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Search of human proteins with 116174740
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116174740 chromosome 11 open reading frame 17 [Homo sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens] 427 e-120
gi|116174740 chromosome 11 open reading frame 17 [Homo sapiens] 427 e-120
gi|63055059 SH3 and PX domains 2B [Homo sapiens] 33 0.13
gi|197383784 zinc finger protein 213 [Homo sapiens] 33 0.18
gi|32698678 zinc finger protein 213 [Homo sapiens] 33 0.18
gi|5032031 RNA binding motif protein 5 [Homo sapiens] 31 0.87
gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 30 1.1
gi|4507963 zinc finger protein 37 homolog [Homo sapiens] 30 1.5
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 30 1.9
gi|239747893 PREDICTED: zinc finger protein 806 [Homo sapiens] 29 2.5
gi|22035600 mitogen-activated protein kinase kinase kinase kinas... 29 2.5
gi|110349775 zinc finger protein 12 isoform b [Homo sapiens] 29 3.3
gi|66348108 zinc finger protein 12 isoform a [Homo sapiens] 29 3.3
gi|51172610 Rho guanine nucleotide exchange factor (GEF) 5-like ... 28 4.3
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 28 4.3
gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isofo... 28 5.6
gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isofor... 28 5.6
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 28 5.6
gi|194018469 zinc finger protein 546 [Homo sapiens] 28 5.6
gi|57863253 zinc finger protein 500 [Homo sapiens] 28 7.4
gi|14249570 hypothetical protein LOC84934 [Homo sapiens] 28 7.4
gi|110349786 Alstrom syndrome 1 [Homo sapiens] 27 9.6
gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo s... 27 9.6
gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo sa... 27 9.6
gi|4507987 zinc finger protein 136 [Homo sapiens] 27 9.6
>gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens]
Length = 210
Score = 427 bits (1097), Expect = e-120
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60
MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
Sbjct: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60
Query: 61 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120
KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH
Sbjct: 61 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120
Query: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180
RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
Sbjct: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180
Query: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210
SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
Sbjct: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210
>gi|116174740 chromosome 11 open reading frame 17 [Homo sapiens]
Length = 210
Score = 427 bits (1097), Expect = e-120
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60
MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
Sbjct: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60
Query: 61 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120
KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH
Sbjct: 61 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120
Query: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180
RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
Sbjct: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180
Query: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210
SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
Sbjct: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210
>gi|63055059 SH3 and PX domains 2B [Homo sapiens]
Length = 911
Score = 33.5 bits (75), Expect = 0.13
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 35 RAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMD 94
+ + A RP +++ P + Q A + V+P R P S+S R + E
Sbjct: 722 KEISCRAPPRPAKTTDPVSKSVP-VPLQEAPQQRPVVPPRRPPPPKKTSSSSRPLPEVR- 779
Query: 95 YTSSQCGKYYS-SVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQI 153
QC + S + P G A V ++K + +G GQ R K SLGP G+ +I
Sbjct: 780 --GPQCEGHESRAAPTPGRALLV----PPKAKPFLSNSLG-GQDDTRGKGSLGPWGTGKI 832
Query: 154 SEH---APEASQP-AENISKDLYIEV 175
E+ A AS P A+ + LY+ V
Sbjct: 833 GENREKAAAASVPNADGLKDSLYVAV 858
>gi|197383784 zinc finger protein 213 [Homo sapiens]
Length = 459
Score = 33.1 bits (74), Expect = 0.18
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 55 EAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGAT 114
EA E +P A V+ G R RPPT FR +A ++ QCGK + + A
Sbjct: 278 EAWESENRPRAALGPVV-GARRGRPPTRRRQFRDLAAEKPHSCGQCGKRFRWGSDL--AR 334
Query: 115 HVYRYHRGESKLHMC 129
H R H GE K H C
Sbjct: 335 H-QRTHTGE-KPHKC 347
