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Search of human proteins with 239508952
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508952 PREDICTED: hypothetical protein [Homo sapiens]
(83 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754634 PREDICTED: hypothetical protein [Homo sapiens] 164 1e-41
gi|239749191 PREDICTED: hypothetical protein XP_002346945 [Homo ... 164 1e-41
gi|239743271 PREDICTED: hypothetical protein XP_002342782 [Homo ... 164 1e-41
gi|239508952 PREDICTED: hypothetical protein [Homo sapiens] 164 1e-41
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 33 0.037
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 33 0.037
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 0.11
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.11
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 32 0.11
gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens] 31 0.19
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 31 0.24
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 31 0.24
gi|164419758 bromodomain containing 2 [Homo sapiens] 31 0.24
gi|4826806 bromodomain containing 2 [Homo sapiens] 31 0.24
gi|50312655 heat shock transcription factor, Y-linked 1 isoform ... 30 0.32
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 30 0.32
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 30 0.32
gi|32526913 heat shock transcription factor, Y linked 2 isoform ... 30 0.32
gi|55750053 atrophin-1 [Homo sapiens] 30 0.41
gi|55750041 atrophin-1 [Homo sapiens] 30 0.41
gi|50083281 KIAA1853 protein [Homo sapiens] 30 0.41
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 30 0.54
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 29 0.70
gi|55741677 SET domain containing 1A [Homo sapiens] 29 0.70
gi|67782356 corneodesmosin precursor [Homo sapiens] 29 0.70
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 29 0.70
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 29 0.70
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 29 0.92
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 29 0.92
>gi|239754634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 164 bits (416), Expect = 1e-41
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS
Sbjct: 1 MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
Query: 61 MSGSFNFGPSEWLDRDLSSAELV 83
MSGSFNFGPSEWLDRDLSSAELV
Sbjct: 61 MSGSFNFGPSEWLDRDLSSAELV 83
>gi|239749191 PREDICTED: hypothetical protein XP_002346945 [Homo
sapiens]
Length = 83
Score = 164 bits (416), Expect = 1e-41
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS
Sbjct: 1 MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
Query: 61 MSGSFNFGPSEWLDRDLSSAELV 83
MSGSFNFGPSEWLDRDLSSAELV
Sbjct: 61 MSGSFNFGPSEWLDRDLSSAELV 83
>gi|239743271 PREDICTED: hypothetical protein XP_002342782 [Homo
sapiens]
Length = 83
Score = 164 bits (416), Expect = 1e-41
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS
Sbjct: 1 MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
Query: 61 MSGSFNFGPSEWLDRDLSSAELV 83
MSGSFNFGPSEWLDRDLSSAELV
Sbjct: 61 MSGSFNFGPSEWLDRDLSSAELV 83
>gi|239508952 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 164 bits (416), Expect = 1e-41
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS
Sbjct: 1 MMGTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
Query: 61 MSGSFNFGPSEWLDRDLSSAELV 83
MSGSFNFGPSEWLDRDLSSAELV
Sbjct: 61 MSGSFNFGPSEWLDRDLSSAELV 83
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 6 CSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPD 50
CS S+S + + RSSS SS SSSSS+S SS SS D
Sbjct: 159 CSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSS 47
T + S+S S+ R + RR+ S SS SSSSS+S SS SS
Sbjct: 155 TSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSS 198
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 6 CSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPD 50
CS S+S + + RSSS SS SSSSS+S SS SS D
Sbjct: 159 CSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSS 47
T + S+S S+ R + RR+ S SS SSSSS+S SS SS
Sbjct: 155 TSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSS 198
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/62 (38%), Positives = 29/62 (46%)
Query: 3 GTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMS 62
G CS +SS + + SSS SS SSSSS+S SS SS + S S S
Sbjct: 2599 GRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2658
Query: 63 GS 64
S
Sbjct: 2659 SS 2660
