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Search of human proteins with 237858705
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237858705 RPA interacting protein isoform d [Homo sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237858705 RPA interacting protein isoform d [Homo sapiens] 213 2e-56
gi|237858768 RPA interacting protein isoform f [Homo sapiens] 209 3e-55
gi|237858765 RPA interacting protein isoform e [Homo sapiens] 209 3e-55
gi|237858701 RPA interacting protein isoform c [Homo sapiens] 209 3e-55
gi|237858698 RPA interacting protein isoform a [Homo sapiens] 209 3e-55
gi|237858695 RPA interacting protein isoform b [Homo sapiens] 209 3e-55
gi|209862789 microtubule associated monoxygenase, calponin and L... 29 0.72
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 28 1.2
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom... 28 1.6
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo... 28 1.6
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho... 28 1.6
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho... 28 1.6
gi|27886524 nuclear factor of activated T-cells 5 isoform a [Hom... 28 1.6
gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens] 28 1.6
gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens] 28 1.6
gi|32454748 origin recognition complex subunit 4 [Homo sapiens] 28 2.1
gi|32454746 origin recognition complex subunit 4 [Homo sapiens] 28 2.1
gi|32454750 origin recognition complex subunit 4 [Homo sapiens] 28 2.1
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 28 2.1
gi|169216384 PREDICTED: similar to hCG1805148 [Homo sapiens] 27 2.7
gi|239747151 PREDICTED: hypothetical protein XP_002343928 [Homo ... 27 2.7
gi|169216638 PREDICTED: similar to hCG1805148 [Homo sapiens] 27 2.7
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 27 3.6
gi|4506501 regulatory factor X-associated protein [Homo sapiens] 27 3.6
gi|156523268 transcriptional adaptor 2 (ADA2 homolog, yeast)-bet... 27 3.6
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 27 4.6
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 26 6.1
gi|48717285 hypothetical protein LOC389763 [Homo sapiens] 26 6.1
gi|169646754 angiopoietin 2 isoform c precursor [Homo sapiens] 26 6.1
>gi|237858705 RPA interacting protein isoform d [Homo sapiens]
Length = 106
Score = 213 bits (543), Expect = 2e-56
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQGL 106
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQGL
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQGL 106
>gi|237858768 RPA interacting protein isoform f [Homo sapiens]
Length = 106
Score = 209 bits (533), Expect = 3e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
>gi|237858765 RPA interacting protein isoform e [Homo sapiens]
Length = 148
Score = 209 bits (533), Expect = 3e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
>gi|237858701 RPA interacting protein isoform c [Homo sapiens]
Length = 172
Score = 209 bits (533), Expect = 3e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
>gi|237858698 RPA interacting protein isoform a [Homo sapiens]
Length = 231
Score = 209 bits (533), Expect = 3e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
>gi|237858695 RPA interacting protein isoform b [Homo sapiens]
Length = 219
Score = 209 bits (533), Expect = 3e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 29.3 bits (64), Expect = 0.72
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 16 VGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEE 68
+G PWKEA R L + ++ + + S GPGN + +E EEE
Sbjct: 958 LGGVPWKEAVRIHALLKGKSEEE-----LEASKSFGPGNEEEEEEEEEYEEEE 1005
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 3 ESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQ 62
E R+PR L L+ P A R L RD+ L R+ +S+ ++
Sbjct: 439 ERTRAPRHHLGHLLSVPDESSALEDRGLASSPEDRDQGLFLLRK-------DSERRAILY 491
Query: 63 EVMEEEWNALQSVENCPEDLAQLEELIDMAV 93
+++ EE N Q N E +AQ E + ++V
Sbjct: 492 KILWEEQN--QVASNLQECVAQSSEELHLSV 520
>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 35 NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
NS +L N +Q GS+ G+S + LVQ+V+E + + + P+ ++E
Sbjct: 690 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 749
Query: 89 IDMAVLEEIQQ 99
+ + +++ Q
Sbjct: 750 LSADIFQQVSQ 760
>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
sapiens]
Length = 1531
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 35 NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
NS +L N +Q GS+ G+S + LVQ+V+E + + + P+ ++E
Sbjct: 766 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 825
Query: 89 IDMAVLEEIQQ 99
+ + +++ Q
Sbjct: 826 LSADIFQQVSQ 836
>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
sapiens]
Length = 1548
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 35 NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
NS +L N +Q GS+ G+S + LVQ+V+E + + + P+ ++E
Sbjct: 783 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 842
Query: 89 IDMAVLEEIQQ 99
+ + +++ Q
Sbjct: 843 LSADIFQQVSQ 853
>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
sapiens]
Length = 1549
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 35 NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
NS +L N +Q GS+ G+S + LVQ+V+E + + + P+ ++E
Sbjct: 784 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 843
Query: 89 IDMAVLEEIQQ 99
+ + +++ Q
Sbjct: 844 LSADIFQQVSQ 854
>gi|27886524 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 35 NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
NS +L N +Q GS+ G+S + LVQ+V+E + + + P+ ++E
Sbjct: 690 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 749
Query: 89 IDMAVLEEIQQ 99
+ + +++ Q
Sbjct: 750 LSADIFQQVSQ 760
>gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]
Length = 965
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 62 QEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEE 96
QEV+++E + S + L +LE+LID ++ E
Sbjct: 311 QEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAE 345
>gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]
Length = 977
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 62 QEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEE 96
QEV+++E + S + L +LE+LID ++ E
Sbjct: 323 QEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAE 357
>gi|32454748 origin recognition complex subunit 4 [Homo sapiens]
Length = 436
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 53 GNSQNSFLVQEVMEEE---WNALQSVENCPEDLAQ 84
GNSQ + + +++ + NALQ NCP D+ Q
Sbjct: 393 GNSQREYQLMKLLLDNTQIMNALQKYPNCPTDVRQ 427
>gi|32454746 origin recognition complex subunit 4 [Homo sapiens]
Length = 436
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 53 GNSQNSFLVQEVMEEE---WNALQSVENCPEDLAQ 84
GNSQ + + +++ + NALQ NCP D+ Q
Sbjct: 393 GNSQREYQLMKLLLDNTQIMNALQKYPNCPTDVRQ 427
>gi|32454750 origin recognition complex subunit 4 [Homo sapiens]
Length = 436
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 53 GNSQNSFLVQEVMEEE---WNALQSVENCPEDLAQ 84
GNSQ + + +++ + NALQ NCP D+ Q
Sbjct: 393 GNSQREYQLMKLLLDNTQIMNALQKYPNCPTDVRQ 427
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 27.7 bits (60), Expect = 2.1
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 3 ESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQ 62
E+ R+PR + + +P W++A R R R R+RL + ++ ++
Sbjct: 282 EAERAPREEQQRSLEAPGWEDAER-----REREERERLEAEEERRRLQAQAQAEERRRLE 336
Query: 63 E--VMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQG 105
E +EE + C E+L + EE E QQE QG
Sbjct: 337 EDARLEERRRQEEEEGRCAEELKRQEEEEAEGWEELEQQEAEVQG 381
>gi|169216384 PREDICTED: similar to hCG1805148 [Homo sapiens]
Length = 476
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 46 QAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQE 100
Q+G+ F+ ++ EEW A E PED + E AVLEE + E
Sbjct: 149 QSGACDGAALDPGFIGSALVPEEWVAEAEAEVAPEDFQEAIE----AVLEEEEDE 199
>gi|239747151 PREDICTED: hypothetical protein XP_002343928 [Homo
sapiens]
Length = 603
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 37 RDRLLNRYRQAGSSG-PGNSQNSFLVQEVMEEEW--NALQSVENCPEDLAQLEELIDM 91
RD +L Y S G G + E E+ W NA S ++CPE L ++ EL+++
Sbjct: 53 RDVILENYHNLISVGYHGTKPDLIFKLEQGEDPWIINAKISRQSCPEMLLEVLELLEL 110
>gi|169216638 PREDICTED: similar to hCG1805148 [Homo sapiens]
Length = 476
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 46 QAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQE 100
Q+G+ F+ ++ EEW A E PED + E AVLEE + E
Sbjct: 149 QSGACDGAALDPGFIGSALVPEEWVAEAEAEVAPEDFQEAIE----AVLEEEEDE 199
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 26.9 bits (58), Expect = 3.6
Identities = 16/66 (24%), Positives = 25/66 (37%)
Query: 15 LVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQS 74
L S W+ A R + R +R RL + ++ G G + + +E L
Sbjct: 798 LPSSASWRCALWHRVWQGRRRARRRLQQQTKEGAGGGAGTRAGWLATEAQVTQELKGLSG 857
Query: 75 VENCPE 80
E PE
Sbjct: 858 GEERPE 863
>gi|4506501 regulatory factor X-associated protein [Homo sapiens]
Length = 272
Score = 26.9 bits (58), Expect = 3.6
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 32 RMRNSRDRLLNRYRQ-AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELID 90
++ S D +L+ +Q GS G ++ + L Q + ++ + L+S E + L + ++L++
Sbjct: 198 KLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLRSPE-VVQFLQKQQQLLN 256
Query: 91 MAVLEEIQQE 100
VLE+ QQ+
Sbjct: 257 QQVLEQRQQQ 266
>gi|156523268 transcriptional adaptor 2 (ADA2 homolog, yeast)-beta
[Homo sapiens]
Length = 420
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 3 ESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAG 48
+ LR R LY+ + + + F E+M ++ R L RYR+ G
Sbjct: 253 KELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRELQRYRRNG 298
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 31 ERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELID 90
ER+R +RL + + G L QE +EE L E L ++EEL++
Sbjct: 318 ERLREQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQERLLERERL---LEEVEELLE 374
Query: 91 MAVLEEIQQELINQ 104
L + + L Q
Sbjct: 375 QERLRQQDERLWQQ 388
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 43 RYRQAGSSGPGN-----SQNSFLVQEVMEEEWNAL-QSVENCPEDLAQLEELIDMAVLEE 96
+++++G+ PGN NS L + + + + +S+EN PE+L ++E D L +
Sbjct: 1617 QHKRSGTQAPGNLCCLYQTNSKLYESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPD 1676
Query: 97 IQQE 100
+ E
Sbjct: 1677 VTCE 1680
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 30 LERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVE 76
L+R+ LL++ + +SG N+Q + ++QE+++ + +Q E
Sbjct: 660 LDRIGKKNSILLHKVQHDLNSGVFNNQENAIIQEIVKYDREMVQQAE 706
>gi|48717285 hypothetical protein LOC389763 [Homo sapiens]
Length = 1576
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 52 PGNSQNSFLVQEVMEEEWNALQSVE 76
P N S L E+ EWN LQ V+
Sbjct: 609 PQNEARSLLPSEINHLEWNVLQKVQ 633
>gi|169646754 angiopoietin 2 isoform c precursor [Homo sapiens]
Length = 444
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/49 (24%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 56 QNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDM--AVLEEIQQELI 102
+NSFL ++V+ E + +++ E+ QL+ L+ +++EE++++++
Sbjct: 135 KNSFLEKKVLAMEDKHIIQLQSIKEEKDQLQVLVSKQNSIIEELEKKIV 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,155,800
Number of Sequences: 37866
Number of extensions: 162622
Number of successful extensions: 452
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 42
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.