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Search of human proteins with 239740705
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740705 PREDICTED: hypothetical protein [Homo sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754291 PREDICTED: hypothetical protein [Homo sapiens] 322 6e-89
gi|239748828 PREDICTED: hypothetical protein XP_002346813 [Homo ... 322 6e-89
gi|239742859 PREDICTED: hypothetical protein XP_002342682 [Homo ... 322 6e-89
gi|239740809 PREDICTED: hypothetical protein [Homo sapiens] 322 6e-89
gi|239740705 PREDICTED: hypothetical protein [Homo sapiens] 322 6e-89
gi|239513967 PREDICTED: hypothetical protein [Homo sapiens] 322 6e-89
gi|239740875 PREDICTED: hypothetical protein XP_002344061 [Homo ... 322 8e-89
gi|239740759 PREDICTED: hypothetical protein [Homo sapiens] 322 8e-89
gi|110227615 echinoderm microtubule associated protein like 3 [H... 34 0.043
gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo s... 34 0.056
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 34 0.056
gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo s... 34 0.056
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 34 0.056
gi|151301154 mucin 6, gastric [Homo sapiens] 31 0.36
gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens] 31 0.47
gi|4759022 RAD9 homolog [Homo sapiens] 31 0.47
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens] 31 0.47
gi|55749678 ninein-like [Homo sapiens] 31 0.47
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 30 0.62
gi|45505145 neuromedin B isoform 2 [Homo sapiens] 30 0.81
gi|229577422 solute carrier family 39, member 11 isoform 1 [Homo... 30 1.1
gi|24497501 forkhead box A1 [Homo sapiens] 30 1.1
gi|83367077 mucin 16 [Homo sapiens] 30 1.1
gi|239753682 PREDICTED: hypothetical protein XP_002345751 [Homo ... 30 1.1
gi|239748296 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239742194 PREDICTED: hypothetical protein XP_002342449 [Homo ... 30 1.1
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 1.1
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 30 1.1
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 30 1.1
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 30 1.1
>gi|239754291 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 322 bits (826), Expect = 6e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
Query: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
>gi|239748828 PREDICTED: hypothetical protein XP_002346813 [Homo
sapiens]
Length = 153
Score = 322 bits (826), Expect = 6e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
Query: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
>gi|239742859 PREDICTED: hypothetical protein XP_002342682 [Homo
sapiens]
Length = 153
Score = 322 bits (826), Expect = 6e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
Query: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
>gi|239740809 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 322 bits (826), Expect = 6e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
Query: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
>gi|239740705 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 322 bits (826), Expect = 6e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
Query: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
>gi|239513967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 322 bits (826), Expect = 6e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
Query: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
>gi|239740875 PREDICTED: hypothetical protein XP_002344061 [Homo
sapiens]
Length = 153
