Search of human proteins with 22907025

Search of human proteins with 22907025

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3B [Homo sapiens]
         (382 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic poly...   830   0.0  
gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic pol...   444   e-125
gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic poly...   443   e-124
gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic poly...   435   e-122
gi|21955158 phorbolin 1 [Homo sapiens]                                358   3e-99
gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic poly...   210   2e-54
gi|10190700 activation-induced cytidine deaminase [Homo sapiens]      139   3e-33
gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic poly...    97   2e-20
gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp...    94   2e-19
gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]        91   2e-18
gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic poly...    69   7e-12
gi|44888831 apolipoprotein B [Homo sapiens]                            32   1.2  
gi|156151402 hypothetical protein LOC80183 [Homo sapiens]              30   4.7  
gi|187936961 transmembrane protein 129 isoform a [Homo sapiens]        29   6.2  

>gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3B [Homo sapiens]
          Length = 382

 Score =  830 bits (2144), Expect = 0.0
 Identities = 382/382 (100%), Positives = 382/382 (100%)

Query: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 60
           MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
Sbjct: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 60

Query: 61  FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA 120
           FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
Sbjct: 61  FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA 120

Query: 121 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF 180
           ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
Sbjct: 121 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF 180

Query: 181 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN 240
           LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
Sbjct: 181 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN 240

Query: 241 EAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN 300
           EAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN
Sbjct: 241 EAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN 300

Query: 301 THVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWD 360
           THVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWD
Sbjct: 301 THVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWD 360

Query: 361 GLEEHSQALSGRLRAILQNQGN 382
           GLEEHSQALSGRLRAILQNQGN
Sbjct: 361 GLEEHSQALSGRLRAILQNQGN 382


>gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3D [Homo sapiens]
          Length = 386

 Score =  444 bits (1143), Expect = e-125
 Identities = 233/395 (58%), Positives = 269/395 (68%), Gaps = 26/395 (6%)

Query: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRG--- 57
           MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRG   
Sbjct: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL 60

Query: 58  ---------QVYFKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL 108
                    +VYF+ + HAEMCFLSWFCGN+LPA + FQITWFVSW PC  CV K+ +FL
Sbjct: 61  PKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFL 120

Query: 109 SEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQF 168
           +EHPNVTLTISAARLYYY +RD+R  L RL +AGARV IMDYE+FAYCWENFV NEGQ F
Sbjct: 121 AEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPF 180

Query: 169 MPWYKFDENYAFLHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDN 225
           MPWYKFD+NYA LHRTLKEILR  M+   P  F F+F N      R +++LC+ +E   +
Sbjct: 181 MPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKH 240

Query: 226 GTWVLMDQHMGFLCNEA-KNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPC 284
            + V   +  G   N+      C     HAE  FL       L P   Y VTW+ SWSPC
Sbjct: 241 HSAVF--RKRGVFRNQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPC 293

Query: 285 FSWGCAGEVRAFLQENTHVRLRIFAARI-YDYDPLYKEALQMLRDAGAQVSIMTYDEFEY 343
               CAGEV  FL  +++V L IF AR+ Y +D  Y+E L  L   GA V IM Y +F  
Sbjct: 294 PE--CAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVS 351

Query: 344 CWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQ 378
           CW  FVY    PF+PW GL+ + + L  RLR ILQ
Sbjct: 352 CWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ 386



 Score =  119 bits (299), Expect = 3e-27
 Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 9/191 (4%)

Query: 196 DTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHM---GFLCNEAKNLLCGFYGR 252
           DTF  NF N+P++  R  T+LCYEV+     + +L D  +     L     N     Y R
Sbjct: 15  DTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFR 74

Query: 253 ---HAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 309
              HAE+ FL      +L   + +++TWF+SW+PC    C  +V  FL E+ +V L I A
Sbjct: 75  FENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLP--CVVKVTKFLAEHPNVTLTISA 132

Query: 310 ARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQA 368
           AR+Y Y D  ++  L  L  AGA+V IM Y++F YCW+ FV  +G PF PW   +++  +
Sbjct: 133 ARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYAS 192

Query: 369 LSGRLRAILQN 379
           L   L+ IL+N
Sbjct: 193 LHRTLKEILRN 203


>gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3F isoform a [Homo sapiens]
          Length = 373

