Guide to the Human Genome
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Search of human proteins with 237858705

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|237858705 RPA interacting protein isoform d [Homo sapiens]
         (106 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237858705 RPA interacting protein isoform d [Homo sapiens]         213   2e-56
gi|237858768 RPA interacting protein isoform f [Homo sapiens]         209   3e-55
gi|237858765 RPA interacting protein isoform e [Homo sapiens]         209   3e-55
gi|237858701 RPA interacting protein isoform c [Homo sapiens]         209   3e-55
gi|237858698 RPA interacting protein isoform a [Homo sapiens]         209   3e-55
gi|237858695 RPA interacting protein isoform b [Homo sapiens]         209   3e-55
gi|209862789 microtubule associated monoxygenase, calponin and L...    29   0.72 
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [...    28   1.2  
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom...    28   1.6  
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo...    28   1.6  
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho...    28   1.6  
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho...    28   1.6  
gi|27886524 nuclear factor of activated T-cells 5 isoform a [Hom...    28   1.6  
gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]       28   1.6  
gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]       28   1.6  
gi|32454748 origin recognition complex subunit 4 [Homo sapiens]        28   2.1  
gi|32454746 origin recognition complex subunit 4 [Homo sapiens]        28   2.1  
gi|32454750 origin recognition complex subunit 4 [Homo sapiens]        28   2.1  
gi|148806928 hypothetical protein LOC57482 [Homo sapiens]              28   2.1  
gi|169216384 PREDICTED: similar to hCG1805148 [Homo sapiens]           27   2.7  
gi|239747151 PREDICTED: hypothetical protein XP_002343928 [Homo ...    27   2.7  
gi|169216638 PREDICTED: similar to hCG1805148 [Homo sapiens]           27   2.7  
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ...    27   3.6  
gi|4506501 regulatory factor X-associated protein [Homo sapiens]       27   3.6  
gi|156523268 transcriptional adaptor 2 (ADA2 homolog, yeast)-bet...    27   3.6  
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa...    27   4.6  
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    26   6.1  
gi|48717285 hypothetical protein LOC389763 [Homo sapiens]              26   6.1  
gi|169646754 angiopoietin 2 isoform c precursor [Homo sapiens]         26   6.1  

>gi|237858705 RPA interacting protein isoform d [Homo sapiens]
          Length = 106

 Score =  213 bits (543), Expect = 2e-56
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQGL 106
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQGL
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQGL 106


>gi|237858768 RPA interacting protein isoform f [Homo sapiens]
          Length = 106

 Score =  209 bits (533), Expect = 3e-55
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104


>gi|237858765 RPA interacting protein isoform e [Homo sapiens]
          Length = 148

 Score =  209 bits (533), Expect = 3e-55
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104


>gi|237858701 RPA interacting protein isoform c [Homo sapiens]
          Length = 172

 Score =  209 bits (533), Expect = 3e-55
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104


>gi|237858698 RPA interacting protein isoform a [Homo sapiens]
          Length = 231

 Score =  209 bits (533), Expect = 3e-55
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104


>gi|237858695 RPA interacting protein isoform b [Homo sapiens]
          Length = 219

 Score =  209 bits (533), Expect = 3e-55
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104


>gi|209862789 microtubule associated monoxygenase, calponin and LIM
            domain containing 3 isoform 1 [Homo sapiens]
          Length = 2002

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 16   VGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEE 68
            +G  PWKEA R   L + ++  +        + S GPGN +     +E  EEE
Sbjct: 958  LGGVPWKEAVRIHALLKGKSEEE-----LEASKSFGPGNEEEEEEEEEYEEEE 1005


>gi|121583542 mitogen-activated protein kinase kinase kinase 15
           [Homo sapiens]
          Length = 788

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 3   ESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQ 62
           E  R+PR  L  L+  P    A   R L      RD+ L   R+       +S+   ++ 
Sbjct: 439 ERTRAPRHHLGHLLSVPDESSALEDRGLASSPEDRDQGLFLLRK-------DSERRAILY 491

Query: 63  EVMEEEWNALQSVENCPEDLAQLEELIDMAV 93
           +++ EE N  Q   N  E +AQ  E + ++V
Sbjct: 492 KILWEEQN--QVASNLQECVAQSSEELHLSV 520