Score = 322 bits (825), Expect = 8e-89
Identities = 152/153 (99%), Positives = 153/153 (100%)
Query: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
Query: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
LLFTDALQAGQSRLLRT+TSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61 LLFTDALQAGQSRLLRTITSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
>gi|239740759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 322 bits (825), Expect = 8e-89
Identities = 152/153 (99%), Positives = 153/153 (100%)
Query: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV
Sbjct: 1 MVPFLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGV 60
Query: 61 LLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
LLFTDALQAGQSRLLRT+TSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ
Sbjct: 61 LLFTDALQAGQSRLLRTITSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQ 120
Query: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR
Sbjct: 121 GQVLGEVVHCGIPSCLHIPGMGGRTGLEPERLR 153
>gi|110227615 echinoderm microtubule associated protein like 3 [Homo
sapiens]
Length = 896
Score = 34.3 bits (77), Expect = 0.043
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 89 TPIRSSGVRGAPSRPSWLPCFLLLPP---LEGNAQGQVLGEVVHCGIPSCLHIPGMGG 143
T R GV G +P ++PCF+ LP L G+++G +L PS PG GG
Sbjct: 445 TLTRKQGVFGKYKKPKFIPCFVFLPDGDILTGDSEGNIL---TWGRSPSDSKTPGRGG 499
>gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo
sapiens]
Length = 554
Score = 33.9 bits (76), Expect = 0.056
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 22 TAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTD 65
T P TP + S SAS HRE A+ D DG +L+TD
Sbjct: 330 TVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTD 373
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 33.9 bits (76), Expect = 0.056
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 22 TAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTD 65
T P TP + S SAS HRE A+ D DG +L+TD
Sbjct: 410 TVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTD 453
>gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo
sapiens]
Length = 565
Score = 33.9 bits (76), Expect = 0.056
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 22 TAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTD 65
T P TP + S SAS HRE A+ D DG +L+TD
Sbjct: 341 TVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTD 384
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 33.9 bits (76), Expect = 0.056
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 22 TAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTD 65
T P TP + S SAS HRE A+ D DG +L+TD
Sbjct: 421 TVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTD 464
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 31.2 bits (69), Expect = 0.36
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 20 HSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLL--RT 77
HST +G+ S +S P S S S PA+ + L T + S LL T
Sbjct: 2171 HSTTLSSGSHSSLSTHPTTASVSASPLFPSSPAASTTIRATLPHTISSPFTLSALLPIST 2230
Query: 78 VTSSGTPT---------LPATPIRSSGVRGAPS 101
VT S TP+ P+TP ++ AP+
Sbjct: 2231 VTVSPTPSSHLASSTIAFPSTPRTTASTHTAPA 2263
>gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]
Length = 366
Score = 30.8 bits (68), Expect = 0.47
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 25/106 (23%)
Query: 48 RERPASR-------CDVDGVLLFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAP 100
RERP R C + VLLF L A R G+PT R AP
Sbjct: 3 RERPPGRGCGVLRRCLLGAVLLFGLRLCAELRR-----AGPGSPT-----------RSAP 46
Query: 101 SRPSWLPCFLLLPPLEGNAQGQVLGEVVHCGIPSCLHIPGMGGRTG 146
P+W P LPP G +G +V + + S P GG +G