 Score =  443 bits (1139), Expect = e-124
 Identities = 228/383 (59%), Positives = 266/383 (69%), Gaps = 15/383 (3%)

Query: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 60
           M P  RN +ERMYRDTF  NF N PIL  R+  WLCYEVK K G S    D  +FRGQVY
Sbjct: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVY 59

Query: 61  FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA 120
            +P++HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL+EHPNVTLTISA
Sbjct: 60  SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA 119

Query: 121 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF 180
           ARLYYYWERDYRRALCRLSQAGARV IMD EEFAYCWENFVY+EGQ FMPWYKFD+NYAF
Sbjct: 120 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF 179

Query: 181 LHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGF 237
           LHRTLKEILR  M+   P  F F+F N      R +++LC+ +E + + + V   +  G 
Sbjct: 180 LHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKR--GV 237

Query: 238 LCNEA-KNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAF 296
             N+      C     HAE  FL       L P   Y VTW+ SWSPC    CAGEV  F
Sbjct: 238 FRNQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEF 290

Query: 297 LQENTHVRLRIFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP 355
           L  +++V L IF AR+Y + D  Y+E L+ L   GA V IM Y +F+YCW+ FVY    P
Sbjct: 291 LARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEP 350

Query: 356 FQPWDGLEEHSQALSGRLRAILQ 378
           F+PW GL+ +   L  +L+ IL+
Sbjct: 351 FKPWKGLKYNFLFLDSKLQEILE 373



 Score =  122 bits (306), Expect = 5e-28
 Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 16/188 (8%)

Query: 196 DTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGFYGR--- 252
           DTF++NF N P++ RR   +LCYEV+        L          +AK      Y +   
Sbjct: 15  DTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRL----------DAKIFRGQVYSQPEH 64

Query: 253 HAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARI 312
           HAE+ FL      QL   + +++TWF+SW+PC    C  ++  FL E+ +V L I AAR+
Sbjct: 65  HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPD--CVAKLAEFLAEHPNVTLTISAARL 122

Query: 313 YDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSG 371
           Y Y +  Y+ AL  L  AGA+V IM  +EF YCW+ FVY +G PF PW   +++   L  
Sbjct: 123 YYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHR 182

Query: 372 RLRAILQN 379
            L+ IL+N
Sbjct: 183 TLKEILRN 190


>gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3G [Homo sapiens]
          Length = 384

 Score =  435 bits (1118), Expect = e-122
 Identities = 219/387 (56%), Positives = 266/387 (68%), Gaps = 8/387 (2%)

Query: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 60
           M P  RN +ERMYRDTF  NF N PIL  R+  WLCYEVK K G S    D  +FRGQVY
Sbjct: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRGQVY 59

Query: 61  FKPQYHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS 119
            + +YH EM F  WF    +L   + +++TW++SW+PC  C   +A FL+E P VTLTI 
Sbjct: 60  SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF 119

Query: 120 AARLYYYWERDYRRALCRLSQA--GARVT--IMDYEEFAYCWENFVYNEGQQFMPWYKFD 175
            ARLYY+W+ DY+ AL  L Q   G R T  IM+Y+EF +CW  FVY++ + F PW    
Sbjct: 120 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP 179

Query: 176 ENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHM 235
           + Y  LH  L EILR+ MDP TFTFNFNN+P V  R +TYLCYEVER+ N TWVL++Q  
Sbjct: 180 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR 239

Query: 236 GFLCNEAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRA 295
           GFLCN+A +      GRHAEL FLD++P  +LD  Q YRVT F SWSPCFS  CA E+  
Sbjct: 240 GFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAK 297

Query: 296 FLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP 355
           F+ +N HV L IF ARIYD     +E L+ L +AGA++SIMTY EF++CWDTFV  QGCP
Sbjct: 298 FISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCP 357

Query: 356 FQPWDGLEEHSQALSGRLRAILQNQGN 382
           FQPWDGL+EHSQ LSGRLRAILQNQ N
Sbjct: 358 FQPWDGLDEHSQDLSGRLRAILQNQEN 384


>gi|21955158 phorbolin 1 [Homo sapiens]
          Length = 199

 Score =  358 bits (920), Expect = 3e-99
 Identities = 171/193 (88%), Positives = 178/193 (92%), Gaps = 3/193 (1%)