>gi|32698678 zinc finger protein 213 [Homo sapiens]
Length = 459
Score = 33.1 bits (74), Expect = 0.18
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 55 EAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGAT 114
EA E +P A V+ G R RPPT FR +A ++ QCGK + + A
Sbjct: 278 EAWESENRPRAALGPVV-GARRGRPPTRRRQFRDLAAEKPHSCGQCGKRFRWGSDL--AR 334
Query: 115 HVYRYHRGESKLHMC 129
H R H GE K H C
Sbjct: 335 H-QRTHTGE-KPHKC 347
>gi|5032031 RNA binding motif protein 5 [Homo sapiens]
Length = 815
Score = 30.8 bits (68), Expect = 0.87
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 63 PAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYY--SSVPEEGGATHVYRYH 120
PAA P V+PG + P T + + + + Y G YY +S T Y Y
Sbjct: 441 PAASPTGVVPGTKYAVPDTSTYQYDESSGY--YYDPTTGLYYDPNSQYYYNSLTQQYLYW 498
Query: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDL 171
GE + + + + +++ L P + + P+ S+ A+ I+KD+
Sbjct: 499 DGEKETY----VPAAESSSHQQSGLPPAKEGKEKKEKPK-SKTAQQIAKDM 544
>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
Length = 1646
Score = 30.4 bits (67), Expect = 1.1
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 29 LERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRT 88
++ K++ +DW A EA L Q L G+ EE L SF T
Sbjct: 595 VQNCKKQLLDWKAFTE---------EEAETLVNQFFFQMVGALQGKVEEDLELLDKSFET 645
Query: 89 MAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSL 145
+A+ ++ SS KY+ V ++ H+ E L L++ + R+K SL
Sbjct: 646 LADQTEWQSSHLFKYFQEV------VQLWEAHQSE-LLVQELELEKRMEQHRQKHSL 695
>gi|4507963 zinc finger protein 37 homolog [Homo sapiens]
Length = 630
Score = 30.0 bits (66), Expect = 1.5
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 69 RVLPGEREERPPTLSASF---RTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESK 125
++ GE+ E+ P+LS+S + A Y +QCGK S + G R H GE K
Sbjct: 264 KIQTGEKHEKSPSLSSSTKHEKPQACVKPYECNQCGKVLS---HKQGLIDHQRVHTGE-K 319
Query: 126 LHMCLDIG 133
+ C + G
Sbjct: 320 PYECNECG 327
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 29.6 bits (65), Expect = 1.9
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60
+DNC+ A + V R+ R VL +A RR VD LE G HL
Sbjct: 635 IDNCMKYNARDTVFYRAAVRLRDQGGVVLRQA-RREVDSIGLEEASGM---------HLP 684
Query: 61 KQPAAGPQRVLPGEREER 78
++PAA P+R E +R
Sbjct: 685 ERPAAAPRRPFSWEDVDR 702
>gi|239747893 PREDICTED: zinc finger protein 806 [Homo sapiens]
Length = 589
Score = 29.3 bits (64), Expect = 2.5
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 73 GEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHV-YRYHRGESKLHMCLD 131
G+R E+ L R Y SS+CGK +SS V +R+H GE K + C +
Sbjct: 377 GKRFEQSSNLLIHQRVHTGGKPYKSSECGKCFSS----SSVLQVHWRFHTGE-KPYRCGE 431
Query: 132 IGNG 135
G G
Sbjct: 432 CGKG 435
>gi|22035600 mitogen-activated protein kinase kinase kinase kinase 2
[Homo sapiens]
Length = 820
Score = 29.3 bits (64), Expect = 2.5
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 17 SLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHL--------EKQPAAGPQ 68
SL +S + ALE R A ++ L+ P MG + R AP L ++P + P
Sbjct: 367 SLLQSVQEALEERSLTIRSASEFQELDSPDDTMGTIKR-APFLGPLPTDPPAEEPLSSPP 425
Query: 69 RVL--PGEREERPPTLSASFRTMAEFMDYTSSQC 100
L P P L ++ TM + D S C
Sbjct: 426 GTLPPPPSGPNSSPLLPTAWATMKQREDPERSSC 459
>gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]
Length = 659
Score = 28.9 bits (63), Expect = 3.3
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 78 RPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIG 133
R TL+ RT Y ++CGK++S + T YR H GE K + C + G
Sbjct: 382 RKSTLTTHLRTHTGEKPYECNECGKFFSRL---SYLTVHYRTHSGE-KPYECNECG 433
>gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]
Length = 697
Score = 28.9 bits (63), Expect = 3.3
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 78 RPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIG 133
R TL+ RT Y ++CGK++S + T YR H GE K + C + G
Sbjct: 420 RKSTLTTHLRTHTGEKPYECNECGKFFSRL---SYLTVHYRTHSGE-KPYECNECG 471
>gi|51172610 Rho guanine nucleotide exchange factor (GEF) 5-like
[Homo sapiens]
Length = 484
Score = 28.5 bits (62), Expect = 4.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 154 SEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQS 203
SEH A ++ S++ +E +PG S+T+GS ++ + +SGQ+
Sbjct: 131 SEHLDMAPFSSDLGSEEEEVEFWPGLTSLTLGSGQAEEEEETSSDNSGQT 180
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 28.5 bits (62), Expect = 4.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 154 SEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQS 203
SEH A ++ S++ +E +PG S+T+GS ++ + +SGQ+
Sbjct: 131 SEHLDMAPFSSDLGSEEEEVEFWPGLTSLTLGSGQAEEEEETSSDNSGQT 180
>gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isoform
b [Homo sapiens]
