Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289299 Sequence: fasta or formatted (351aa) NCBI GI: 239744006
Description:

PREDICTED: hypothetical protein XP_002343015 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {274aa} PREDICTED: hypothetical protein XP_002343016 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         18           2
 C cysteine            1.4          5           1
 D aspartate           2.6          9           1
 E glutamate           3.7         13           1
 F phenylalanine       5.1         18           1
 G glycine             3.7         13           1
 H histidine           1.7          6           1
 I isoleucine          8.5         30           2
 K lysine              3.4         12           2
 L leucine            12.8         45           2
 M methionine          3.1         11           2
 N asparagine          2.8         10           1
 P proline             5.7         20           1
 Q glutamine           4.0         14           1
 R arginine            5.4         19           2
 S serine             10.3         36           2
 T threonine           6.6         23           2
 V valine              8.8         31           2
 W tryptophan          1.7          6           1
 Y tyrosine            3.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343015 isofor... 
FAM23A                1.000   hypothetical protein LOC653567 
LOC100289299          0.704   PREDICTED: hypothetical protein XP_002343016 isofor...
MUC16                 0.012   mucin 16 
LOC100128081          0.012   PREDICTED: hypothetical protein 
LOC100128081          0.012   PREDICTED: hypothetical protein 
LOC100128081          0.012   PREDICTED: hypothetical protein 
LOC100128081          0.012   PREDICTED: hypothetical protein 
GLP1R                 0.012   glucagon-like peptide 1 receptor 
LOC729213             0.011   PREDICTED: similar to ectonucleotide pyrophosphatas...
MADD                  0.009   MAP-kinase activating death domain-containing prote...
MADD                  0.009   MAP-kinase activating death domain-containing protei...
SRRM1                 0.009   serine/arginine repetitive matrix 1 
PAP2D                 0.008   phosphatidic acid phosphatase type 2d isoform 1 [Hom...
PAP2D                 0.008   phosphatidic acid phosphatase type 2d isoform 2 [Hom...
C9orf144B             0.006   hypothetical protein LOC259308 
CYP3A43               0.006   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.006   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.006   cytochrome P450, family 3, subfamily A, polypeptide ...
HRH2                  0.006   histamine receptor H2 isoform 1 
HRH2                  0.006   histamine receptor H2 isoform 2 
FAM110B               0.005   hypothetical protein LOC90362 
SLC19A2               0.005   solute carrier family 19, member 2 
KIAA1191              0.005   hypothetical protein LOC57179 isoform a 
KIAA1191              0.005   hypothetical protein LOC57179 isoform b 
KIAA1191              0.005   hypothetical protein LOC57179 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press