Query: 190 RYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGF 249
           R+LMDP  FT NFNN    + R +TYLCYEVERLDNGT V MDQH GFL N+AKNLLCGF
Sbjct: 10  RHLMDPHIFTSNFNNG---IGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66

Query: 250 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 309
           YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA
Sbjct: 67  YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126

Query: 310 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQAL 369
           ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEF++CWDTFV  QGCPFQPWDGL+EHSQAL
Sbjct: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186

Query: 370 SGRLRAILQNQGN 382
           SGRLRAILQNQGN
Sbjct: 187 SGRLRAILQNQGN 199



 Score =  109 bits (273), Expect = 4e-24
 Identities = 70/193 (36%), Positives = 103/193 (53%), Gaps = 16/193 (8%)

Query: 8   PMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVYFKPQY-- 65
           P   M    F  NF N     GR  T+LCYEV+     +++  D    RG ++ + +   
Sbjct: 9   PRHLMDPHIFTSNFNNG---IGRHKTYLCYEVERLDNGTSVKMDQ--HRGFLHNQAKNLL 63

Query: 66  ------HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPD--CVAKLAEFLSEHPNVTLT 117
                 HAE+ FL      QL   + +++TWF+SW+PC    C  ++  FL E+ +V L 
Sbjct: 64  CGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLR 123

Query: 118 ISAARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDEN 177
           I AAR+Y Y +  Y+ AL  L  AGA+V+IM Y+EF +CW+ FV ++G  F PW   DE+
Sbjct: 124 IFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEH 182

Query: 178 YAFLHRTLKEILR 190
              L   L+ IL+
Sbjct: 183 SQALSGRLRAILQ 195


>gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3C [Homo sapiens]
          Length = 190

 Score =  210 bits (534), Expect = 2e-54
 Identities = 99/190 (52%), Positives = 123/190 (64%)

Query: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 60
           MNPQIRNPM+ MY  TFY  F+N      R+ TWLC+ V+  + RS + W TGVFR QV 
Sbjct: 1   MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD 60

Query: 61  FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA 120
            +   HAE CFLSWFC + L     +Q+TW+ SW+PCPDC  ++AEFL+ H NV LTI  
Sbjct: 61  SETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFT 120

Query: 121 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF 180
           ARLYY+    Y+  L  LSQ G  V IMDYE+F YCWENFVYN+ + F PW     N+  
Sbjct: 121 ARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRL 180

Query: 181 LHRTLKEILR 190
           L R L+E L+
Sbjct: 181 LKRRLRESLQ 190



 Score =  125 bits (314), Expect = 6e-29
 Identities = 74/187 (39%), Positives = 99/187 (52%), Gaps = 9/187 (4%)

Query: 193 MDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGFYGR 252
           M P TF F F N      R +T+LC+ VE +   + V       +     +N +      
Sbjct: 12  MYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVV------SWKTGVFRNQVDSETHC 65

Query: 253 HAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARI 312
           HAE  FL       L P   Y+VTW+ SWSPC    CAGEV  FL  +++V L IF AR+
Sbjct: 66  HAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPD--CAGEVAEFLARHSNVNLTIFTARL 123

Query: 313 YDYD-PLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSG 371
           Y +  P Y+E L+ L   G  V IM Y++F+YCW+ FVY    PF+PW GL+ + + L  
Sbjct: 124 YYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRLLKR 183

Query: 372 RLRAILQ 378
           RLR  LQ
Sbjct: 184 RLRESLQ 190


>gi|10190700 activation-induced cytidine deaminase [Homo sapiens]
          Length = 198

 Score =  139 bits (351), Expect = 3e-33
 Identities = 82/188 (43%), Positives = 108/188 (57%), Gaps = 14/188 (7%)

Query: 192 LMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGFYG 251
           LM+   F + F N      RR+TYLCY V+R D+ T   +D   G+L N  KN      G
Sbjct: 5   LMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLD--FGYLRN--KN------G 54

Query: 252 RHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAAR 311
            H EL FL  +    LDP + YRVTWF SWSPC+   CA  V  FL+ N ++ LRIF AR
Sbjct: 55  CHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYD--CARHVADFLRGNPNLSLRIFTAR 112

