi|119220603 ring finger protein 208 [Homo sapiens] 49 5e-06
gi|22749455 ring finger protein 182 [Homo sapiens] 48 7e-06
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 47 1e-05
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 47 1e-05
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 47 2e-05
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 47 2e-05
gi|226442736 ring finger protein 222 [Homo sapiens] 46 3e-05
gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens] 46 3e-05
gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens] 46 3e-05
gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens] 46 3e-05
gi|9506663 ring finger protein 186 [Homo sapiens] 46 3e-05
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 45 8e-05
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 45 8e-05
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 45 8e-05
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 45 8e-05
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 45 8e-05
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 44 1e-04
>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 530 bits (1365), Expect = e-151
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60
MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN
Sbjct: 1 MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60
Query: 61 IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120
IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ
Sbjct: 61 IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120
Query: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPAPARDPAPR 180
LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPAPARDPAPR
Sbjct: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPAPARDPAPR 180
Query: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240
RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA
Sbjct: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240
Query: 241 SPLGPLTDN 249
SPLGPLTDN
Sbjct: 241 SPLGPLTDN 249
>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 528 bits (1361), Expect = e-150
Identities = 248/249 (99%), Positives = 248/249 (99%)
Query: 1 MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60
MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN
Sbjct: 1 MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60
Query: 61 IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120
IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ
Sbjct: 61 IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120
Query: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPAPARDPAPR 180
LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPP PARDPAPR
Sbjct: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180
Query: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240
RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA
Sbjct: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240
Query: 241 SPLGPLTDN 249
SPLGPLTDN
Sbjct: 241 SPLGPLTDN 249
>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 528 bits (1361), Expect = e-150
Identities = 248/249 (99%), Positives = 248/249 (99%)
Query: 1 MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60
MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN
Sbjct: 1 MSSGQQVWHTAVPPPRRSSSIASMPRSPSSAGSPRSPGTPGSERVASPLECSICFSGYDN 60
Query: 61 IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120
IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ
Sbjct: 61 IFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQ 120
Query: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPAPARDPAPR 180
LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPP PARDPAPR
Sbjct: 121 LQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPVPARDPAPR 180