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/76 (32%), Positives = 31/76 (40%)
Query: 5 GCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGS 64
GC + R + SSS SS SSSSS+S SS SS + S S S S
Sbjct: 2594 GCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2653
Query: 65 FNFGPSEWLDRDLSSA 80
+ S SS+
Sbjct: 2654 SSSSSSSSSSSSSSSS 2669
Score = 28.9 bits (63), Expect = 0.92
Identities = 24/62 (38%), Positives = 28/62 (45%)
Query: 3 GTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMS 62
GTG S+ S + SSS SS SSSSS+S SS SS + S S S
Sbjct: 2596 GTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2655
Query: 63 GS 64
S
Sbjct: 2656 SS 2657
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 7 SVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFP 55
S SSS S + SSS SS SSSSS+S + S D + P
Sbjct: 2639 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAP 2687
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/54 (38%), Positives = 24/54 (44%)
Query: 7 SVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
S SSS S + SSS SS SSSSS + S SS + P PS
Sbjct: 2641 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPS 2694
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 21 KARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGSFNFGPSE 71
+ RRSSS SS SSSSS+S SS SS + S S S S + P++
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAK 2653
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 9 SSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFP 55
SSS S + SSS SS SSSSS+S SS SS +P+ P
Sbjct: 2608 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 21 KARRSSSESSLFSSSSSASIPSSERSS 47
K RRSSS SS SSSSS+S SS SS
Sbjct: 2528 KERRSSSSSSSSSSSSSSSSSSSSSSS 2554
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/65 (36%), Positives = 28/65 (43%)
Query: 7 SVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGSFN 66
S SSS S + SSS SS SSSSS+S SS SS P+ P +
Sbjct: 2608 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKK 2667
Query: 67 FGPSE 71
P E
Sbjct: 2668 PPPGE 2672
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSS 47
TG S+ + L+ + + SSS SS SSSSS+S SS SS
Sbjct: 2513 TGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSS 2556
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTP 52
SSS SS SSSS +S SE SS+P P
Sbjct: 2545 SSSSSSSSSSSSGSSSSDSEGSSLPVQP 2572
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 19 RLKARRSSSESSLFSSSSSASIPSSERSSIPDT 51
R + SSS SS SSSSS+S SS SS D+
Sbjct: 2531 RSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDS 2563
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 19 RLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGS 64
R + SSS SS SSSSS+S SS SS + S S S S
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTPSFP 55
SSS SS SSSSS+S S SS + S P
Sbjct: 2539 SSSSSSSSSSSSSSSSSSGSSSSDSEGSSLP 2569
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 7 SVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGSFN 66
S S SDSE C +R SSS SS S S + SS SS S S S S +
Sbjct: 2132 SDSDSDSERSSC--SSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSS 2189
Query: 67 FGPSEWLDRDLSSAE 81
SE D D A+
Sbjct: 2190 SSSSEESDSDEEEAQ 2204
Score = 28.9 bits (63), Expect = 0.92
Identities = 20/43 (46%), Positives = 23/43 (53%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERS 46
+ CS S S S + SSS SS SSSSS+S SSE S
Sbjct: 2154 SSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEES 2196
>gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens]
Length = 599
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 25 SSSESSLFSSSSSASI----------PSSERSSIPDT--PSFPRYFPSMSGSFNFGPSEW 72
SS SSL + S S+ P S + + T PS PS +FGP++W
Sbjct: 361 SSQSSSLLTESEQCSLDGKKLGAQASPGSRQEGLTQTYAPSGRSLAPSGGSGSSFGPTDW 420
Query: 73 LDRDLSSAELV 83
L + L S V
Sbjct: 421 LPQTLDSLPYV 431
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGSFN--FGPSEWLDRDLS 78
SSS SS SSSSS+S SS ++ PD P P + F+ F +W DLS
Sbjct: 98 SSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPTPQWGIVDLS 153
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGSFN--FGPSEWLDRDLS 78
SSS SS SSSSS+S SS ++ PD P P + F+ F +W DLS
Sbjct: 98 SSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPTPQWGIVDLS 153
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 9 SSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERS 46
SSS ++ + RL A SSS+SS SSSSS+S S S
Sbjct: 763 SSSAQQVAVSRLSASSSSSDSSSSSSSSSSSDTSDSDS 800