Query: 312 IYDYDP--LYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQAL 369
           +Y  +      E L+ L  AG Q++IMT+ ++ YCW+TFV      F+ W+GL E+S  L
Sbjct: 113 LYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRL 172

Query: 370 SGRLRAIL 377
           S +LR IL
Sbjct: 173 SRQLRRIL 180



 Score =  123 bits (308), Expect = 3e-28
 Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 5/186 (2%)

Query: 12  MYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVYFKPQYHAEMCF 71
           M R  F   F+N     GR  T+LCY VK +   ++   D G  R     K   H E+ F
Sbjct: 6   MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRN----KNGCHVELLF 61

Query: 72  LSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISAARLYYYWERDY 131
           L +     L   +C+++TWF SW+PC DC   +A+FL  +PN++L I  ARLY+  +R  
Sbjct: 62  LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKA 121

Query: 132 R-RALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAFLHRTLKEILR 190
               L RL +AG ++ IM ++++ YCW  FV N  + F  W    EN   L R L+ IL 
Sbjct: 122 EPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILL 181

Query: 191 YLMDPD 196
            L + D
Sbjct: 182 PLYEVD 187


>gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3H [Homo sapiens]
          Length = 183

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 14/187 (7%)

Query: 9   MERMYRDTFYDNFENEPILYGRSY---TWLCYEVKIKRGRSNLLWDTGVFRGQVYFKPQY 65
           M  +  +TF   F N+  L    Y     LCY++  + G +         RG    K + 
Sbjct: 1   MALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPT-------RGYFENKKKC 53

Query: 66  HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISAARLYY 125
           HAE+CF++      L   +C+Q+T +++W+PC  C  +L +F+  H ++ L I A+RLYY
Sbjct: 54  HAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYY 113

Query: 126 YWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYK----FDENYAFL 181
           +W +  ++ L  L  +   V +M + EFA CWENFV +E       YK     D+N   +
Sbjct: 114 HWCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKMLEELDKNSRAI 173

Query: 182 HRTLKEI 188
            R L+ I
Sbjct: 174 KRRLERI 180



 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 23/196 (11%)

Query: 192 LMDPDTFTFNFNNDPLVLRR---RQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCG 248
           L+  +TF   FNN   + R    R+  LCY++   +  T        G+  N+ K   C 
Sbjct: 3   LLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGST-----PTRGYFENKKK---C- 53

Query: 249 FYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIF 308
               HAE+ F++ + S+ LD  Q Y+VT +++WSPC S  CA E+  F++ + H+ L IF
Sbjct: 54  ----HAEICFINEIKSMGLDETQCYQVTCYLTWSPCSS--CAWELVDFIKAHDHLNLGIF 107

Query: 309 AARI-YDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFV-YRQGCPFQPWDGLEE-- 364
           A+R+ Y +    ++ L++L  +   V +M + EF  CW+ FV + +   F P+  LEE  
Sbjct: 108 ASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKMLEELD 167

Query: 365 -HSQALSGRLRAILQN 379
            +S+A+  RL  I Q+
Sbjct: 168 KNSRAIKRRLERIKQS 183


>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 2 [Homo sapiens]
          Length = 224

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 10  ERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVYFKPQYHAEM 69
           ER+  + F   F N     GR+ T+LCY V+ +     +    G    +       HAE 
Sbjct: 45  ERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDE---HAAAHAEE 101

Query: 70  CFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISAARLYYYWER 129
            F +       PA + + +TW+VS +PC  C  ++ + LS+  N+ L I   RL+ + E 
Sbjct: 102 AFFNTILPAFDPALR-YNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEP 160

Query: 130 DYRRALCRLSQAGARVTIMDYEEFAYCWENFV---YNEGQQFMPWYKFDENYAFLHRTLK 186
           + + AL +L +AG ++ IM  ++F Y W+NFV     E + F PW    EN+ +    L 
Sbjct: 161 EIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLA 220

Query: 187 EILR 190
           +IL+
Sbjct: 221 DILK 224



 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 18/186 (9%)

Query: 198 FTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGFYGRHAELR 257
           F F F N      R +T+LCY VE    G  V   +  G+L +E           HAE  
Sbjct: 52  FKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASR--GYLEDEHA-------AAHAEEA 102