>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
           sapiens]
          Length = 1455

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 35  NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
           NS  +L N  +Q       GS+  G+S +  LVQ+V+E +      + + P+    ++E 
Sbjct: 690 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 749

Query: 89  IDMAVLEEIQQ 99
           +   + +++ Q
Sbjct: 750 LSADIFQQVSQ 760


>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
           sapiens]
          Length = 1531

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 35  NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
           NS  +L N  +Q       GS+  G+S +  LVQ+V+E +      + + P+    ++E 
Sbjct: 766 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 825

Query: 89  IDMAVLEEIQQ 99
           +   + +++ Q
Sbjct: 826 LSADIFQQVSQ 836


>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
           sapiens]
          Length = 1548

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 35  NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
           NS  +L N  +Q       GS+  G+S +  LVQ+V+E +      + + P+    ++E 
Sbjct: 783 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 842

Query: 89  IDMAVLEEIQQ 99
           +   + +++ Q
Sbjct: 843 LSADIFQQVSQ 853


>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
           sapiens]
          Length = 1549

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 35  NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
           NS  +L N  +Q       GS+  G+S +  LVQ+V+E +      + + P+    ++E 
Sbjct: 784 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 843

Query: 89  IDMAVLEEIQQ 99
           +   + +++ Q
Sbjct: 844 LSADIFQQVSQ 854


>gi|27886524 nuclear factor of activated T-cells 5 isoform a [Homo
           sapiens]
          Length = 1455

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 35  NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
           NS  +L N  +Q       GS+  G+S +  LVQ+V+E +      + + P+    ++E 
Sbjct: 690 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 749

Query: 89  IDMAVLEEIQQ 99
           +   + +++ Q
Sbjct: 750 LSADIFQQVSQ 760


>gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]
          Length = 965

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 62  QEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEE 96
           QEV+++E   + S  +    L +LE+LID  ++ E
Sbjct: 311 QEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAE 345


>gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]
          Length = 977

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 62  QEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEE 96
           QEV+++E   + S  +    L +LE+LID  ++ E
Sbjct: 323 QEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAE 357


>gi|32454748 origin recognition complex subunit 4 [Homo sapiens]
          Length = 436

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 53  GNSQNSFLVQEVMEEE---WNALQSVENCPEDLAQ 84
           GNSQ  + + +++ +     NALQ   NCP D+ Q
Sbjct: 393 GNSQREYQLMKLLLDNTQIMNALQKYPNCPTDVRQ 427


>gi|32454746 origin recognition complex subunit 4 [Homo sapiens]
          Length = 436

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 53  GNSQNSFLVQEVMEEE---WNALQSVENCPEDLAQ 84
           GNSQ  + + +++ +     NALQ   NCP D+ Q
Sbjct: 393 GNSQREYQLMKLLLDNTQIMNALQKYPNCPTDVRQ 427


>gi|32454750 origin recognition complex subunit 4 [Homo sapiens]
          Length = 436

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 53  GNSQNSFLVQEVMEEE---WNALQSVENCPEDLAQ 84
           GNSQ  + + +++ +     NALQ   NCP D+ Q
Sbjct: 393 GNSQREYQLMKLLLDNTQIMNALQKYPNCPTDVRQ 427


>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
          Length = 1233

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 3   ESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQ 62
           E+ R+PR    + + +P W++A R     R R  R+RL     +        ++    ++
Sbjct: 282 EAERAPREEQQRSLEAPGWEDAER-----REREERERLEAEEERRRLQAQAQAEERRRLE 336

Query: 63  E--VMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQG 105
           E   +EE     +    C E+L + EE       E  QQE   QG
Sbjct: 337 EDARLEERRRQEEEEGRCAEELKRQEEEEAEGWEELEQQEAEVQG 381


>gi|169216384 PREDICTED: similar to hCG1805148 [Homo sapiens]
          Length = 476

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 46  QAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQE 100
           Q+G+         F+   ++ EEW A    E  PED  +  E    AVLEE + E
Sbjct: 149 QSGACDGAALDPGFIGSALVPEEWVAEAEAEVAPEDFQEAIE----AVLEEEEDE 199