Query: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240
RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA
Sbjct: 181 RGRLARCWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTAA 240
Query: 241 SPLGPLTDN 249
SPLGPLTDN
Sbjct: 241 SPLGPLTDN 249
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 105 bits (262), Expect = 4e-23
Identities = 86/243 (35%), Positives = 105/243 (43%), Gaps = 40/243 (16%)
Query: 23 SMPRSPSSAGSPRSP---------------GTPGSERV---ASPLECSICFSGYDNIFKT 64
S P SP S +PRSP G+PGS + ASP+EC IC S +D +FK
Sbjct: 18 SGPSSPGSLSAPRSPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFKL 77
Query: 65 PKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP-AGAPALCTSRQL-- 121
PK L C HVFCLECLARL+ A GG AV CP CR PT + P G PAL T L
Sbjct: 78 PKRLDCGHVFCLECLARLSLAT---AGGGNAVACPVCRAPTRLAPRRGLPALPTQSGLLP 134
Query: 122 -QARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPAPARDPAPR 180
AR P + L +P P PG + P PP P R
Sbjct: 135 RDARAPPSRQGSVRFDRRRGLLYLRPPPPPPGPRK-------ARAPPPPPPLRLGRPLSR 187
Query: 181 RGRLAR-CWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTA 239
R LA W LV+A L++ + + A +G PPRP + A
Sbjct: 188 RLSLASPAWVFNAAVALAVLVAAGLVVSGVYIFFLIPHATSSG-------PPRPQLVALA 240
Query: 240 ASP 242
+P
Sbjct: 241 PAP 243
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 105 bits (262), Expect = 4e-23
Identities = 86/243 (35%), Positives = 105/243 (43%), Gaps = 40/243 (16%)
Query: 23 SMPRSPSSAGSPRSP---------------GTPGSERV---ASPLECSICFSGYDNIFKT 64
S P SP S +PRSP G+PGS + ASP+EC IC S +D +FK
Sbjct: 18 SGPSSPGSLSAPRSPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFKL 77
Query: 65 PKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP-AGAPALCTSRQL-- 121
PK L C HVFCLECLARL+ A GG AV CP CR PT + P G PAL T L
Sbjct: 78 PKRLDCGHVFCLECLARLSLAT---AGGGNAVACPVCRAPTRLAPRRGLPALPTQSGLLP 134
Query: 122 -QARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPAPARDPAPR 180
AR P + L +P P PG + P PP P R
Sbjct: 135 RDARAPPSRQGSVRFDRRRGLLYLRPPPPPPGPRK-------ARAPPPPPPLRLGRPLSR 187
Query: 181 RGRLAR-CWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTA 239
R LA W LV+A L++ + + A +G PPRP + A
Sbjct: 188 RLSLASPAWVFNAAVALAVLVAAGLVVSGVYIFFLIPHATSSG-------PPRPQLVALA 240
Query: 240 ASP 242
+P
Sbjct: 241 PAP 243
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 105 bits (262), Expect = 4e-23
Identities = 86/243 (35%), Positives = 105/243 (43%), Gaps = 40/243 (16%)
Query: 23 SMPRSPSSAGSPRSP---------------GTPGSERV---ASPLECSICFSGYDNIFKT 64
S P SP S +PRSP G+PGS + ASP+EC IC S +D +FK
Sbjct: 18 SGPSSPGSLSAPRSPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFKL 77
Query: 65 PKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP-AGAPALCTSRQL-- 121
PK L C HVFCLECLARL+ A GG AV CP CR PT + P G PAL T L
Sbjct: 78 PKRLDCGHVFCLECLARLSLAT---AGGGNAVACPVCRAPTRLAPRRGLPALPTQSGLLP 134
Query: 122 -QARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVGLSKPAEPPAPARDPAPR 180
AR P + L +P P PG + P PP P R
Sbjct: 135 RDARAPPSRQGSVRFDRRRGLLYLRPPPPPPGPRK-------ARAPPPPPPLRLGRPLSR 187
Query: 181 RGRLAR-CWARCRDWRRMALVSALLLMLFCVALWPVQCALKTGNLRCLPLPPRPPATSTA 239
R LA W LV+A L++ + + A +G PPRP + A
Sbjct: 188 RLSLASPAWVFNAAVALAVLVAAGLVVSGVYIFFLIPHATSSG-------PPRPQLVALA 240
Query: 240 ASP 242
+P
Sbjct: 241 PAP 243
>gi|153252110 ring finger protein 183 [Homo sapiens]
Length = 192
Score = 75.9 bits (185), Expect = 3e-14
Identities = 61/184 (33%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Query: 50 ECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP 109
EC +C++ ++N F TPK L C H FC+ECLA L+ P R + CP CRQPT V
Sbjct: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARR----RLLCPLCRQPT-VLA 66
Query: 110 AGAPALCTSRQLQARMPAHLRRE-EPVWLEGTKLCCQPLPTTPG--REPGFVCVDVGLSK 166
