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Search of human proteins with 239509128
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239509128 PREDICTED: hypothetical protein [Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169172033 PREDICTED: hypothetical protein [Homo sapiens] 257 2e-69
gi|169170051 PREDICTED: hypothetical protein [Homo sapiens] 257 2e-69
gi|239509128 PREDICTED: hypothetical protein [Homo sapiens] 257 2e-69
gi|157743252 pecanex-like 3 [Homo sapiens] 34 0.028
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 32 0.11
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 32 0.11
gi|41327726 nicotinic acetylcholine receptor beta 1 subunit prec... 29 0.70
gi|223005864 carboxypeptidase X (M14 family), member 2 [Homo sap... 29 0.91
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 29 0.91
gi|49472835 bridging integrator 2 [Homo sapiens] 29 0.91
gi|169168972 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|169168657 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|169169603 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 28 1.6
gi|239754496 PREDICTED: hypothetical protein XP_002346014 [Homo ... 28 1.6
gi|239749056 PREDICTED: hypothetical protein XP_002346901 [Homo ... 28 1.6
gi|239743084 PREDICTED: hypothetical protein XP_002342735 [Homo ... 28 1.6
gi|239741271 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239508733 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|4504067 aspartate aminotransferase 1 [Homo sapiens] 28 1.6
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 28 1.6
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 28 2.0
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 28 2.0
gi|24308251 bile acid beta-glucosidase [Homo sapiens] 27 2.7
gi|11141875 interleukin 21 [Homo sapiens] 27 3.5
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 27 3.5
gi|5174607 NGFI-A binding protein 2 [Homo sapiens] 27 3.5
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 27 4.5
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 27 4.5
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ... 27 4.5
>gi|169172033 PREDICTED: hypothetical protein [Homo sapiens]
Length = 116
Score = 257 bits (656), Expect = 2e-69
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MPWKASFCSRTAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPIC 60
MPWKASFCSRTAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPIC
Sbjct: 1 MPWKASFCSRTAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPIC 60
Query: 61 SGPGDGWGDPIARPGRGNNLSPGTSAWEVPRWIRVTGEDWLSTGPAECVFINDLTT 116
SGPGDGWGDPIARPGRGNNLSPGTSAWEVPRWIRVTGEDWLSTGPAECVFINDLTT
Sbjct: 61 SGPGDGWGDPIARPGRGNNLSPGTSAWEVPRWIRVTGEDWLSTGPAECVFINDLTT 116
>gi|169170051 PREDICTED: hypothetical protein [Homo sapiens]
Length = 116
Score = 257 bits (656), Expect = 2e-69
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MPWKASFCSRTAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPIC 60
MPWKASFCSRTAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPIC
Sbjct: 1 MPWKASFCSRTAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPIC 60
Query: 61 SGPGDGWGDPIARPGRGNNLSPGTSAWEVPRWIRVTGEDWLSTGPAECVFINDLTT 116
SGPGDGWGDPIARPGRGNNLSPGTSAWEVPRWIRVTGEDWLSTGPAECVFINDLTT
Sbjct: 61 SGPGDGWGDPIARPGRGNNLSPGTSAWEVPRWIRVTGEDWLSTGPAECVFINDLTT 116
>gi|239509128 PREDICTED: hypothetical protein [Homo sapiens]
Length = 116
Score = 257 bits (656), Expect = 2e-69
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MPWKASFCSRTAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPIC 60
MPWKASFCSRTAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPIC
Sbjct: 1 MPWKASFCSRTAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPIC 60
Query: 61 SGPGDGWGDPIARPGRGNNLSPGTSAWEVPRWIRVTGEDWLSTGPAECVFINDLTT 116
SGPGDGWGDPIARPGRGNNLSPGTSAWEVPRWIRVTGEDWLSTGPAECVFINDLTT
Sbjct: 61 SGPGDGWGDPIARPGRGNNLSPGTSAWEVPRWIRVTGEDWLSTGPAECVFINDLTT 116
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 45 SPEPHVETSDEPLPICSGPGDGWGDPIARPGRGNNLSPGTSAWEVPR 91
+PE D+PLP PG GWG + G G+ P W PR
Sbjct: 1859 TPENTAGNGDQPLP----PGPGWGPRSSLSGSGDGRPPPLLQWPPPR 1901
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 11 TAQPANQNTGNHERAPALSLCESQG--CFEDEKEVFSPEPHVETSDEPLPICSGPGDGWG 68
T Q N T N P+++ + G +E K+ + SD + GP G G
Sbjct: 1198 TFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMG 1257
Query: 69 DPIAR---PGRGN 78
DP +R PG GN
Sbjct: 1258 DPYSRAAGPGLGN 1270
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 11 TAQPANQNTGNHERAPALSLCESQG--CFEDEKEVFSPEPHVETSDEPLPICSGPGDGWG 68
T Q N T N P+++ + G +E K+ + SD + GP G G
Sbjct: 1198 TFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMG 1257
Query: 69 DPIAR---PGRGN 78
DP +R PG GN
Sbjct: 1258 DPYSRAAGPGLGN 1270
>gi|41327726 nicotinic acetylcholine receptor beta 1 subunit
precursor [Homo sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 46 PEPHVETSDEPLPICSGPGDGWG 68
P+P + EP P CS PG GWG
Sbjct: 363 PKPERDLMPEP-PHCSSPGSGWG 384
>gi|223005864 carboxypeptidase X (M14 family), member 2 [Homo
sapiens]
Length = 756
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 46 PEPHVETSDEPLPICSGPGDGW 67
PEP +ET PLP +GPG+ W
Sbjct: 50 PEPELETFSPPLP--AGPGEEW 69
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 11 TAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPICSGPGDGWGDP 70
T +N N+G+H +PA + F P P++ S +PLP P DP
Sbjct: 550 TTSSSNSNSGSHSSSPAGPVS------------FPPPPYLARSIDPLPRPPSPAQNPQDP 597
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 28.9 bits (63), Expect = 0.91
Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 38 EDEKEVFSPEPHVETSDEPLPICSGPGDGWGDPIAR--------------PGRGNNLS-- 81
E+E E E DEPLP C+GP P P G LS
Sbjct: 318 EEEIEKEGSEASSSEEDEPLPACNGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSPS 377
Query: 82 --PGTSAWEVPRWIRVTGE 98
P +SA EV R E
Sbjct: 378 GQPSSSATEVVLRTRTASE 396
>gi|169168972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 56 PLPICSGPGDGWGDPIARPGRGNNL-SPG------TSAWEV 89
PLP+ G +GWG + R G G SP T AW+V
Sbjct: 29 PLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCLGLTLAWKV 69
>gi|169168657 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 56 PLPICSGPGDGWGDPIARPGRGNNL-SPG------TSAWEV 89
PLP+ G +GWG + R G G SP T AW+V
Sbjct: 29 PLPLSPGDDNGWGLDLPRSGNGEGTGSPNLDCLGLTLAWKV 69
>gi|169169603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 56 PLPICSGPGDGWGDPIARPGRGNNL-SPG------TSAWEV 89
PLP+ G +GWG + R G G SP T AW+V
Sbjct: 29 PLPLSPGDDNGWGLDLPRSGNGEGTGSPNLDCLGLTLAWKV 69
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 44 FSPEPHVETSDEPLPICSGPGDGWGDPIA---------RPGRGNNLSPGTSAWEVP 90
FSP P D P GP GW DP PG G + PG+ W +P
Sbjct: 11 FSPPPG-GGGDGP----GGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIP 61
>gi|239754496 PREDICTED: hypothetical protein XP_002346014 [Homo
sapiens]
Length = 99
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 43 VFSPEPHVETSDEPLPICSGPG 64
+FSP+P + S++P I GPG
Sbjct: 61 IFSPQPQRDVSNDPRKISGGPG 82
>gi|239749056 PREDICTED: hypothetical protein XP_002346901 [Homo
sapiens]