>gi|239747151 PREDICTED: hypothetical protein XP_002343928 [Homo
           sapiens]
          Length = 603

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 37  RDRLLNRYRQAGSSG-PGNSQNSFLVQEVMEEEW--NALQSVENCPEDLAQLEELIDM 91
           RD +L  Y    S G  G   +     E  E+ W  NA  S ++CPE L ++ EL+++
Sbjct: 53  RDVILENYHNLISVGYHGTKPDLIFKLEQGEDPWIINAKISRQSCPEMLLEVLELLEL 110


>gi|169216638 PREDICTED: similar to hCG1805148 [Homo sapiens]
          Length = 476

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 46  QAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQE 100
           Q+G+         F+   ++ EEW A    E  PED  +  E    AVLEE + E
Sbjct: 149 QSGACDGAALDPGFIGSALVPEEWVAEAEAEVAPEDFQEAIE----AVLEEEEDE 199


>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
           [Homo sapiens]
          Length = 912

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 16/66 (24%), Positives = 25/66 (37%)

Query: 15  LVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQS 74
           L  S  W+ A   R  +  R +R RL  + ++    G G        +  + +E   L  
Sbjct: 798 LPSSASWRCALWHRVWQGRRRARRRLQQQTKEGAGGGAGTRAGWLATEAQVTQELKGLSG 857

Query: 75  VENCPE 80
            E  PE
Sbjct: 858 GEERPE 863


>gi|4506501 regulatory factor X-associated protein [Homo sapiens]
          Length = 272

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 32  RMRNSRDRLLNRYRQ-AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELID 90
           ++  S D +L+  +Q  GS G   ++ + L Q + ++  + L+S E   + L + ++L++
Sbjct: 198 KLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLRSPE-VVQFLQKQQQLLN 256

Query: 91  MAVLEEIQQE 100
             VLE+ QQ+
Sbjct: 257 QQVLEQRQQQ 266


>gi|156523268 transcriptional adaptor 2 (ADA2 homolog, yeast)-beta
           [Homo sapiens]
          Length = 420

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 3   ESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAG 48
           + LR   R LY+ +    + + F     E+M  ++ R L RYR+ G
Sbjct: 253 KELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRELQRYRRNG 298


>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 523

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 31  ERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELID 90
           ER+R   +RL  + +  G           L QE  +EE   L   E     L ++EEL++
Sbjct: 318 ERLREQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQERLLERERL---LEEVEELLE 374

Query: 91  MAVLEEIQQELINQ 104
              L +  + L  Q
Sbjct: 375 QERLRQQDERLWQQ 388


>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
            sapiens]
          Length = 2715

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 43   RYRQAGSSGPGN-----SQNSFLVQEVMEEEWNAL-QSVENCPEDLAQLEELIDMAVLEE 96
            +++++G+  PGN       NS L + +   + +   +S+EN PE+L ++E   D   L +
Sbjct: 1617 QHKRSGTQAPGNLCCLYQTNSKLYESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPD 1676

Query: 97   IQQE 100
            +  E
Sbjct: 1677 VTCE 1680


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/47 (25%), Positives = 27/47 (57%)

Query: 30  LERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVE 76
           L+R+      LL++ +   +SG  N+Q + ++QE+++ +   +Q  E
Sbjct: 660 LDRIGKKNSILLHKVQHDLNSGVFNNQENAIIQEIVKYDREMVQQAE 706


>gi|48717285 hypothetical protein LOC389763 [Homo sapiens]
          Length = 1576

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 52  PGNSQNSFLVQEVMEEEWNALQSVE 76
           P N   S L  E+   EWN LQ V+
Sbjct: 609 PQNEARSLLPSEINHLEWNVLQKVQ 633


>gi|169646754 angiopoietin 2 isoform c precursor [Homo sapiens]
          Length = 444

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/49 (24%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 56  QNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDM--AVLEEIQQELI 102
           +NSFL ++V+  E   +  +++  E+  QL+ L+    +++EE++++++
Sbjct: 135 KNSFLEKKVLAMEDKHIIQLQSIKEEKDQLQVLVSKQNSIIEELEKKIV 183


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,155,800
Number of Sequences: 37866
Number of extensions: 162622
Number of successful extensions: 452
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 42
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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