Sbjct: 47 PGPAWRPPGPHLPPAPGQPRGASRRQVTY--VRSGRRAPPGGGGSG 90
>gi|4759022 RAD9 homolog [Homo sapiens]
Length = 391
Score = 30.8 bits (68), Expect = 0.47
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 27 GTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQAGQ-SRLLRTVTSSGTPT 85
G+P R H P P +HST H + A+ D+D ++ + + SR+L +++ S P
Sbjct: 276 GSPER--HQPVPQLQAHSTPHPDDFAND-DIDSYMIAMETTIGNEGSRVLPSISLSPGPQ 332
Query: 86 LPATP 90
P +P
Sbjct: 333 PPKSP 337
>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
Length = 1586
Score = 30.8 bits (68), Expect = 0.47
Identities = 35/133 (26%), Positives = 44/133 (33%), Gaps = 8/133 (6%)
Query: 26 AGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTVTSSGTPT 85
AG P S + + S S R AS+C LL Q R + G P
Sbjct: 843 AGRPHNASSADSYDPISTDASRRSSEASQCSGGSGLLNLTPAQQYSLRAKYAAATGGPPP 902
Query: 86 LPATPIRSSGVR------GAPSRPSWLPCFLLLPPLEGNAQGQVLGEVVHCGIPSCLH-I 138
P + +R AP R C L P G + G G P+ H
Sbjct: 903 TPLPGLERMSLRTRLALLDAPERTLPAGCPRPLGPRRG-SDGPTYGHGHAGAAPAFPHEA 961
Query: 139 PGMGGRTGLEPER 151
PG G R +P R
Sbjct: 962 PGGGARRASDPVR 974
>gi|55749678 ninein-like [Homo sapiens]
Length = 1382
Score = 30.8 bits (68), Expect = 0.47
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 3 PFLWLSPGGVTLDPWWEHSTAPVAG--------TPSRISHSPAPGSASHSTSHRERPASR 54
P WL+PG E A AG T + S +PAP ASH S R
Sbjct: 857 PLAWLAPGDGR-----ESEEAAGAGPRRRQAQDTEATQSPAPAPAPASHGPSERWSRMQP 911
Query: 55 CDVDG 59
C VDG
Sbjct: 912 CGVDG 916
>gi|148806908 fibronectin type III domain containing 1 [Homo
sapiens]
Length = 1894
Score = 30.4 bits (67), Expect = 0.62
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 24/129 (18%)
Query: 16 PWWEHSTAPVAGTPSRISHSPAPGSASHSTSHR-ERPASRCDVDGVLLFTDALQAGQ--- 71
P + +T P G P S SPA +++ TSHR PAS D D V D G
Sbjct: 600 PGFSLATQPRPGAPPSASASPAHHASTQGTSHRPSLPASLNDNDLVDSDEDERAVGSLHP 659
Query: 72 ------------------SRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPS--WLPCFLL 111
S +LR +S PA+P R + GA S P L
Sbjct: 660 KGAFAQPRPALSPSRQSPSSVLRDRSSVHPGAKPASPARRTPHSGAAEEDSSASAPPSRL 719
Query: 112 LPPLEGNAQ 120
PP G+++
Sbjct: 720 SPPHGGSSR 728
>gi|45505145 neuromedin B isoform 2 [Homo sapiens]
Length = 154
Score = 30.0 bits (66), Expect = 0.81
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 21 STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTV- 78
+T G S SP+P G+A H++ +R D+ G+LL AL SR +
Sbjct: 51 ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
Query: 79 TSSGTPTLPATPI 91
++GT T TPI
Sbjct: 111 EAAGTNTAEMTPI 123
>gi|229577422 solute carrier family 39, member 11 isoform 1 [Homo
sapiens]
Length = 342
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 62 LFTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGVRGAPSRPSWLPCFLLL 112
L +D + G++ + ++G P PA P+ S G P SW LL+
Sbjct: 148 LLSDKSENGEAYQRKKAAATGLPEGPAVPVPSRGNLAQPGGSSWRRIALLI 198
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 29.6 bits (65), Expect = 1.1
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 7 LSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDA 66
L P ++P +P+A PS + S A G T R P ++ + L T A
Sbjct: 127 LGPYAAAMNP----CMSPMAYAPSNLGRSRAGGGGDAKTFKRSYPHAKPPYSYISLITMA 182
Query: 67 LQAGQSRLL 75
+Q S++L
Sbjct: 183 IQQAPSKML 191
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 29.6 bits (65), Expect = 1.1
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 4 FLWLSPGGVTLDPWWEHSTAPVAGTPSRISHSPAPGSASHSTSHRERP-ASRCDVDGVLL 62
FL LSP G T + E S + T SP PGSA HS P +S V +
Sbjct: 237 FLDLSPKG-TPNSRGETSLELILSTTGYPFSSPEPGSAGHSRISTSAPLSSSASVLDNKI 295
Query: 63 FTDALQAGQSRLLRTVTSSGTPTLPATPIRSSGV 96
++ +GQS L + S G P A+ + +S +
Sbjct: 296 SETSIFSGQS--LTSPLSPGVPEARASTMPNSAI 327