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 9 SSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERS 46
SSS ++ + RL A SSS+SS SSSSS+S S S
Sbjct: 763 SSSAQQVAVSRLSASSSSSDSSSSSSSSSSSDTSDSDS 800
>gi|50312655 heat shock transcription factor, Y-linked 1 isoform 1
[Homo sapiens]
Length = 401
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 26 SSESSLFSSSSSASIPSSERSSIPD---TPSFP--RYFPSMSGSFNFGPSEWLDRD 76
+SE SLFS+S + ++P + SS+ S P FP S S + GPSE + D
Sbjct: 233 ASEESLFSASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATD 288
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/35 (57%), Positives = 20/35 (57%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFP 59
SSS SS SSSSSAS SS SS P S P P
Sbjct: 88 SSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSP 122
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 22 ARRSSSESSLFSSSSSASIPSSERSSIPDTPSFP 55
A SSS SS SSSSS++ SS SS P+ P
Sbjct: 84 ASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASP 117
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 22 ARRSSSESSLFSSSSSASIPSSERSSIPDTP 52
A SSS SS SSSSS+S SS SS P
Sbjct: 83 AASSSSSSSSSSSSSSSSASSSSSSSSSSPP 113
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPR 56
T S SSS S SSS SS +SSSS+S SS + P S PR
Sbjct: 82 TAASSSSSSSS----------SSSSSSSSASSSSSSSSSSPPPASPPASSPPR 124
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFP 55
T + SSS S + SSS SS SS AS P+S + + P P
Sbjct: 81 TTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVP 132
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/35 (57%), Positives = 20/35 (57%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFP 59
SSS SS SSSSSAS SS SS P S P P
Sbjct: 88 SSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSP 122
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 22 ARRSSSESSLFSSSSSASIPSSERSSIPDTPSFP 55
A SSS SS SSSSS++ SS SS P+ P
Sbjct: 84 ASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASP 117
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 22 ARRSSSESSLFSSSSSASIPSSERSSIPDTP 52
A SSS SS SSSSS+S SS SS P
Sbjct: 83 AASSSSSSSSSSSSSSSSASSSSSSSSSSPP 113
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPR 56
T S SSS S SSS SS +SSSS+S SS + P S PR
Sbjct: 82 TAASSSSSSSS----------SSSSSSSSASSSSSSSSSSPPPASPPASSPPR 124
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFP 55
T + SSS S + SSS SS SS AS P+S + + P P
Sbjct: 81 TTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVP 132
>gi|32526913 heat shock transcription factor, Y linked 2 isoform 1
[Homo sapiens]
Length = 401
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 26 SSESSLFSSSSSASIPSSERSSIPD---TPSFP--RYFPSMSGSFNFGPSEWLDRD 76
+SE SLFS+S + ++P + SS+ S P FP S S + GPSE + D
Sbjct: 233 ASEESLFSASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATD 288
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDT---PSFPRYFP 59
SSS SS ++SSS+S SS S P + PS+P FP
Sbjct: 376 SSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFP 413
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDT---PSFPRYFP 59
SSS SS ++SSS+S SS S P + PS+P FP
Sbjct: 376 SSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFP 413
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 23 RRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
+RS S S +SS S P S S +PS+ RY PS
Sbjct: 426 KRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYSRYSPS 463
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 29.6 bits (65), Expect = 0.54
Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 5 GCSVSSSDSELRLCRLKARR---SSSESSLFSSSSSASIPSSERSSIPD 50
G S S + KARR SSS SS SSSSS+S SS SS D
Sbjct: 174 GAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 222
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 25 SSSESSLFSSSSSASIPSSERSS---IPDTPSFPRYFPSMSGSFNF 67
SSS SS SSS S S PSS SS +P P P + S S SF F
Sbjct: 175 SSSPSS--SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPF 218
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 25 SSSESSLFSSSSSASIPSSERSS---IPDTPSFPRYFPSMSGSFNF 67
SSS SS SSS S S PSS SS +P P P + S S SF F
Sbjct: 175 SSSPSS--SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPF 218
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPS 60
+ S ++S + A S+S SSL SSSSS+S SS + D ++P Y+ S
Sbjct: 317 SSASTTASTAIAATTAATASSSASSSSLSSSSSSSSSSSSSQFRSSDA-NYPAYYES 372
Score = 28.9 bits (63), Expect = 0.92
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 9 SSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSS 47