+G P T M A LR E V LEG +LC + P + R+P +D+G +
Sbjct: 67 SGQPV--TDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDLG-PQ 123
Query: 167 PAEPPAPARDPA----------PRRGRLARCWA----RCRDWRRMALVSALLLMLFCVAL 212
P P D A P L C+ R + ++S LL++F +
Sbjct: 124 PGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFSI-F 182
Query: 213 WPVQ 216
W Q
Sbjct: 183 WTKQ 186
>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
Length = 403
Score = 52.8 bits (125), Expect = 3e-07
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 49 LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQP---VGRPGGEAVPCPFCRQPT 105
L C IC+S IF+ P+ L C+H FC CL + A + RP + CP CR T
Sbjct: 8 LTCPICYS----IFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCRSIT 63
Query: 106 AVPPAGAPALCTSRQLQARMPAHLRREEP 134
+ P G +L + L+A + + + + P
Sbjct: 64 EIAPTGIESLPVNFALRAIIEKYQQEDHP 92
>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
Length = 755
Score = 49.3 bits (116), Expect = 3e-06
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 49 LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
L C IC + PK L C H +C +CLA+LA G V CP CR+ VP
Sbjct: 19 LACKICLEQ----LRAPKTLPCLHTYCQDCLAQLA--------DGGRVRCPECRETVPVP 66
Query: 109 PAGAPALCTS 118
P G + T+
Sbjct: 67 PEGVASFKTN 76
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 48.9 bits (115), Expect = 4e-06
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 36 SPGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEA 95
SPG L CSIC Y + PK L C H FC CL AQ +
Sbjct: 7 SPGPEVQPMDKQFLVCSICLDRY----QCPKVLPCLHTFCERCLQNYIPAQSL------T 56
Query: 96 VPCPFCRQPTAVPPAGAPALCTSRQLQARMPA 127
+ CP CRQ + +P G AL + + + M A
Sbjct: 57 LSCPVCRQTSILPEQGVSALQNNFFISSLMEA 88
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 48.9 bits (115), Expect = 4e-06
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 36 SPGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEA 95
SPG L CSIC Y + PK L C H FC CL AQ +
Sbjct: 7 SPGPEVQPMDKQFLVCSICLDRY----QCPKVLPCLHTFCERCLQNYIPAQSL------T 56
Query: 96 VPCPFCRQPTAVPPAGAPALCTSRQLQARMPA 127
+ CP CRQ + +P G AL + + + M A
Sbjct: 57 LSCPVCRQTSILPEQGVSALQNNFFISSLMEA 88
>gi|27734873 ring finger protein 152 [Homo sapiens]
Length = 203
Score = 48.9 bits (115), Expect = 4e-06
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 47 SPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTA 106
S LEC ICF+ Y + PK L C H C CL ++ +Q + V CP+CR T
Sbjct: 8 SLLECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRTSQ-------KDVRCPWCRGVTK 59
Query: 107 VPPAGAPALCTS--RQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVG 163
+PP + + L H PV+++ C LP +E + D+G
Sbjct: 60 LPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMG 118
>gi|40255283 NHL repeat containing 1 [Homo sapiens]
Length = 395
Score = 48.5 bits (114), Expect = 5e-06
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 43 ERVASPLECSICFSGYDNIF-KTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFC 101
E S LEC +CF + + + P+ LSC HV CL C+A LA P A+ CPFC
Sbjct: 18 EAEISLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAALA------HPRTLALECPFC 71
Query: 102 RQ 103
R+
Sbjct: 72 RR 73
>gi|119220603 ring finger protein 208 [Homo sapiens]
Length = 261
Score = 48.5 bits (114), Expect = 5e-06
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 9 HTAVPP--PRRSSSIASMPR--------------SPSSAGSPRSPGTPGSERVASPLECS 52
HT P PR+ SS PR P + S S G PLEC
Sbjct: 90 HTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGE-----PLECP 144
Query: 53 ICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAV-PPAG 111
C Y+ + P+ LSC H C +CL L + P + + CP CR+ T + G
Sbjct: 145 TCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYK----FISCPTCRRETVLFTDYG 200
Query: 112 APALCTSRQLQARMP 126