Score = 26.6 bits (57), Expect = 8.9
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 13 TLDPWWEH---STAPVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQA 69
T+ W H ++ PV+ T S SHS + +TS R +S + T
Sbjct: 11686 TMASWVTHPPQTSTPVSRTTSSFSHSSPDATPVMATSPRTEASS-------AVLTTISPG 11738
Query: 70 GQSRLLRTVTSSGTPTLPATP 90
+ +TSSG T P
Sbjct: 11739 APEMVTSQITSSGAATSTTVP 11759
>gi|239753682 PREDICTED: hypothetical protein XP_002345751 [Homo
sapiens]
Length = 186
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 36 PAPGSASHSTSHR-----ERPASRCDVDGV-LLFTDALQAGQSRLLRTVTSSGTPTLPAT 89
P+PG SHS+ +R +S C + G+ L A L V + P
Sbjct: 19 PSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVAVGASGEAPGR 78
Query: 90 PIRSSGVRGAPSRPS 104
P GVRG RP+
Sbjct: 79 PRPPGGVRGLGRRPA 93
>gi|239748296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 36 PAPGSASHSTSHR-----ERPASRCDVDGV-LLFTDALQAGQSRLLRTVTSSGTPTLPAT 89
P+PG SHS+ +R +S C + G+ L A L V + P
Sbjct: 19 PSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVAVGASGEAPGR 78
Query: 90 PIRSSGVRGAPSRPS 104
P GVRG RP+
Sbjct: 79 PRPPGGVRGLGRRPA 93
>gi|239742194 PREDICTED: hypothetical protein XP_002342449 [Homo
sapiens]
Length = 186
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 36 PAPGSASHSTSHR-----ERPASRCDVDGV-LLFTDALQAGQSRLLRTVTSSGTPTLPAT 89
P+PG SHS+ +R +S C + G+ L A L V + P
Sbjct: 19 PSPGCTSHSSGNRAARGDSLRSSSCGLKGLNLALAPERPAADRAQLFAVAVGASGEAPGR 78
Query: 90 PIRSSGVRGAPSRPS 104
P GVRG RP+
Sbjct: 79 PRPPGGVRGLGRRPA 93
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 29.6 bits (65), Expect = 1.1
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 23 APVAGTPSRISHSPAPGSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTVTSSG 82
AP AG P+ +S P PG+A+ + + + S V +QA +T+ +SG
Sbjct: 316 APAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRV---------VQAAPP-AAQTLAASG 365
Query: 83 TPTLPATPIRSSGVRGAPSRPSWLPCFLLLPPLEGNAQG 121
+ A+ + ++GA P+ +P PP G G
Sbjct: 366 PASTAASMVIGPTMQGALPSPAAVP-----PPAPGTPTG 399
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 29.6 bits (65), Expect = 1.1
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 76 RTVTSSGTPTLPATPIRSS--------GVRGAPSRPSWLPCFLLLPPLEGNAQGQVLGEV 127
+T+T G P LP P R G+ G P P +P P + G G
Sbjct: 657 QTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG-IPGSKGEPGIPGIGLPGPPGPK 715
Query: 128 VHCGIPSCLHIPGMGGRTGLE 148
GIP PG GR GLE
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLE 736
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 29.6 bits (65), Expect = 1.1
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 76 RTVTSSGTPTLPATPIRSS--------GVRGAPSRPSWLPCFLLLPPLEGNAQGQVLGEV 127
+T+T G P LP P R G+ G P P +P P + G G
Sbjct: 657 QTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG-IPGSKGEPGIPGIGLPGPPGPK 715
Query: 128 VHCGIPSCLHIPGMGGRTGLE 148
GIP PG GR GLE
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLE 736
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 29.6 bits (65), Expect = 1.1
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 76 RTVTSSGTPTLPATPIRSS--------GVRGAPSRPSWLPCFLLLPPLEGNAQGQVLGEV 127
+T+T G P LP P R G+ G P P +P P + G G
Sbjct: 657 QTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG-IPGSKGEPGIPGIGLPGPPGPK 715
Query: 128 VHCGIPSCLHIPGMGGRTGLE 148
GIP PG GR GLE
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLE 736
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,878,716
Number of Sequences: 37866
Number of extensions: 415996
Number of successful extensions: 1830
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 169
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.