Guide to the Human Genome
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Name: LOC100128081 Sequence: fasta or formatted (186aa) NCBI GI: 239508755
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {186aa} PREDICTED: hypothetical protein
alt mRNA {186aa} PREDICTED: hypothetical protein
alt prot {260aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         10           2
 C cysteine            4.3          8           2
 D aspartate           2.7          5           1
 E glutamate           2.2          4           1
 F phenylalanine       2.2          4           1
 G glycine             5.4         10           1
 H histidine           1.6          3           1
 I isoleucine          2.7          5           1
 K lysine              4.8          9           1
 L leucine            11.3         21           2
 M methionine          2.2          4           1
 N asparagine          1.6          3           1
 P proline             9.7         18           2
 Q glutamine           4.8          9           1
 R arginine            6.5         12           2
 S serine             11.8         22           2
 T threonine           6.5         12           2
 V valine              7.0         13           2
 W tryptophan          5.4         10           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128081          1.000   PREDICTED: hypothetical protein 
LOC100128081          1.000   PREDICTED: hypothetical protein 
LOC100128081          1.000   PREDICTED: hypothetical protein 
MUC2                  0.024   mucin 2 precursor 
FAM23A                0.021   hypothetical protein LOC653567 
LOC100289299          0.021   PREDICTED: hypothetical protein XP_002343016 isofor...
LOC100289299          0.021   PREDICTED: hypothetical protein XP_002343015 isofor...
GGN                   0.016   gametogenetin 
PLBD2                 0.013   phospholipase B domain containing 2 isoform 1 precu...
PLBD2                 0.013   phospholipase B domain containing 2 isoform 2 precu...
HCFC1                 0.013   host cell factor 1 
PROM2                 0.013   prominin 2 
LOC100132635          0.013   PREDICTED: similar to mucin 5, partial 
LTBP2                 0.013   latent transforming growth factor beta binding protei...
PRG4                  0.011   proteoglycan 4 isoform D 
PRG4                  0.011   proteoglycan 4 isoform C 
PRG4                  0.011   proteoglycan 4 isoform B 
PRG4                  0.011   proteoglycan 4 isoform A 
RNF113B               0.011   ring finger protein 113B 
LOC100288878          0.008   PREDICTED: hypothetical protein XP_002342781 
LOC100288878          0.008   PREDICTED: hypothetical protein 
ZNF804A               0.008   zinc finger protein 804A 
MUC4                  0.008   mucin 4 isoform a 
SLC5A11               0.008   solute carrier family 5 (sodium/glucose cotransporte...
C17orf46              0.008   hypothetical protein LOC124783 
LOC100133142          0.008   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.008   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100289242          0.008   PREDICTED: hypothetical protein XP_002342243 
ETV3L                 0.008   ets variant 3-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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