AL + + +R+P
Sbjct: 201 LAALAVNTSILSRLP 215
>gi|22749455 ring finger protein 182 [Homo sapiens]
Length = 247
Score = 48.1 bits (113), Expect = 7e-06
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 37 PGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAV 96
P + + LEC IC++ Y+ + PK L C H C +CL ++ G +
Sbjct: 6 PEDTAESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKII---DFGDSPQGVI 62
Query: 97 PCPFCRQPTAVP 108
CPFCR T +P
Sbjct: 63 VCPFCRFETCLP 74
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 49 LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
L CSIC Y N PK L C H FC CL A + + CP CRQ + +P
Sbjct: 21 LICSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL------TLSCPVCRQTSILP 70
Query: 109 PAGAPAL 115
G AL
Sbjct: 71 EKGVAAL 77
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 49 LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
L CSIC Y N PK L C H FC CL A + + CP CRQ + +P
Sbjct: 48 LICSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL------TLSCPVCRQTSILP 97
Query: 109 PAGAPAL 115
G AL
Sbjct: 98 EKGVAAL 104
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 46.6 bits (109), Expect = 2e-05
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 42 SERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFC 101
+E + L C IC + F+ P + C H FC CL R A PGG PCP C
Sbjct: 3 AEDIQEELTCPICL----DYFQDPVSIECGHNFCRGCLHRNWA------PGGGPFPCPEC 52
Query: 102 RQPTAVPPAGAPALCTSR 119
R P+A P A P +R
Sbjct: 53 RHPSA-PAALRPNWALAR 69
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 46.6 bits (109), Expect = 2e-05
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 42 SERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFC 101
+E + L C IC + F+ P + C H FC CL R A PGG PCP C
Sbjct: 3 AEDIQEELTCPICL----DYFQDPVSIECGHNFCRGCLHRNWA------PGGGPFPCPEC 52
Query: 102 RQPTAVPPAGAPALCTSR 119
R P+A P A P +R
Sbjct: 53 RHPSA-PAALRPNWALAR 69
>gi|226442736 ring finger protein 222 [Homo sapiens]
Length = 220
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 41 GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
G + +S EC +C+ + ++ + LSC HVFC +CL + + V + CP
Sbjct: 4 GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
Query: 101 CRQPT 105
CR T
Sbjct: 64 CRYVT 68
>gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 41 GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
G + +S EC +C+ + ++ + LSC HVFC +CL + + V + CP
Sbjct: 4 GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
Query: 101 CRQPT 105
CR T
Sbjct: 64 CRYVT 68
>gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 41 GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
G + +S EC +C+ + ++ + LSC HVFC +CL + + V + CP
Sbjct: 4 GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
Query: 101 CRQPT 105
CR T
Sbjct: 64 CRYVT 68
>gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 41 GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
G + +S EC +C+ + ++ + LSC HVFC +CL + + V + CP
Sbjct: 4 GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
Query: 101 CRQPT 105
CR T
Sbjct: 64 CRYVT 68
>gi|9506663 ring finger protein 186 [Homo sapiens]
Length = 227
Score = 46.2 bits (108), Expect = 3e-05
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 28 PSSAGSPRS-----PGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARL 82
P SAG+ + P S LEC +C Y + + PK L+C H FC CL L
Sbjct: 12 PISAGATTTTTAVAPAGGHSGSTECDLECLVCREPY-SCPRLPKLLACQHAFCAICLKLL 70
Query: 83 AAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQLQA 123
Q ++ CP CR+ TAVP +C+ R +A
Sbjct: 71 LCVQ----DNTWSITCPLCRKVTAVP---GGLICSLRDHEA 104
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 44.7 bits (104), Expect = 8e-05
Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 13/139 (9%)