Length = 99
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 43 VFSPEPHVETSDEPLPICSGPG 64
+FSP+P + S++P I GPG
Sbjct: 61 IFSPQPQRDVSNDPRKISGGPG 82
>gi|239743084 PREDICTED: hypothetical protein XP_002342735 [Homo
sapiens]
Length = 99
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 43 VFSPEPHVETSDEPLPICSGPG 64
+FSP+P + S++P I GPG
Sbjct: 61 IFSPQPQRDVSNDPRKISGGPG 82
>gi|239741271 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 61 SGPGDGWGDPIARPGRGNNLS 81
+GPG GW D RPGR L+
Sbjct: 110 AGPGRGWRDSATRPGRPRALA 130
>gi|239508733 PREDICTED: hypothetical protein [Homo sapiens]
Length = 99
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 43 VFSPEPHVETSDEPLPICSGPG 64
+FSP+P + S++P I GPG
Sbjct: 61 IFSPQPQRDVSNDPRKISGGPG 82
>gi|4504067 aspartate aminotransferase 1 [Homo sapiens]
Length = 413
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 PWKASFCSRTAQP-ANQNTGNHERAPALSLCESQGC 36
PW + Q AN N+ NHE P L L E + C
Sbjct: 48 PWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSC 83
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 64 GDGWGDPIARPGR-GNNLSPGTSAWEVP 90
G GWG+P P + GTSAW P
Sbjct: 1057 GSGWGEPWGEPSTPATTVDNGTSAWGKP 1084
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 27 ALSLCESQGCFEDEKEVFSPEPHVETSDEPLPICSGPGDGWGDPIARPGRGNNLSPGT 84
+++L S E+E E + S +P S G G P+ARP G SPG+
Sbjct: 58 SMALLSSAAAPEEEAEAAA----ATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGS 111
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 27 ALSLCESQGCFEDEKEVFSPEPHVETSDEPLPICSGPGDGWGDPIARPGRGNNLSPGT 84
+++L S E+E E + S +P S G G P+ARP G SPG+
Sbjct: 58 SMALLSSAAAPEEEAEAAA----ATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGS 111
>gi|24308251 bile acid beta-glucosidase [Homo sapiens]
Length = 927
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 11 TAQPANQNTGNHERAPALSLCESQGCFEDEKEVFSPEPHVETSDEPLPICSGPGD 65
T P N TG PA E C +++ +V+ PE T D + C P D
Sbjct: 3 TQDPGNMGTG----VPA---SEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPED 50
>gi|11141875 interleukin 21 [Homo sapiens]
Length = 162
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 WKASFCSRTAQPANQNTGNHERAPALSL 30
W A C + AQ + NTGN+ER +S+
Sbjct: 73 WSAFSCFQKAQLKSANTGNNERIINVSI 100
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 38 EDEKEVFSPEPHVETSDEP-----LPICSGPGDGWGDP 70
E E+ + PEP E +EP P GPG G G P
Sbjct: 56 EPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAP 93
>gi|5174607 NGFI-A binding protein 2 [Homo sapiens]
Length = 525
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 44 FSPEPHVETSDEPLPICSGPGDGWGDPIARPGR 76
FSP+ +E ++ P+ GPG GDP PGR
Sbjct: 158 FSPKSPLELGEKLSPLPGGPGA--GDPRIWPGR 188
>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
sapiens]
Length = 427
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 61 SGPGDGWGDPIARPGRGN-NLSPG 83
+ PG G+P RPGRG+ N +PG
Sbjct: 254 AAPGGSLGNPRLRPGRGSANQTPG 277
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 61 SGPGDGWGDPIARPGRGN-NLSPG 83
+ PG G+P RPGRG+ N +PG
Sbjct: 364 AAPGGSLGNPRLRPGRGSANQTPG 387
>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
sapiens]
Length = 427
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 61 SGPGDGWGDPIARPGRGN-NLSPG 83
+ PG G+P RPGRG+ N +PG
Sbjct: 254 AAPGGSLGNPRLRPGRGSANQTPG 277
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,592,864
Number of Sequences: 37866
Number of extensions: 383179
Number of successful extensions: 682
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 56
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.