Guide to the Human Genome
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Name: RPAIN Sequence: fasta or formatted (106aa) NCBI GI: 237858705
Description:

RPA interacting protein isoform d

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [219aa] RPA interacting protein isoform b
alt prot [231aa] RPA interacting protein isoform a
alt prot [172aa] RPA interacting protein isoform c
alt prot [148aa] RPA interacting protein isoform e
alt prot [106aa] RPA interacting protein isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          6           1
 C cysteine            1.9          2           1
 D aspartate           2.8          3           1
 E glutamate          13.2         14           3
 F phenylalanine       1.9          2           1
 G glycine             4.7          5           1
 H histidine           0.0          0           0
 I isoleucine          2.8          3           1
 K lysine              1.9          2           1
 L leucine            13.2         14           2
 M methionine          3.8          4           1
 N asparagine          6.6          7           1
 P proline             4.7          5           2
 Q glutamine           8.5          9           2
 R arginine           10.4         11           2
 S serine              9.4         10           2
 T threonine           0.0          0           0
 V valine              4.7          5           1
 W tryptophan          1.9          2           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RPA interacting protein isoform d 
RPAIN                 0.979   RPA interacting protein isoform f 
RPAIN                 0.979   RPA interacting protein isoform e 
RPAIN                 0.979   RPA interacting protein isoform c 
RPAIN                 0.979   RPA interacting protein isoform a 
RPAIN                 0.979   RPA interacting protein isoform b 
MICAL3                0.021   microtubule associated monoxygenase, calponin and L...
MAP3K15               0.016   mitogen-activated protein kinase kinase kinase 15 [...
NFAT5                 0.016   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.016   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.016   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.016   nuclear factor of activated T-cells 5 isoform b [Ho...
NFAT5                 0.016   nuclear factor of activated T-cells 5 isoform a [Hom...
VPS54                 0.016   vacuolar protein sorting 54 isoform 2 
VPS54                 0.016   vacuolar protein sorting 54 isoform 1 
ORC4L                 0.016   origin recognition complex subunit 4 
ORC4L                 0.016   origin recognition complex subunit 4 
ORC4L                 0.016   origin recognition complex subunit 4 
KIAA1211              0.016   hypothetical protein LOC57482 
LOC100129700          0.011   PREDICTED: similar to hCG1805148 
LOC100287515          0.011   PREDICTED: hypothetical protein XP_002343928 
LOC100129700          0.011   PREDICTED: similar to hCG1805148 
TUT1                  0.011   terminal uridylyl transferase 1, U6 snRNA-specific ...
RFXAP                 0.011   regulatory factor X-associated protein 
TADA2B                0.011   transcriptional adaptor 2 (ADA2 homolog, yeast)-bet...
LOC100133220          0.011   PREDICTED: hypothetical protein 
CHD6                  0.011   chromodomain helicase DNA binding protein 6 
HCN2                  0.005   hyperpolarization activated cyclic nucleotide-gated...
FLJ46321              0.005   hypothetical protein LOC389763 
ANGPT2                0.005   angiopoietin 2 isoform c precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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