Query: 49 LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
LEC IC + PK L C H C +CL +L A+ G V CPFC + T +
Sbjct: 18 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSING------VRCPFCSKITRIT 71
Query: 109 PAGAPALCTSRQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFV----CVDVGL 164
+ T ++ E V L + C + LP R G V C +
Sbjct: 72 ---SLTQLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCRSCGLVLCEPCREADH 128
Query: 165 SKPAEPPAPARDPAPRRGR 183
P P ++ A R R
Sbjct: 129 QPPGHCTLPVKEAAEERRR 147
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 44.7 bits (104), Expect = 8e-05
Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 13/139 (9%)
Query: 49 LECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVP 108
LEC IC + PK L C H C +CL +L A+ G V CPFC + T +
Sbjct: 18 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSING------VRCPFCSKITRIT 71
Query: 109 PAGAPALCTSRQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFV----CVDVGL 164
+ T ++ E V L + C + LP R G V C +
Sbjct: 72 ---SLTQLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCRSCGLVLCEPCREADH 128
Query: 165 SKPAEPPAPARDPAPRRGR 183
P P ++ A R R
Sbjct: 129 QPPGHCTLPVKEAAEERRR 147
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 44.7 bits (104), Expect = 8e-05
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 29 SSAGSPRSPGTPGSERVASPLE------CSICFSGYDNIFKTPKELSCTHVFCLECLARL 82
++ G PGT G+E +A E CSIC +F+ P + C H FC C+ R
Sbjct: 2 AAVGPRTGPGT-GAEALALAAELQGEATCSICLE----LFREPVSVECGHSFCRACIGRC 56
Query: 83 AAAQPVGRPGGEA------VPCPFCRQPTAVPPAGAPALCTSRQLQA 123
G G +PCP CR+ PA L +RQL A
Sbjct: 57 WERPGAGSVGAATRAPPFPLPCPQCRE-----PARPSQLRPNRQLAA 98
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 44.7 bits (104), Expect = 8e-05
Identities = 50/169 (29%), Positives = 63/169 (37%), Gaps = 26/169 (15%)
Query: 46 ASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARL---AAAQPVGRPGGEAVPCPFCR 102
+ P C IC + P L C H FCL CL L A G PGG A CP C+
Sbjct: 4 SGPFSCPICLEP----LREPVTLPCGHNFCLACLGALWPHRGASGAGGPGG-AARCPLCQ 58
Query: 103 QPTAVPPAGAPALCTSRQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDV 162
+P S LQ R + P G P P+ P P
Sbjct: 59 EPFPDGLQLRKNHTLSELLQLR-----QGSGPGSGPGPAPALAPEPSAPSALP------- 106
Query: 163 GLSKPAEPPAPARDPAPRRGRLARCWARCRDWRRMALVSALLLMLFCVA 211
+ +P+ P AP +P P RC A C + A + A L L C+A
Sbjct: 107 SVPEPSAPCAP--EPWPAGEEPVRCDA-CPEG---AALPAALSCLSCLA 149
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
Length = 221
Score = 44.7 bits (104), Expect = 8e-05
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 29 SSAGSPRSPGTPGSERVASPLE------CSICFSGYDNIFKTPKELSCTHVFCLECLARL 82
++ G PGT G+E +A E CSIC +F+ P + C H FC C+ R
Sbjct: 2 AAVGPRTGPGT-GAEALALAAELQGEATCSICLE----LFREPVSVECGHSFCRACIGRC 56
Query: 83 AAAQPVGRPGGEA------VPCPFCRQPTAVPPAGAPALCTSRQLQA 123
G G +PCP CR+ PA L +RQL A
Sbjct: 57 WERPGAGSVGAATRAPPFPLPCPQCRE-----PARPSQLRPNRQLAA 98
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 43.9 bits (102), Expect = 1e-04
Identities = 34/92 (36%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 22 ASMPRSPSSAGSPRSPGTPGSERVASPLE-CSICFSGYDNIFKT-PKELSCTHVFCLECL 79
AS P SAG P PG P AS L+ C++C + + PK L C H FCL CL
Sbjct: 102 ASAPAPGPSAGPP--PGPP-----ASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL 154
Query: 80 ARLAAAQPVGRPGGE--------AVPCPFCRQ 103
V PGG + CP CRQ
Sbjct: 155 PEPERQLSVPIPGGSNGDIQQVGVIRCPVCRQ 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,367,237
Number of Sequences: 37866
Number of extensions: 876410
Number of successful extensions: 8368
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 360
Number of HSP's that attempted gapping in prelim test: 7582
Number of HSP's gapped (non-prelim): 1045
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.