Query: 258 FLD-LVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYD 316
           F + ++P+   DPA  Y VTW++S SPC +  CA  +   L +  ++RL I   R++ ++
Sbjct: 103 FFNTILPAF--DPALRYNVTWYVSSSPCAA--CADRIIKTLSKTKNLRLLILVGRLFMWE 158

Query: 317 -PLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYR---QGCPFQPWDGLEEHSQALSGR 372
            P  + AL+ L++AG ++ IM   +FEY W  FV +   +   FQPW+ ++E+      +
Sbjct: 159 EPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEK 218

Query: 373 LRAILQ 378
           L  IL+
Sbjct: 219 LADILK 224


>gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]
          Length = 236

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 58/162 (35%), Positives = 82/162 (50%), Gaps = 17/162 (10%)

Query: 2   NPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVYF 61
           +P +R  +E    D FYD  E       R    L YE  IK G S  +W +    G+   
Sbjct: 11  DPTLRRRIEPWEFDVFYDPREL------RKEACLLYE--IKWGMSRKIWRSS---GK--- 56

Query: 62  KPQYHAEMCFLSWFCGNQ--LPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS 119
               H E+ F+  F   +   P+  C  ITWF+SW+PC +C   + EFLS HP VTL I 
Sbjct: 57  NTTNHVEVNFIKKFTSERDFHPSMSC-SITWFLSWSPCWECSQAIREFLSRHPGVTLVIY 115

Query: 120 AARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFV 161
            ARL+++ ++  R+ L  L  +G  + IM   E+ +CW NFV
Sbjct: 116 VARLFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157



 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 253 HAELRFLDLVPSLQ-LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAAR 311
           H E+ F+    S +   P+    +TWF+SWSPC  W C+  +R FL  +  V L I+ AR
Sbjct: 61  HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPC--WECSQAIREFLSRHPGVTLVIYVAR 118

Query: 312 IY-DYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFV 349
           ++   D   ++ L+ L ++G  + IM   E+ +CW  FV
Sbjct: 119 LFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157


>gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 3F isoform b [Homo sapiens]
          Length = 101

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 42/90 (46%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 1  MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 60
          M P  RN +ERMYRDTF  NF N PIL  R+  WLCYEVK K G S    D  +FRGQV 
Sbjct: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVP 59

Query: 61 FKPQYHAEMCFLSWFCGNQLPAYKCFQITW 90
           +    A    LS   G   P +   Q+ W
Sbjct: 60 -RSFIRAPFQVLSSPFGQCAPPHGTAQVQW 88



 Score = 37.0 bits (84), Expect = 0.030
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 196 DTFTFNFNNDPLVLRRRQTYLCYEVE 221
           DTF++NF N P++ RR   +LCYEV+
Sbjct: 15  DTFSYNFYNRPILSRRNTVWLCYEVK 40


>gi|44888831 apolipoprotein B [Homo sapiens]
          Length = 367

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 12/56 (21%)

Query: 95  TPCPD----CVAKLAEFLSEHPNVTLTISAARLYY--------YWERDYRRALCRL 138
           +PC +    C++K+  FL  +P +TL+I  ++LY+         W R+  R+L  L
Sbjct: 125 SPCNEANHCCISKMYNFLITYPGITLSIYFSQLYHTEMDFPASAWNREALRSLASL 180


>gi|156151402 hypothetical protein LOC80183 [Homo sapiens]
          Length = 662

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 351 RQGCPFQPWDGLEEHSQALSGRLRAI 376
           RQ  P +PW+G+ +HS  + G  R +
Sbjct: 8   RQDSPVEPWEGISDHSGIIDGSPRLL 33


>gi|187936961 transmembrane protein 129 isoform a [Homo sapiens]
          Length = 362

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 58  QVYFKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAK 103
           Q Y +P +    C   WF   Q P       TW  S  PCP C A+
Sbjct: 311 QCYCRPMW-CLTCMGKWFASRQDPLRPD---TWLASRVPCPTCRAR 352


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.141    0.485 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,145,548
Number of Sequences: 37866
Number of extensions: 670041
Number of successful extensions: 1581
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1503
Number of HSP's gapped (non-prelim): 25
length of query: 382
length of database: 18,247,518
effective HSP length: 104
effective length of query: 278
effective length of database: 14,309,454
effective search space: 3978028212
effective search space used: 3978028212
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.