Guide to the Human Genome
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Name: LOC100293248 Sequence: fasta or formatted (83aa) NCBI GI: 239754634
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          3           1
 C cysteine            2.4          2           1
 D aspartate           4.8          4           1
 E glutamate           6.0          5           1
 F phenylalanine       6.0          5           1
 G glycine             4.8          4           1
 H histidine           0.0          0           0
 I isoleucine          2.4          2           1
 K lysine              1.2          1           1
 L leucine             8.4          7           1
 M methionine          3.6          3           2
 N asparagine          1.2          1           1
 P proline             7.2          6           1
 Q glutamine           0.0          0           0
 R arginine            8.4          7           2
 S serine             32.5         27           5
 T threonine           2.4          2           1
 V valine              2.4          2           1
 W tryptophan          1.2          1           1
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290456          1.000   PREDICTED: hypothetical protein XP_002346945 
LOC100289123          1.000   PREDICTED: hypothetical protein XP_002342782 
LOC100289123          1.000   PREDICTED: hypothetical protein 
ARL6IP4               0.058   SRp25 nuclear protein isoform 4 
ARL6IP4               0.058   SRp25 nuclear protein isoform 2 
TNRC18                0.050   trinucleotide repeat containing 18 
SRRM2                 0.050   splicing coactivator subunit SRm300 
CHD9                  0.050   chromodomain helicase DNA binding protein 9 
ZC3H12A               0.043   zinc finger CCCH-type containing 12A 
LOC100133142          0.043   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.043   PREDICTED: similar to zinc finger protein 208 [Homo...
BRD2                  0.043   bromodomain containing 2 
BRD2                  0.043   bromodomain containing 2 
HSFY1                 0.036   heat shock transcription factor, Y-linked 1 isoform ...
ZBTB4                 0.036   zinc finger and BTB domain containing 4 
ZBTB4                 0.036   zinc finger and BTB domain containing 4 
HSFY2                 0.036   heat shock transcription factor, Y linked 2 isoform ...
ATN1                  0.036   atrophin-1 
ATN1                  0.036   atrophin-1 
KIAA1853              0.036   KIAA1853 protein 
ARL6IP4               0.036   SRp25 nuclear protein isoform 1 
LOC100288635          0.029   PREDICTED: hypothetical protein 
LOC100288635          0.029   PREDICTED: hypothetical protein XP_002343184 
SETD1A                0.029   SET domain containing 1A 
CDSN                  0.029   corneodesmosin precursor 
MLLT3                 0.029   myeloid/lymphoid or mixed-lineage leukemia (trithor...
ZCCHC10               0.029   zinc finger, CCHC domain containing 10 
RLIM                  0.029   ring finger protein, LIM domain interacting 
RLIM                  0.029   ring finger protein, LIM domain interacting 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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