S+SDSE + SSS SS SSSSS+S SSE SS
Sbjct: 1029 STSDSES-----SSSSSSSSSSSSSSSSSSSSSSSESSS 1062
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 3 GTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSER----SSIPDTPSFPRYF 58
G S S S+S + SSS SS SSSS +S E +++P PR
Sbjct: 1025 GENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPREV 1084
Query: 59 P 59
P
Sbjct: 1085 P 1085
>gi|67782356 corneodesmosin precursor [Homo sapiens]
Length = 529
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 2 MGTGCSVSSSDSELR--LCRLKARRSSSESSLFS-SSSSASIPSSER---SSIPDTPSFP 55
+G G ++ ++D+ R L + +SSS S F SSS S+ S++R S IPD+P
Sbjct: 170 VGNGSALPTNDNSYRGILNPSQPGQSSSSSQTFGVSSSGQSVSSNQRPCSSDIPDSPCSG 229
Query: 56 RYFPSMSGSF 65
S SG +
Sbjct: 230 GPIVSHSGPY 239
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 9 SSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPR 56
+SS S + SSS SS SSSSS+S SS SS + SF +
Sbjct: 148 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSK 195
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/44 (45%), Positives = 23/44 (52%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSS 47
T S SSS S + SSS SS SSSSS+S SS S+
Sbjct: 148 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 191
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/43 (46%), Positives = 23/43 (53%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGSFNF 67
SSS SS SSSSS+S SS SS + S S S S +F
Sbjct: 151 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSF 193
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGSFN 66
SSS SS SSSSS+S SS SS + S S S SF+
Sbjct: 153 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFS 194
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/47 (44%), Positives = 24/47 (51%)
Query: 9 SSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFP 55
SSS S + SSS SS SSSSS+S SS SS + S P
Sbjct: 150 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKP 196
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 7 SVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSS 47
S+ +S S + SSS SS SSSSS+S SS SS
Sbjct: 145 SIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 7 SVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSS 47
S SSS S + SSS SS SSSSS+S SS +S
Sbjct: 152 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTS 192
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/43 (46%), Positives = 22/43 (51%)
Query: 7 SVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIP 49
S SSS S + SSS SS SSSSS+S SS S P
Sbjct: 154 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKP 196
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGS 64
SSS SS SSSSS+S SS SS + S S S S
Sbjct: 149 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 25 SSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMSGS 64
SSS SS SSSSS+S SS SS + S S S S
Sbjct: 150 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPS 53
+ S SSS+SE + S ++ S SSSSSAS +S SS D+ S
Sbjct: 96 SSASDSSSESEETSTSSSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDS 145
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 4 TGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPS 53
T S SS DS+ + S+S ++ SSS S S SS SS T S
Sbjct: 108 TSTSSSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSSSSSSTSTDS 157
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 28.9 bits (63), Expect = 0.92
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 3 GTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMS 62
G G S SS S SSS SS SSSSS+S PSS S + S
Sbjct: 450 GGGSSSGSSSS-----------SSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNE 498
Query: 63 GSFNFGPS 70
GS + G S
Sbjct: 499 GSSSSGSS 506
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 28.9 bits (63), Expect = 0.92
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 3 GTGCSVSSSDSELRLCRLKARRSSSESSLFSSSSSASIPSSERSSIPDTPSFPRYFPSMS 62
G G S SS S SSS SS SSSSS+S PSS S + S
Sbjct: 450 GGGSSSGSSSS-----------SSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNE 498
Query: 63 GSFNFGPS 70
GS + G S
Sbjct: 499 GSSSSGSS 506
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.121 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,125,872
Number of Sequences: 37866
Number of extensions: 112312
Number of successful extensions: 1547
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 422
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.