Length = 1173
Score = 28.1 bits (61), Expect = 5.6
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 6 AAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAA 65
A A L + + Q RL E E ++R H LER + + RE LE
Sbjct: 896 AGARLQEREGEARQLRERLEQERAELERQRQAYQHDLERLREAQRAVERERERLELLRRL 955
Query: 66 GPQRVLPGE------REERPPTLSASF 86
Q PG E +PP+ SF
Sbjct: 956 KKQNTAPGALPPDTLAEAQPPSHPPSF 982
>gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isoform a
[Homo sapiens]
Length = 1015
Score = 28.1 bits (61), Expect = 5.6
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 6 AAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAA 65
A A L + + Q RL E E ++R H LER + + RE LE
Sbjct: 738 AGARLQEREGEARQLRERLEQERAELERQRQAYQHDLERLREAQRAVERERERLELLRRL 797
Query: 66 GPQRVLPGE------REERPPTLSASF 86
Q PG E +PP+ SF
Sbjct: 798 KKQNTAPGALPPDTLAEAQPPSHPPSF 824
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 28.1 bits (61), Expect = 5.6
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 14 DRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVL 71
D R +A L L RA+RR++ A + G L +E P E + P+R L
Sbjct: 69 DSRVTPATALLLLSHRGRAQRRSIQAAAAQEQSTGRGCLGKEPPSQESWTRSDPRRCL 126
>gi|194018469 zinc finger protein 546 [Homo sapiens]
Length = 836
Score = 28.1 bits (61), Expect = 5.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 82 LSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQR 137
L+ RT + Y +CGK +SS T YR H GE K ++C + G R
Sbjct: 484 LTLHLRTHTGEIPYECKECGKTFSS---RYHLTQHYRIHTGE-KPYICNECGKAFR 535
>gi|57863253 zinc finger protein 500 [Homo sapiens]
Length = 480
Score = 27.7 bits (60), Expect = 7.4
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 40 HALERPKGCM----------GVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTM 89
H ERP C+ + H ++P P+ G+R + +L RT
Sbjct: 347 HTGERPYKCLVCGKGFSDRSNFSTHQRVHTGEKPYPCPEC---GKRFSQSSSLVIHRRTH 403
Query: 90 AEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRK-----DRKKTS 144
+ Y +QCGK +++ + H R H GE K + C G G R+ ++T
Sbjct: 404 SGERPYACTQCGKRFNN--SSHFSAH-RRTHTGE-KPYTCPACGRGFRRGTDLHKHQRTH 459
Query: 145 LGPGGSYQISEHAP 158
+G G + AP
Sbjct: 460 MGAGSLPTLQPVAP 473
>gi|14249570 hypothetical protein LOC84934 [Homo sapiens]
Length = 269
Score = 27.7 bits (60), Expect = 7.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 30 ERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPG 73
+ AK RA+ W P+G REAP P AGP + PG
Sbjct: 133 DAAKLRALLWTPPPTPRGSHSPRPREAPLRAIHP-AGPSKTEPG 175
>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
Length = 4169
Score = 27.3 bits (59), Expect = 9.6
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 46 KGCMGVLAREAPHLEKQP----AAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSS 98
KGC L E P L++ P +AGP + G + P + A ++ +D +S
Sbjct: 2585 KGCFRTLTSEHPQLDRHPCAFRSAGPSEMTRG--RQNPSSCRAKHVNLSASLDQNNS 2639
>gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo
sapiens]
Length = 422
Score = 27.3 bits (59), Expect = 9.6
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 57 PHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGK--YYSSVPEEGGAT 114
P++ P A PQ + P L AS AE + + G Y + P EG +
Sbjct: 193 PYVPGAPGALPQGAFMSQGARAVPVLQASLAMPAEGISQPAPARGDFLYATPTPPEGALS 252
Query: 115 HV----YRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQP 163
H + H G+S R+DR+ G G + + P ++P
Sbjct: 253 HPQAPRWPAHPGKS------------REDRELQLDGLPGPCTVGQPGPAQARP 293
>gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo
sapiens]
Length = 422
Score = 27.3 bits (59), Expect = 9.6
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 57 PHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGK--YYSSVPEEGGAT 114
P++ P A PQ + P L AS AE + + G Y + P EG +
Sbjct: 193 PYVPGAPGALPQGAFMSQGARAVPVLQASLAMPAEGISQPAPARGDFLYATPTPPEGALS 252
Query: 115 HV----YRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQP 163
H + H G+S R+DR+ G G + + P ++P
Sbjct: 253 HPQAPRWPAHPGKS------------REDRELQLDGLPGPCTVGQPGPAQARP 293
>gi|4507987 zinc finger protein 136 [Homo sapiens]
Length = 540
Score = 27.3 bits (59), Expect = 9.6
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 80 PTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKD 139
PTL RT Y QCGK +S +P R H GE K +C G R
Sbjct: 293 PTLRIHERTHTGEKPYECKQCGKAFSYLP---SLRLHERIHTGE-KPFVCKQCGKAFRS- 347
Query: 140 RKKTSLGPGGSYQISEHAPEASQPAE 165
++QI E +P E
Sbjct: 348 --------ASTFQIHERTHTGEKPYE 365
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,921,175
Number of Sequences: 37866
Number of extensions: 439292
Number of successful extensions: 1020
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 29
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.